Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr03g0060511 Helianthus annuus HOM05D000129 ORTHO05D013395 4.6e-56 221.1 120 100.0
Haze_15693 Corylus avellana HOM05D000129 ORTHO05D000997 1.4e-23 113.2 71 74.6
ECA236G3127 Erigeron canadensis HOM05D000129 ORTHO05D000997 1.8e-23 112.8 71 76.1
Thecc.01G337800 Theobroma cacao HOM05D000129 ORTHO05D000997 8.8e-23 110.5 71 70.4
CSS0000439 Camellia sinensis var. sinensis HOM05D000129 ORTHO05D000997 1.2e-22 110.2 71 74.6
Nn3g18909 Nelumbo nucifera HOM05D000129 ORTHO05D000997 2.0e-22 109.4 71 71.8
CANSAT56G0270 Cannabis sativa HOM05D000129 ORTHO05D000997 3.3e-22 108.6 71 70.4
Cc02_g39700 Coffea canephora HOM05D000129 ORTHO05D000997 3.3e-22 108.6 71 71.8
RcHm_v2.0_Chr1g0360511 Rosa chinensis HOM05D000129 ORTHO05D000997 4.4e-22 108.2 71 71.8
vmacro12591 Vaccinium macrocarpon HOM05D000129 ORTHO05D000997 4.4e-22 108.2 71 73.2
Prupe.2G193300 Prunus persica HOM05D000129 ORTHO05D000997 5.7e-22 107.8 71 70.4
CiPaw.01G079000 Carya illinoinensis HOM05D000129 ORTHO05D000997 7.5e-22 107.5 71 71.8
FAN03G1189 Fragaria x ananassa HOM05D000129 ORTHO05D000997 7.5e-22 107.5 73 67.1
QL08p046124 Quercus lobata HOM05D000129 ORTHO05D000997 7.5e-22 107.5 71 71.8
Ciclev10018638m.g Citrus clementina HOM05D000129 ORTHO05D000997 9.7e-22 107.1 73 68.5
DCAR_022125 Daucus carota HOM05D000129 ORTHO05D000997 1.3e-21 106.7 71 70.4
MD07G1154700 Malus domestica HOM05D000129 ORTHO05D000997 1.3e-21 106.7 71 69.0
FAN10G1048 Fragaria x ananassa HOM05D000129 ORTHO05D000997 1.7e-21 106.3 71 67.6
Gohir.D07G141000 Gossypium hirsutum HOM05D000129 ORTHO05D000997 1.7e-21 106.3 71 69.0
Gorai.001G152900 Gossypium raimondii HOM05D000129 ORTHO05D000997 1.7e-21 106.3 71 69.0
CAN.G1415.9 Capsicum annuum HOM05D000129 ORTHO05D000997 2.2e-21 105.9 71 70.4
Dinv34233 Davidia involucrata HOM05D000129 ORTHO05D000997 2.2e-21 105.9 71 70.4
Sopen01g039940 Solanum pennellii HOM05D000129 ORTHO05D000997 2.2e-21 105.9 71 70.4
Lj7A497G51 Lonicera japonica HOM05D000129 ORTHO05D000997 2.8e-21 105.5 71 70.4
Oeu004990.1 Olea europaea HOM05D000129 ORTHO05D000997 2.8e-21 105.5 71 67.6
Oeu004991.1 Olea europaea HOM05D000129 ORTHO05D000997 2.8e-21 105.5 71 67.6
TAR375G0920 Trochodendron aralioides HOM05D000129 ORTHO05D000997 2.8e-21 105.5 71 69.0
Rhsim01G0176200 Rhododendron simsii HOM05D000129 ORTHO05D000997 3.7e-21 105.1 71 70.4
Hund27171 Selenicereus undatus HOM05D000129 ORTHO05D000997 3.7e-21 105.1 71 67.6
FvH4_7g17100 Fragaria vesca HOM05D000129 ORTHO05D000997 4.8e-21 104.8 71 66.2
FAN06G1016 Fragaria x ananassa HOM05D000129 ORTHO05D000997 4.8e-21 104.8 71 66.2
