Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr00c0988g0578131 Helianthus annuus HOM05D000216 ORTHO05D000634 2.5e-83 312.0 153 100.0
HanXRQChr00c0601g0576531 Helianthus annuus HOM05D000216 ORTHO05D000634 1.0e-60 236.9 130 90.8
HanXRQChr08g0210181 Helianthus annuus HOM05D000216 ORTHO05D000634 1.0e-60 236.9 130 90.8
HanXRQChr11g0326611 Helianthus annuus HOM05D000216 ORTHO05D000634 1.0e-60 236.9 130 90.8
HanXRQCPg0579801 Helianthus annuus HOM05D000216 ORTHO05D001131 1.0e-60 236.9 130 90.8
Lsat_1_v5_gn_5_26601 Lactuca sativa HOM05D000216 ORTHO05D000634 2.2e-58 229.2 130 88.5
DCAR_032474 Daucus carota HOM05D000216 ORTHO05D000634 3.5e-56 221.9 130 83.1
Hma1.2p1_0414F.1_g147670 Hydrangea macrophylla HOM05D000216 ORTHO05D000634 4.5e-56 221.5 124 87.1
CAN.G1180.14 Capsicum annuum HOM05D000216 ORTHO05D000634 7.7e-56 220.7 130 83.1
CAN.G1648.10 Capsicum annuum HOM05D000216 ORTHO05D000634 7.7e-56 220.7 130 83.1
CAN.G939.13 Capsicum annuum HOM05D000216 ORTHO05D000634 2.2e-55 219.2 130 82.3
LjContig00489g0015528 Lotus japonicus HOM05D000216 ORTHO05D000634 3.8e-55 218.4 130 84.6
Solyc00g500290.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 3.8e-55 218.4 130 82.3
Eucgr.K02695 Eucalyptus grandis HOM05D000216 ORTHO05D000634 5.0e-55 218.0 130 83.1
unitig_91.g26496 Utricularia gibba HOM05D000216 ORTHO05D000634 6.5e-55 217.6 130 81.5
PGR111G0086 Punica granatum HOM05D000216 ORTHO05D000634 1.5e-54 216.5 130 82.3
PGSC0003DMG400017664 Solanum tuberosum HOM05D000216 ORTHO05D000634 1.9e-54 216.1 130 81.5
Atru.chr2.3403 Acer truncatum HOM05D000216 ORTHO05D000634 2.5e-54 215.7 130 81.5
ATCG00170 Arabidopsis thaliana HOM05D000216 ORTHO05D000634 3.2e-54 215.3 130 82.3
BolSC45t60937H Brassica oleracea HOM05D000216 ORTHO05D000634 5.5e-54 214.5 152 73.7
RcHm_v2.0_CPg0502411 Rosa chinensis HOM05D000216 ORTHO05D000634 1.2e-53 213.4 130 80.8
Lsat_1_v5_gn_1_6760 Lactuca sativa HOM05D003214 ORTHO05D004330 2.7e-53 212.2 117 90.6
BNapus_Darmor_BZH_scaffold_253p00060 Brassica napus HOM05D000216 ORTHO05D000634 4.7e-53 211.5 130 80.8
BraSC140t45598Z Brassica rapa HOM05D000216 ORTHO05D000634 4.7e-53 211.5 130 80.8
BraSC58t46405Z Brassica rapa HOM05D000216 ORTHO05D000634 4.7e-53 211.5 130 80.8
EL10As12g24016 Beta vulgaris HOM05D000216 ORTHO05D001131 6.1e-53 211.1 124 83.1
CAN.G612.1 Capsicum annuum HOM05D000216 ORTHO05D000634 8.0e-53 210.7 130 80.8
CiPaw.12G031000 Carya illinoinensis HOM05D000216 ORTHO05D000634 1.4e-52 209.9 130 80.0
ATR0187G001 Amborella trichopoda HOM05D000216 ORTHO05D000634 1.8e-52 209.5 123 83.7
Potri.013G140260 Populus trichocarpa HOM05D000216 ORTHO05D000634 3.0e-52 208.8 124 79.8
Medtr4g051120 Medicago truncatula HOM05D000216 ORTHO05D000634 2.6e-51 205.7 134 73.9
Hund03956 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.6e-51 205.7 131 78.6
Hund25862 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.6e-51 205.7 131 78.6
Hund27560 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.6e-51 205.7 131 78.6
Hund27610 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.6e-51 205.7 131 78.6
