Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_028085 Vanilla planifolia HOM05D005140 ORTHO05D006288 3.1e-271 937.9 496 100.0
HPP92_020526 Vanilla planifolia HOM05D005140 ORTHO05D006288 3.5e-251 871.3 504 93.3
HPP92_022002 Vanilla planifolia HOM05D005140 ORTHO05D006288 2.3e-186 656.0 423 75.4
TAR636G3078 Trochodendron aralioides HOM05D005140 ORTHO05D006288 3.6e-179 632.1 424 74.5
MELO3C003340.2 Cucumis melo HOM05D005140 ORTHO05D006288 1.8e-178 629.8 443 71.3
CsaV3_3G049760 Cucumis sativus L. HOM05D005140 ORTHO05D006288 1.8e-178 629.8 445 71.0
ClCG09G012630 Citrullus lanatus HOM05D005140 ORTHO05D006288 3.4e-177 625.5 443 70.2
Gorai.004G191200 Gossypium raimondii HOM05D005140 ORTHO05D006288 3.7e-176 622.1 443 70.9
Rhsim07G0119600 Rhododendron simsii HOM05D005140 ORTHO05D006288 1.8e-175 619.8 429 72.0
vmacro23518 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 1.8e-175 619.8 437 70.3
Nn6g33739 Nelumbo nucifera HOM05D005140 ORTHO05D006288 9.2e-175 617.5 422 73.0
Thecc.03G238100 Theobroma cacao HOM05D005140 ORTHO05D006288 9.2e-175 617.5 422 72.5
Gohir.D08G182300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 2.0e-174 616.3 443 70.4
Prupe.5G053400 Prunus persica HOM05D005140 ORTHO05D006288 2.7e-174 615.9 428 72.4
Sed0013740 Sechium edule HOM05D005140 ORTHO05D006288 4.6e-174 615.1 420 72.1
CiPaw.12G056200 Carya illinoinensis HOM05D005140 ORTHO05D006288 1.7e-173 613.2 426 71.1
MSTRG.13768 Avicennia marina HOM05D005140 ORTHO05D006288 3.9e-173 612.1 424 72.6
RcHm_v2.0_Chr7g0206411 Rosa chinensis HOM05D005140 ORTHO05D006288 6.6e-173 611.3 429 71.6
Lalb_Chr09g0324091 Lupinus albus HOM05D005140 ORTHO05D006288 8.6e-173 610.9 423 71.9
Atru.chr9.1157 Acer truncatum HOM05D005140 ORTHO05D006288 1.1e-172 610.5 420 71.0
Sed0020438 Sechium edule HOM05D005140 ORTHO05D006288 1.9e-172 609.8 422 71.6
Eucgr.D02138 Eucalyptus grandis HOM05D005140 ORTHO05D006288 3.3e-172 609.0 436 70.4
Hund14471 Selenicereus undatus HOM05D005140 ORTHO05D006288 4.3e-172 608.6 425 71.5
Cc08_g11170 Coffea canephora HOM05D005140 ORTHO05D006288 1.6e-171 606.7 424 71.0
Haze_08349 Corylus avellana HOM05D005140 ORTHO05D006288 1.6e-171 606.7 429 69.7
QL12p008469 Quercus lobata HOM05D005140 ORTHO05D006288 1.6e-171 606.7 419 71.4
Manes.01G182900 Manihot esculenta HOM05D005140 ORTHO05D006288 2.8e-171 605.9 415 72.3
Migut.F01520 Erythranthe guttata HOM05D005140 ORTHO05D006288 3.6e-171 605.5 416 71.9
TWI60G0080 Tripterygium wilfordii HOM05D005140 ORTHO05D006288 6.2e-171 604.7 420 70.7
FAN08G1378 Fragaria x ananassa HOM05D005140 ORTHO05D006288 8.0e-171 604.4 426 71.4
PGR031G2829 Punica granatum HOM05D005140 ORTHO05D006288 1.0e-170 604.0 425 70.6
FvH4_5g20680 Fragaria vesca HOM05D005140 ORTHO05D006288 5.2e-170 601.7 430 70.2
Solyc08g077750.4 Solanum lycopersicum HOM05D005140 ORTHO05D006288 5.2e-170 601.7 419 71.4
Aqoxy3G02576 Aquilegia oxysepala HOM05D005140 ORTHO05D006288 6.8e-170 601.3 423 71.4
CANSAT21G2106 Cannabis sativa HOM05D005140 ORTHO05D006288 6.8e-170 601.3 440 69.1