FAN06G2449 Fragaria x ananassa HOM05D000129 ORTHO05D000997 4.8e-21 104.8 71 66.2
Potri.014G101900 Populus trichocarpa HOM05D000129 ORTHO05D000997 4.8e-21 104.8 71 69.0
Solyc01g096190.3 Solanum lycopersicum HOM05D000129 ORTHO05D000997 4.8e-21 104.8 71 70.4
FAN10G3522 Fragaria x ananassa HOM05D000129 ORTHO05D000997 6.3e-21 104.4 71 66.2
PSO782G1337 Papaver somniferum HOM05D000129 ORTHO05D000997 6.3e-21 104.4 71 66.2
Sabra14G0075000 Salix brachista HOM05D000129 ORTHO05D000997 6.3e-21 104.4 71 70.4
EL10Ac1g00225 Beta vulgaris HOM05D000129 ORTHO05D000997 8.3e-21 104.0 71 69.0
Manes.01G243100 Manihot esculenta HOM05D000129 ORTHO05D000997 8.3e-21 104.0 71 70.4
Peaxi162Scf00767g00017 Petunia axillaris HOM05D000129 ORTHO05D000997 1.1e-20 103.6 71 69.0
Dinv32616 Davidia involucrata HOM05D000129 ORTHO05D000997 1.4e-20 103.2 71 70.4
Eucgr.E00029 Eucalyptus grandis HOM05D000129 ORTHO05D000997 1.8e-20 102.8 71 69.0
TWI59G1368 Tripterygium wilfordii HOM05D000129 ORTHO05D000997 1.8e-20 102.8 71 70.4
COL.COLO4_06249 Corchorus olitorius HOM05D000129 ORTHO05D000997 3.1e-20 102.1 71 63.4
PGSC0003DMG400000123 Solanum tuberosum HOM05D000129 ORTHO05D000997 3.1e-20 102.1 71 69.0
Duzib138G0798 Durio zibethinus HOM05D000129 ORTHO05D000997 5.3e-20 101.3 71 66.2
Nitab4.5_0000307g0060 Nicotiana tabacum HOM05D000129 ORTHO05D000997 5.3e-20 101.3 71 66.2
Atru.chr5.720 Acer truncatum HOM05D000129 ORTHO05D000997 1.2e-19 100.1 71 66.2
Sc01g0002400 Simmondsia chinensis HOM05D000129 ORTHO05D000997 1.2e-19 100.1 71 67.6
Lalb_Chr04g0254311 Lupinus albus HOM05D000129 ORTHO05D000997 1.6e-19 99.8 71 64.8
Actinidia28103 Actinidia chinensis HOM05D000129 ORTHO05D000997 2.7e-19 99.0 71 69.0
AUR62004529 Chenopodium quinoa HOM05D000129 ORTHO05D000997 3.5e-19 98.6 71 66.2
Gohir.A07G136000 Gossypium hirsutum HOM05D000129 ORTHO05D000997 3.5e-19 98.6 71 64.8
Lj3g0002479 Lotus japonicus HOM05D000129 ORTHO05D000997 3.5e-19 98.6 74 63.5
Nitab4.5_0002527g0060 Nicotiana tabacum HOM05D000129 ORTHO05D000997 3.5e-19 98.6 71 66.2
Duzib133G1089 Durio zibethinus HOM05D000129 ORTHO05D000997 4.5e-19 98.2 71 66.2
MBI12_g03909_MAGBIO Magnolia biondii HOM05D000129 ORTHO05D000997 1.3e-18 96.7 71 66.2
TAR374G1426 Trochodendron aralioides HOM05D000129 ORTHO05D000997 1.3e-18 96.7 71 64.8
Ca_23507_v3 Cicer arietinum L. HOM05D000129 ORTHO05D000997 2.2e-18 95.9 71 60.6
AUR62022726 Chenopodium quinoa HOM05D000129 ORTHO05D000997 2.9e-18 95.5 71 64.8
Gohir.D11G103400 Gossypium hirsutum HOM05D000129 ORTHO05D000997 2.9e-18 95.5 71 62.0
