Gene: Os04g0479000

General Information

Structural Information

  • Species Oryza sativa ssp. japonica
  • Gene Identifier Os04g0479000
  • Transcript Identifier Os04t0479000-01
  • Gene Type Coding gene
  • Location chr04 : 23955482-23959422 : positive

Gene Family Information

  • ID HOM05D006209
  • #Genes/#Species 128/92
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Os04t0479000-01
  • MSU-ID LOC_Os04g40290.1
  • symbol CRC1
  • uniprot Q7XK25

Descriptions

  • Description Synaptonemal complex component, Initiation of meiotic recombination, Recruitment of PAIR2 onto meiotic chromosomes
  • Description Similar to OSIGBa0116M22.9 protein.
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0051598
IBA
GOA Databasemeiotic recombination checkpoint signaling
GO:0007129
ISO
PLAZA Integrative Orthologyhomologous chromosome pairing at meiosis AT4G24710
GO:0007130
ISO
PLAZA Integrative Orthologysynaptonemal complex assembly AT4G24710
GO:0051026
ISO
PLAZA Integrative Orthologychiasma assembly AT4G24710
GO:0007131
IMP
IBA
GOA Databasereciprocal meiotic recombination
GO:0042138
IMP
GOA Databasemeiotic DNA double-strand break formation
GO:0051321
IEA
GOA Databasemeiotic cell cycle

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016887
IEA
InterProATP hydrolysis activity
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0005515
IPI
GOA Databaseprotein binding
GO:0000166
IEA
GOA Databasenucleotide binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000795
ISO
PLAZA Integrative Orthologysynaptonemal complex AT4G24710
GO:0005634
IDA
IBA
IEA
GOA Databasenucleus
GO:0005694
IDA
IBA
IEA
GOA Databasechromosome

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR044539 Pachytene checkpoint protein 2-like
IPR001270 ClpA/B family
IPR003593 AAA+ ATPase domain
IPR003959 ATPase, AAA-type, core
Mapman id Description
13.3.5.5.1.7 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.class I interference-sensitive crossover pathway.pachytene checkpoint protein (PCH2/CRC1)