Hund27866 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.6e-51 205.7 131 78.6
Hund27996 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.6e-51 205.7 131 78.6
Hund28277 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.6e-51 205.7 131 78.6
Hund28387 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.6e-51 205.7 131 78.6
Hund28559 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.6e-51 205.7 131 78.6
Hund28793 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.6e-51 205.7 131 78.6
Hund29352 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.6e-51 205.7 131 78.6
Hund29740 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.6e-51 205.7 131 78.6
PSO548G0073 Papaver somniferum HOM05D000216 ORTHO05D000634 7.5e-51 204.1 124 80.6
Lalb_Chr09g0335361 Lupinus albus HOM05D000216 ORTHO05D000634 9.8e-51 203.8 132 78.0
Peaxi162Scf00379g00084 Petunia axillaris HOM05D000216 ORTHO05D000634 2.8e-50 202.2 114 87.7
Solyc00g500052.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 2.8e-50 202.2 117 84.6
Solyc00g500135.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 2.8e-50 202.2 117 84.6
Solyc00g500205.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 2.8e-50 202.2 117 84.6
Solyc00g500319.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 2.8e-50 202.2 117 84.6
Manes.01G046800 Manihot esculenta HOM05D000216 ORTHO05D000634 6.3e-50 201.1 122 79.5
Psat2g044360 Pisum sativum HOM05D000216 ORTHO05D000634 9.1e-49 197.2 136 70.6
LjContig00318g0011041 Lotus japonicus HOM05D000216 ORTHO05D000634 2.9e-47 192.2 132 73.5
vmacro22403 Vaccinium macrocarpon HOM05D000216 ORTHO05D000634 1.9e-46 189.5 100 89.0
CAN.G511.9 Capsicum annuum HOM05D000216 ORTHO05D000634 2.5e-46 189.1 112 83.0
CDE07G0287 Ceratophyllum demersum HOM05D003429 ORTHO05D003873 2.5e-46 189.1 113 82.3
Hund15943 Selenicereus undatus HOM05D000216 ORTHO05D000634 6.1e-45 184.5 131 72.5
Ah.10g028500 Amaranthus hybridus HOM05D000216 ORTHO05D000634 1.0e-44 183.7 116 78.4
SGA_v2.0_scaffold119G32689 Striga asiatica HOM05D000216 ORTHO05D000634 1.0e-44 183.7 116 77.6
Gohir.D03G089666 Gossypium hirsutum HOM05D000216 ORTHO05D000634 1.8e-44 183.0 115 80.0
Lsat_1_v5_gn_3_118000 Lactuca sativa HOM05D000216 ORTHO05D000634 1.8e-44 183.0 98 91.8
Lj2C1239T72 Lonicera japonica HOM05D000216 ORTHO05D000634 1.8e-44 183.0 97 89.7
arahy.Tifrunner.gnm1.ann1.N383GM Arachis hypogaea HOM05D000216 ORTHO05D000634 4.0e-44 181.8 134 67.9
SabraPtG0001000 Salix brachista HOM05D000216 ORTHO05D000634 4.0e-44 181.8 97 87.6
SalBow1G4778 Salvia bowleyana HOM05D000216 ORTHO05D001131 6.8e-44 181.0 101 85.1
Gorai.003G071700 Gossypium raimondii HOM05D000216 ORTHO05D000634 8.8e-44 180.6 115 78.3
Ah.10g027600 Amaranthus hybridus HOM05D000216 ORTHO05D000634 1.5e-43 179.9 116 76.7
Ah.10g027800 Amaranthus hybridus HOM05D000216 ORTHO05D000634 1.5e-43 179.9 116 76.7
CsaV3_UNG207810 Cucumis sativus L. HOM05D000216 ORTHO05D000634 1.5e-43 179.9 97 90.7
Lj1g0027665 Lotus japonicus HOM05D000216 ORTHO05D000634 3.4e-43 178.7 132 68.9
Psat4g062520 Pisum sativum HOM05D000216 ORTHO05D003518 3.4e-43 178.7 101 80.2