Gorai.007G110700 Gossypium raimondii HOM05D000129 ORTHO05D000997 2.9e-18 95.5 71 62.0
Ah.05g179260 Amaranthus hybridus HOM05D000129 ORTHO05D000997 8.5e-18 94.0 72 62.5
PGR044G2449 Punica granatum HOM05D000129 ORTHO05D000997 8.5e-18 94.0 71 62.0
VMungo0331G1607 Vigna mungo HOM05D000129 ORTHO05D000997 8.5e-18 94.0 73 67.1
Gohir.A11G098900 Gossypium hirsutum HOM05D000129 ORTHO05D000997 1.1e-17 93.6 71 60.6
Medtr8g027160 Medicago truncatula HOM05D000129 ORTHO05D000997 1.9e-17 92.8 71 57.7
Aqoxy5G04318 Aquilegia oxysepala HOM05D000129 ORTHO05D000997 2.5e-17 92.4 71 64.8
SalBow3G0358 Salvia bowleyana HOM05D000129 ORTHO05D000997 2.5e-17 92.4 71 63.4
Glyma.07G053100 Glycine max HOM05D000129 ORTHO05D000997 4.2e-17 91.7 73 63.0
arahy.Tifrunner.gnm1.ann1.V96LGR Arachis hypogaea HOM05D000129 ORTHO05D000997 7.2e-17 90.9 71 62.0
Phvul.010G116200 Phaseolus vulgaris HOM05D000129 ORTHO05D000997 7.2e-17 90.9 73 64.4
SGA_v2.0_scaffold98G29437 Striga asiatica HOM05D000129 ORTHO05D000997 7.2e-17 90.9 71 57.7
arahy.Tifrunner.gnm1.ann1.3U9JDY Arachis hypogaea HOM05D000129 ORTHO05D000997 9.4e-17 90.5 71 62.0
Glyma.16G022200 Glycine max HOM05D000129 ORTHO05D000997 9.4e-17 90.5 73 61.6
Psat4g163160 Pisum sativum HOM05D000129 ORTHO05D000997 9.4e-17 90.5 71 57.7
MSTRG.17365 Avicennia marina HOM05D000129 ORTHO05D000997 1.2e-16 90.1 71 60.6
SalBow3G2757 Salvia bowleyana HOM05D000129 ORTHO05D000997 2.1e-16 89.4 71 62.0
Hma1.2p1_0309F.1_g120360 Hydrangea macrophylla HOM05D000129 ORTHO05D000997 4.7e-16 88.2 71 60.6
GSVIVG01027195001 Vitis vinifera HOM05D000129 ORTHO05D000997 8.0e-16 87.4 70 64.3
ATR0810G063 Amborella trichopoda HOM05D000129 ORTHO05D000997 2.3e-15 85.9 71 53.5
Lsat_1_v5_gn_7_2840 Lactuca sativa HOM05D000129 ORTHO05D000997 6.8e-15 84.3 71 67.6
Thhalv10028380m.g Eutrema salsugineum HOM05D000129 ORTHO05D000997 8.8e-15 84.0 71 57.7
Psat7g082400 Pisum sativum HOM05D000129 ORTHO05D000997 1.2e-14 83.6 71 56.3
Migut.B01902 Erythranthe guttata HOM05D000129 ORTHO05D000997 1.5e-14 83.2 73 58.9
CARHR249430 Cardamine hirsuta HOM05D000129 ORTHO05D000997 2.0e-14 82.8 71 56.3
Sp6g01220 Schrenkiella parvula HOM05D000129 ORTHO05D000997 3.4e-14 82.0 71 57.7
Aa31LG5G1030 Aethionema arabicum HOM05D000129 ORTHO05D000997 1.3e-13 80.1 72 58.3
A09p00930 Brassica napus HOM05D000129 ORTHO05D000997 1.3e-13 80.1 71 57.7
BraA09t35764Z Brassica rapa HOM05D000129 ORTHO05D000997 1.7e-13 79.7 71 57.7
THA.LOC104825889 Tarenaya hassleriana HOM05D000129 ORTHO05D000997 1.7e-13 79.7 71 56.3
AL6G52490 Arabidopsis lyrata HOM05D000129 ORTHO05D000997 2.2e-13 79.3 71 52.1