Dinv25152 Davidia involucrata HOM05D005140 ORTHO05D006288 1.2e-169 600.5 442 69.2
Lsat_1_v5_gn_6_94760 Lactuca sativa HOM05D005140 ORTHO05D006288 2.0e-169 599.7 431 69.4
Glyma.01G204000 Glycine max HOM05D005140 ORTHO05D006288 2.6e-169 599.4 435 69.2
Glyma.11G039000 Glycine max HOM05D005140 ORTHO05D006288 3.4e-169 599.0 436 68.6
FAN04G2093 Fragaria x ananassa HOM05D005140 ORTHO05D006288 5.8e-169 598.2 430 70.0
FAN13G1317 Fragaria x ananassa HOM05D005140 ORTHO05D006288 9.8e-169 597.4 428 69.9
SGA_v2.0_scaffold20G09272 Striga asiatica HOM05D005140 ORTHO05D006288 3.7e-168 595.5 438 69.9
CAN.G572.25 Capsicum annuum HOM05D005140 ORTHO05D006288 4.9e-168 595.1 418 70.6
Ca_24617_v3 Cicer arietinum L. HOM05D005140 ORTHO05D006288 4.9e-168 595.1 449 67.3
Sopen08g026270 Solanum pennellii HOM05D005140 ORTHO05D006288 4.9e-168 595.1 419 70.9
COL.COLO4_06693 Corchorus olitorius HOM05D005140 ORTHO05D006288 8.3e-168 594.3 428 70.6
PSO063G3549 Papaver somniferum HOM05D005140 ORTHO05D006288 8.3e-168 594.3 432 69.4
PSO782G2508 Papaver somniferum HOM05D005140 ORTHO05D006288 1.4e-167 593.6 432 69.4
Phvul.002G002400 Phaseolus vulgaris HOM05D005140 ORTHO05D006288 1.4e-167 593.6 441 67.8
DCAR_008319 Daucus carota HOM05D005140 ORTHO05D006288 7.0e-167 591.3 420 69.8
Ah.12g053860 Amaranthus hybridus HOM05D005140 ORTHO05D006288 4.6e-166 588.6 415 70.6
Gohir.A08G162300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 6.0e-166 588.2 443 68.8
arahy.Tifrunner.gnm1.ann1.FH98R9 Arachis hypogaea HOM05D005140 ORTHO05D006288 1.0e-165 587.4 432 67.8
arahy.Tifrunner.gnm1.ann1.W7TPG2 Arachis hypogaea HOM05D005140 ORTHO05D006288 1.0e-165 587.4 432 67.8
Actinidia31490 Actinidia chinensis HOM05D005140 ORTHO05D006288 1.7e-165 586.6 455 65.5
Psat2g175480 Pisum sativum HOM05D005140 ORTHO05D006288 1.7e-165 586.6 423 69.5
Peaxi162Scf00301g01111 Petunia axillaris HOM05D005140 ORTHO05D006288 3.9e-165 585.5 425 69.6
Potri.001G149900 Populus trichocarpa HOM05D005140 ORTHO05D006288 3.9e-165 585.5 416 69.5
Lj2g0026795 Lotus japonicus HOM05D005140 ORTHO05D006288 2.5e-164 582.8 424 69.8
MD00G1132300 Malus domestica HOM05D005140 ORTHO05D006288 2.5e-164 582.8 451 65.9
unitig_699.g19774 Utricularia gibba HOM05D005140 ORTHO05D006288 5.6e-164 581.6 427 68.9
ECA240G1687 Erigeron canadensis HOM05D005140 ORTHO05D006288 7.3e-164 581.3 427 67.4
vmacro14121 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 1.2e-163 580.5 437 67.3
MD06G1045500 Malus domestica HOM05D005140 ORTHO05D006288 3.1e-162 575.9 457 65.0
Duzib068G0986 Durio zibethinus HOM05D005140 ORTHO05D006288 4.0e-162 575.5 416 70.7
BcaC06g33554 Brassica carinata HOM05D005140 ORTHO05D006288 1.7e-160 570.1 421 66.0
BcaNung00074 Brassica carinata HOM05D005140 ORTHO05D006288 2.2e-160 569.7 423 65.5
Thhalv10024864m.g Eutrema salsugineum HOM05D005140 ORTHO05D006288 2.2e-160 569.7 417 66.9
Medtr5g013580 Medicago truncatula HOM05D005140 ORTHO05D006288 2.2e-160 569.7 424 68.2
Sp7g16510 Schrenkiella parvula HOM05D005140 ORTHO05D006288 1.1e-159 567.4 422 65.2