SGA_v2.0_scaffold477G52216 Striga asiatica HOM05D000216 ORTHO05D000634 4.4e-43 178.3 116 75.9
Psat5g134640 Pisum sativum HOM05D000216 ORTHO05D000634 1.3e-42 176.8 101 80.2
AUR62042525 Chenopodium quinoa HOM05D000216 ORTHO05D000580 3.7e-42 175.3 97 87.6
Atru.chr6.1615 Acer truncatum HOM05D000216 ORTHO05D000634 4.9e-42 174.9 106 80.2
Glyma.02G221400 Glycine max HOM05D000216 ORTHO05D000634 4.9e-42 174.9 132 67.4
AUR62030122 Chenopodium quinoa HOM05D000216 ORTHO05D000634 8.3e-42 174.1 97 86.6
Hund27917 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.1e-41 173.7 97 86.6
Medtr0002s0510 Medicago truncatula HOM05D000216 ORTHO05D001131 1.4e-41 173.3 125 69.6
Hund04025 Selenicereus undatus HOM05D000216 ORTHO05D000634 9.2e-41 170.6 117 74.4
Sc07g0006590 Simmondsia chinensis HOM05D000216 ORTHO05D000634 9.2e-41 170.6 95 86.3
Zm00001eb314280 Zea mays HOM05D000216 ORTHO05D000634 9.2e-41 170.6 127 66.9
Zm00001eb435270 Zea mays HOM05D000216 ORTHO05D000634 9.2e-41 170.6 127 66.9
Zm00001eb435480 Zea mays HOM05D000216 ORTHO05D000634 9.2e-41 170.6 127 66.9
Zm00001eb436830 Zea mays HOM05D000216 ORTHO05D000634 9.2e-41 170.6 127 66.9
Zm00001eb437260 Zea mays HOM05D000216 ORTHO05D000634 9.2e-41 170.6 127 66.9
RhsimPtG0004600 Rhododendron simsii HOM05D000743 ORTHO05D000580 2.7e-40 169.1 95 81.1
SGA_v2.0_scaffold132G34498 Striga asiatica HOM05D000216 ORTHO05D000634 5.9e-40 167.9 105 79.0
Medtr7g116700 Medicago truncatula HOM05D000216 ORTHO05D000634 7.7e-40 167.5 132 63.6
Medtr7g069560 Medicago truncatula HOM05D000216 ORTHO05D000634 3.8e-39 165.2 130 63.8
Sed0000813 Sechium edule HOM05D000216 ORTHO05D000634 1.9e-38 162.9 131 67.9
EL10Ac3g05558 Beta vulgaris HOM05D000216 ORTHO05D000634 4.3e-38 161.8 93 83.9
Sed0017787 Sechium edule HOM05D000216 ORTHO05D000634 4.0e-36 155.2 105 76.2
HanXRQChr14g0454991 Helianthus annuus HOM05D000216 ORTHO05D000634 6.8e-36 154.5 99 77.8
Sed0025233 Sechium edule HOM05D000216 ORTHO05D001131 6.8e-36 154.5 85 88.2
Gorai.013G018800 Gossypium raimondii HOM05D000216 ORTHO05D000634 1.5e-35 153.3 99 79.8
Gohir.D13G016950 Gossypium hirsutum HOM05D000216 ORTHO05D000634 2.9e-34 149.1 99 77.8
Medtr5g098620 Medicago truncatula HOM05D000216 ORTHO05D000634 3.5e-32 142.1 135 54.8
Lj2C1239G21 Lonicera japonica HOM05D000216 ORTHO05D000634 4.6e-32 141.7 88 78.4
Migut.K00966 Erythranthe guttata HOM05D000216 ORTHO05D000634 1.7e-31 139.8 104 69.2
Lalb_Chr06g0173101 Lupinus albus HOM05D000216 ORTHO05D000634 5.0e-31 138.3 100 71.0
Hund12594 Selenicereus undatus HOM05D000216 ORTHO05D000634 5.0e-31 138.3 104 65.4
Solyc08g028910.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 5.0e-31 138.3 93 76.3
Lalb_Chr13g0292901 Lupinus albus HOM05D000216 ORTHO05D000634 6.6e-31 137.9 78 83.3
TPR.G26480 Trifolium pratense HOM05D000216 ORTHO05D000634 8.6e-31 137.5 87 73.6
Gorai.008G102500 Gossypium raimondii HOM05D000216 ORTHO05D000634 1.1e-30 137.1 94 72.3
Nitab4.5_0001761g0220 Nicotiana tabacum HOM05D000216 ORTHO05D000634 1.5e-30 136.7 98 70.4
Gohir.D01G206650 Gossypium hirsutum HOM05D000216 ORTHO05D000634 7.3e-30 134.4 89 75.3