AT4G00900 Arabidopsis thaliana HOM05D000129 ORTHO05D000997 2.2e-13 79.3 71 52.1
BcaC04g24113 Brassica carinata HOM05D000129 ORTHO05D000997 3.7e-13 78.6 71 57.7
C09p01020 Brassica napus HOM05D000129 ORTHO05D000997 3.7e-13 78.6 71 57.7
BolC9t53035H Brassica oleracea HOM05D000129 ORTHO05D000997 3.7e-13 78.6 71 57.7
HPP92_001827 Vanilla planifolia HOM05D000129 ORTHO05D000997 4.8e-13 78.2 71 56.3
BcaB01g02299 Brassica carinata HOM05D000129 ORTHO05D000997 1.1e-12 77.0 57 63.2
Mapoly0013s0119 Marchantia polymorpha HOM05D000129 ORTHO05D000997 2.4e-12 75.9 71 52.1
Carub.0006s3594 Capsella rubella HOM05D000129 ORTHO05D000997 4.1e-12 75.1 71 52.1
HanXRQChr02g0032931 Helianthus annuus HOM05D006633 ORTHO05D008259 3.5e-11 72.0 41 82.9
Pp3c11_18120 Physcomitrium patens HOM05D000129 ORTHO05D000997 8.6e-10 67.4 71 47.9
FAN01G0127 Fragaria x ananassa HOM05D000129 ORTHO05D000997 1.9e-09 66.2 49 61.2
AagrBONN_evm.TU.Sc2ySwM_228.4173 Anthoceros agrestis HOM05D000129 ORTHO05D000997 2.5e-09 65.9 71 47.9
SEGI_34330 Sequoiadendron giganteum HOM05D000129 ORTHO05D000997 3.3e-09 65.5 71 47.9
SEGI_06064 Sequoiadendron giganteum HOM05D000129 ORTHO05D000997 7.2e-09 64.3 71 47.9
CBR_g40710 Chara braunii HOM05D000129 ORTHO05D000997 9.5e-09 63.9 71 49.3
Mapoly0082s0070 Marchantia polymorpha HOM05D000129 ORTHO05D003444 9.5e-09 63.9 67 46.3
SEGI_12721 Sequoiadendron giganteum HOM05D000129 ORTHO05D000997 3.6e-08 62.0 71 45.1
SEGI_19937 Sequoiadendron giganteum HOM05D000129 ORTHO05D000997 6.1e-08 61.2 71 45.1
SEGI_24930 Sequoiadendron giganteum HOM05D000129 ORTHO05D000997 6.1e-08 61.2 71 45.1
CAN.G1209.5 Capsicum annuum HOM05D000129 ORTHO05D000997 8.0e-08 60.8 42 64.3
SEGI_06398 Sequoiadendron giganteum HOM05D000129 ORTHO05D000997 8.0e-08 60.8 71 43.7
CAN.G1084.14 Capsicum annuum HOM05D000129 ORTHO05D000997 1.0e-07 60.5 42 64.3
CAN.G960.85 Capsicum annuum HOM05D000129 ORTHO05D000997 1.8e-07 59.7 42 61.9
CAN.G959.10 Capsicum annuum HOM05D000129 ORTHO05D000997 2.3e-07 59.3 42 64.3
CAN.G960.80 Capsicum annuum HOM05D000129 ORTHO05D000997 5.2e-07 58.2 42 64.3
TPR.G15916 Trifolium pratense HOM05D000129 ORTHO05D000997 8.9e-07 57.4 54 50.0
CAN.G843.23 Capsicum annuum HOM05D000422 ORTHO05D001248 1.5e-06 56.6 32 87.5
Pp3c9_16670 Physcomitrium patens HOM05D000129 ORTHO05D000997 2.0e-06 56.2 71 50.7
HanXRQChr13g0421751 Helianthus annuus HOM05D000422 ORTHO05D023932 2.6e-06 55.8 31 83.9
SMO118G0553 Selaginella moellendorffii HOM05D000129 ORTHO05D000997 2.6e-06 55.8 52 51.9
SEGI_02066 Sequoiadendron giganteum HOM05D000129 ORTHO05D015777 2.6e-06 55.8 71 39.4
Aqoxy3G01886 Aquilegia oxysepala HOM05D000422 ORTHO05D001248 4.4e-06 55.1 31 87.1