Gohir.D12G094332 Gossypium hirsutum HOM05D000216 ORTHO05D000634 1.4e-28 130.2 99 67.7
HanXRQChr07g0188321 Helianthus annuus HOM05D000216 ORTHO05D000634 1.3e-26 123.6 60 100.0
Gorai.004G210400 Gossypium raimondii HOM05D000216 ORTHO05D000634 1.4e-25 120.2 76 75.0
Gohir.D08G199601 Gossypium hirsutum HOM05D000216 ORTHO05D000634 1.9e-25 119.8 78 71.8
Migut.D01340 Erythranthe guttata HOM05D000216 ORTHO05D000634 3.2e-25 119.0 102 64.7
Lsat_1_v5_gn_4_51820 Lactuca sativa HOM05D000216 ORTHO05D009870 4.6e-24 115.2 61 91.8
arahy.Tifrunner.gnm1.ann1.8W122S Arachis hypogaea HOM05D000216 ORTHO05D000634 1.7e-23 113.2 103 56.3
HanXRQChr00c0300g0573181 Helianthus annuus HOM05D000216 ORTHO05D000634 3.0e-23 112.5 54 100.0
HanXRQChr00c0823g0577631 Helianthus annuus HOM05D000216 ORTHO05D000634 6.6e-23 111.3 54 98.1
CAN.G213.14 Capsicum annuum HOM05D000216 ORTHO05D000634 8.6e-23 110.9 57 91.2
Gorai.002G075300 Gossypium raimondii HOM05D000216 ORTHO05D000634 1.5e-22 110.2 70 75.7
Nitab4.5_0004184g0070 Nicotiana tabacum HOM05D000216 ORTHO05D000634 6.2e-21 104.8 60 86.7
AUR62041877 Chenopodium quinoa HOM05D000216 ORTHO05D000634 1.8e-20 103.2 87 65.5
AUR62021208 Chenopodium quinoa HOM05D000216 ORTHO05D000634 1.5e-19 100.1 61 78.7
AUR62030170 Chenopodium quinoa HOM05D000216 ORTHO05D000634 5.8e-19 98.2 59 81.4
arahy.Tifrunner.gnm1.ann1.EI2YTD Arachis hypogaea HOM05D000890 ORTHO05D000697 3.7e-18 95.5 55 81.8
Lalb_Chr23g0274571 Lupinus albus HOM05D000216 ORTHO05D000634 1.1e-17 94.0 63 76.2
CARHR056720 Cardamine hirsuta HOM05D000216 ORTHO05D000634 5.4e-17 91.7 48 91.7
Gohir.A07G183950 Gossypium hirsutum HOM05D000216 ORTHO05D000634 5.4e-17 91.7 62 71.0
Gorai.013G017900 Gossypium raimondii HOM05D000216 ORTHO05D000634 9.5e-14 80.9 43 88.4
Gorai.011G135800 Gossypium raimondii HOM05D000216 ORTHO05D000634 1.8e-12 76.6 42 83.3
HanXRQChr00c0313g0573461 Helianthus annuus HOM05D000216 ORTHO05D000634 3.1e-12 75.9 34 100.0
Solyc05g020010.1 Solanum lycopersicum HOM05D000388 ORTHO05D000473 1.2e-11 73.9 58 65.5
Oeu012802.1 Olea europaea HOM05D000216 ORTHO05D000634 2.2e-10 69.7 45 73.3
Mapoly0087s0067 Marchantia polymorpha HOM05D000216 ORTHO05D000634 3.8e-10 68.9 72 47.2
SMO086G0013 Selaginella moellendorffii HOM05D000216 ORTHO05D000634 4.9e-10 68.6 96 41.7
Solyc07g021290.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 8.4e-10 67.8 34 85.3
Gohir.D10G123250 Gossypium hirsutum HOM05D000216 ORTHO05D000634 1.1e-09 67.4 36 83.3
Gohir.A05G086066 Gossypium hirsutum HOM05D000216 ORTHO05D000634 2.4e-09 66.2 33 87.9
QL93p0837_0001 Quercus lobata HOM05D000216 ORTHO05D000634 7.1e-09 64.7 34 82.4
Sc11g0005800 Simmondsia chinensis HOM05D000216 ORTHO05D000634 2.7e-08 62.8 34 76.5
Oeu010681.1 Olea europaea HOM05D000216 ORTHO05D000634 2.3e-07 59.7 47 63.8
GSVIVG01030958001 Vitis vinifera HOM05D000216 ORTHO05D000634 3.9e-07 58.9 49 61.2
Solyc12g062650.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.9e-06 56.6 27 85.2
SGA_v2.0_scaffold69G23193 Striga asiatica HOM05D000216 ORTHO05D000634 7.3e-06 54.7 42 59.5


User provided reference genes

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