Ciclev10030863m.g Citrus clementina HOM05D000422 ORTHO05D001248 4.4e-06 55.1 31 87.1
Cc04_g05910 Coffea canephora HOM05D000422 ORTHO05D001248 4.4e-06 55.1 31 87.1
DCAR_016352 Daucus carota HOM05D000422 ORTHO05D001248 4.4e-06 55.1 31 87.1
DCAR_025657 Daucus carota HOM05D000422 ORTHO05D001248 4.4e-06 55.1 31 87.1
ECA247G2359 Erigeron canadensis HOM05D000422 ORTHO05D001248 4.4e-06 55.1 31 87.1
ECA247G2390 Erigeron canadensis HOM05D000422 ORTHO05D001248 4.4e-06 55.1 31 87.1
Migut.D01192 Erythranthe guttata HOM05D000422 ORTHO05D001248 4.4e-06 55.1 31 87.1
Migut.I00611 Erythranthe guttata HOM05D000422 ORTHO05D001248 4.4e-06 55.1 31 87.1
HanXRQChr05g0154561 Helianthus annuus HOM05D000422 ORTHO05D001248 4.4e-06 55.1 31 87.1
Lsat_1_v5_gn_1_27961 Lactuca sativa HOM05D000422 ORTHO05D001248 4.4e-06 55.1 31 87.1
Lsat_1_v5_gn_5_15861 Lactuca sativa HOM05D000422 ORTHO05D001248 4.4e-06 55.1 31 87.1
Lj9C485G16 Lonicera japonica HOM05D000422 ORTHO05D001248 4.4e-06 55.1 31 87.1
Nitab4.5_0000663g0180 Nicotiana tabacum HOM05D000422 ORTHO05D001248 4.4e-06 55.1 31 87.1
Nitab4.5_0002450g0030 Nicotiana tabacum HOM05D000422 ORTHO05D001248 4.4e-06 55.1 31 87.1
PSO017G4374 Papaver somniferum HOM05D000422 ORTHO05D001248 4.4e-06 55.1 31 87.1
PSO478G3114 Papaver somniferum HOM05D000422 ORTHO05D001248 4.4e-06 55.1 31 87.1
Peaxi162Scf00314g00528 Petunia axillaris HOM05D000422 ORTHO05D001248 4.4e-06 55.1 31 87.1
Peaxi162Scf01168g00111 Petunia axillaris HOM05D000422 ORTHO05D001248 4.4e-06 55.1 31 87.1
TAR622G0976 Trochodendron aralioides HOM05D000422 ORTHO05D001248 4.4e-06 55.1 31 87.1
vmacro19167 Vaccinium macrocarpon HOM05D000422 ORTHO05D001248 4.4e-06 55.1 31 87.1
Pp3c15_16420 Physcomitrium patens HOM05D000129 ORTHO05D000997 5.7e-06 54.7 71 46.5
SEGI_26984 Sequoiadendron giganteum HOM05D000129 ORTHO05D000997 5.7e-06 54.7 48 47.9
Ah.11g046770 Amaranthus hybridus HOM05D000422 ORTHO05D001248 7.5e-06 54.3 31 83.9
AUR62009519 Chenopodium quinoa HOM05D000422 ORTHO05D001248 7.5e-06 54.3 31 83.9
AUR62009520 Chenopodium quinoa HOM05D000422 ORTHO05D001248 7.5e-06 54.3 31 83.9
Aa31LG3G7410 Aethionema arabicum HOM05D000422 ORTHO05D001248 9.8e-06 53.9 31 83.9
AagrBONN_evm.TU.Sc2ySwM_344.2914 Anthoceros agrestis HOM05D000422 ORTHO05D001248 9.8e-06 53.9 31 83.9
Aqoxy7G02622 Aquilegia oxysepala HOM05D000422 ORTHO05D013395 9.8e-06 53.9 33 78.8
AL8G25110 Arabidopsis lyrata HOM05D000422 ORTHO05D001248 9.8e-06 53.9 31 83.9
AT5G50920 Arabidopsis thaliana HOM05D000422 ORTHO05D001248 9.8e-06 53.9 31 83.9
BcaNung07187 Brassica carinata HOM05D000422 ORTHO05D001248 9.8e-06 53.9 31 83.9
A03p16460 Brassica napus HOM05D000422 ORTHO05D001248 9.8e-06 53.9 31 83.9
C03p19350 Brassica napus HOM05D000422 ORTHO05D001248 9.8e-06 53.9 31 83.9
BolC3t14321H Brassica oleracea HOM05D000422 ORTHO05D001248 9.8e-06 53.9 31 83.9
BraA03t10935Z Brassica rapa HOM05D000422 ORTHO05D001248 9.8e-06 53.9 31 83.9
Carub.0008s1093 Capsella rubella HOM05D000422 ORTHO05D001248 9.8e-06 53.9 31 83.9
CARHR257340 Cardamine hirsuta HOM05D000422 ORTHO05D001248 9.8e-06 53.9 31 83.9
CDE02G2810 Ceratophyllum demersum HOM05D000422 ORTHO05D001248 9.8e-06 53.9 31 83.9
CDE06G0243 Ceratophyllum demersum HOM05D000422 ORTHO05D001248 9.8e-06 53.9 31 83.9
CDE09G0897 Ceratophyllum demersum HOM05D000422 ORTHO05D001248 9.8e-06 53.9 31 83.9
Thhalv10012603m.g Eutrema salsugineum HOM05D000422 ORTHO05D001248 9.8e-06 53.9 31 83.9
HanXRQChr08g0235061 Helianthus annuus HOM05D000422 ORTHO05D001248 9.8e-06 53.9 31 83.9
HanXRQChr09g0273921 Helianthus annuus HOM05D000422 ORTHO05D001248 9.8e-06 53.9 31 83.9
HanXRQChr16g0498881 Helianthus annuus HOM05D000422 ORTHO05D001248 9.8e-06 53.9 31 83.9
Lsat_1_v5_gn_4_84680 Lactuca sativa HOM05D000422 ORTHO05D001248 9.8e-06 53.9 31 83.9
Nitab4.5_0003119g0020 Nicotiana tabacum HOM05D000422 ORTHO05D001248 9.8e-06 53.9 31 83.9
Nitab4.5_0009686g0040 Nicotiana tabacum HOM05D000422 ORTHO05D001248 9.8e-06 53.9 31 83.9
PSO017G2230 Papaver somniferum HOM05D000422 ORTHO05D001248 9.8e-06 53.9 31 83.9
PSO478G5088 Papaver somniferum HOM05D000422 ORTHO05D001248 9.8e-06 53.9 31 83.9
SalBow1G7968 Salvia bowleyana HOM05D000422 ORTHO05D001248 9.8e-06 53.9 31 83.9
Sp6g13090 Schrenkiella parvula HOM05D000422 ORTHO05D001248 9.8e-06 53.9 31 83.9
Solyc03g118340.3 Solanum lycopersicum HOM05D000422 ORTHO05D001248 9.8e-06 53.9 31 83.9
Solyc12g042060.3 Solanum lycopersicum HOM05D000422 ORTHO05D001248 9.8e-06 53.9 31 83.9
Sopen03g037240 Solanum pennellii HOM05D000422 ORTHO05D001248 9.8e-06 53.9 31 83.9
Sopen12g021150 Solanum pennellii HOM05D000422 ORTHO05D001248 9.8e-06 53.9 31 83.9
PGSC0003DMG400014248 Solanum tuberosum HOM05D000422 ORTHO05D001248 9.8e-06 53.9 31 83.9
PGSC0003DMG400021039 Solanum tuberosum HOM05D000422 ORTHO05D001248 9.8e-06 53.9 31 83.9
PGSC0003DMG402014476 Solanum tuberosum HOM05D000422 ORTHO05D001248 9.8e-06 53.9 31 83.9
THA.LOC104821539 Tarenaya hassleriana HOM05D000422 ORTHO05D001248 9.8e-06 53.9 31 83.9
TAR371G0742 Trochodendron aralioides HOM05D000422 ORTHO05D001248 9.8e-06 53.9 31 83.9


User provided reference genes

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