Carub.0007s2375 Capsella rubella HOM05D005140 ORTHO05D006288 1.9e-159 566.6 429 64.8
EL10Ac5g12239 Beta vulgaris HOM05D005140 ORTHO05D006288 2.4e-159 566.2 462 63.9
A03p50570 Brassica napus HOM05D005140 ORTHO05D006288 3.2e-159 565.8 430 64.9
TPR.G22969 Trifolium pratense HOM05D005140 ORTHO05D006288 7.1e-159 564.7 425 66.4
THA.LOC104798349 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 1.6e-158 563.5 430 64.7
Dinv28888 Davidia involucrata HOM05D005140 ORTHO05D006288 2.1e-158 563.1 411 68.9
Sabra01G0119900 Salix brachista HOM05D005140 ORTHO05D006288 2.1e-158 563.1 460 63.0
AT4G17620 Arabidopsis thaliana HOM05D005140 ORTHO05D006288 3.5e-158 562.4 420 65.2
BcaNung03452 Brassica carinata HOM05D005140 ORTHO05D006288 4.6e-158 562.0 417 65.9
CARHR224350 Cardamine hirsuta HOM05D005140 ORTHO05D006288 7.8e-158 561.2 421 64.4
BraA03t14147Z Brassica rapa HOM05D005140 ORTHO05D006288 2.3e-157 559.7 422 65.2
BolC7t45397H Brassica oleracea HOM05D005140 ORTHO05D006288 5.1e-157 558.5 434 63.8
C07p48890 Brassica napus HOM05D005140 ORTHO05D006288 3.3e-156 555.8 434 63.6
C01p11300 Brassica napus HOM05D005140 ORTHO05D006288 4.3e-156 555.4 427 63.9
HanXRQChr03g0089631 Helianthus annuus HOM05D005140 ORTHO05D006288 3.6e-155 552.4 430 65.3
BraA01t00912Z Brassica rapa HOM05D005140 ORTHO05D006288 2.3e-154 549.7 429 64.1
Nn1g00730 Nelumbo nucifera HOM05D005140 ORTHO05D006288 3.1e-154 549.3 419 67.5
A01p09690 Brassica napus HOM05D005140 ORTHO05D006288 4.4e-153 545.4 423 64.5
GSVIVG01013286001 Vitis vinifera HOM05D005140 ORTHO05D006288 7.6e-153 544.7 342 77.5
Ciclev10019303m.g Citrus clementina HOM05D005140 ORTHO05D006288 1.3e-152 543.9 395 70.1
AUR62007191 Chenopodium quinoa HOM05D005140 ORTHO05D006288 4.1e-151 538.9 378 71.2
CDE04G2928 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 7.1e-151 538.1 393 70.5
BcaC09g51625 Brassica carinata HOM05D005140 ORTHO05D006288 6.0e-150 535.0 420 63.8
ATR0665G273 Amborella trichopoda HOM05D005140 ORTHO05D006288 1.3e-149 533.9 421 63.7
BcaNung06713 Brassica carinata HOM05D005140 ORTHO05D006288 2.3e-149 533.1 397 66.2
Aa31LG6G380 Aethionema arabicum HOM05D005140 ORTHO05D006288 3.9e-149 532.3 435 62.3
Nitab4.5_0012059g0010 Nicotiana tabacum HOM05D005140 ORTHO05D006288 1.9e-148 530.0 450 63.1
MBI04_g38568_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 1.2e-147 527.3 393 67.7
Nitab4.5_0004689g0020 Nicotiana tabacum HOM05D005140 ORTHO05D006288 1.8e-146 523.5 434 63.4
Aa31LG9G15140 Aethionema arabicum HOM05D005140 ORTHO05D006288 2.3e-141 506.5 413 60.5
FAN18G3556 Fragaria x ananassa HOM05D005140 ORTHO05D006288 3.9e-141 505.8 393 66.7
THA.LOC104814458 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 2.5e-140 503.1 426 59.4
AUR62018812 Chenopodium quinoa HOM05D005140 ORTHO05D006288 3.6e-139 499.2 307 76.2
SGA_v2.0_scaffold6G03141 Striga asiatica HOM05D005140 ORTHO05D006288 5.8e-137 491.9 379 65.2
Zm00001eb287280 Zea mays HOM05D005140 ORTHO05D006288 2.4e-135 486.5 293 79.2
VMungo0239G0001 Vigna mungo HOM05D005140 ORTHO05D006288 9.3e-135 484.6 306 76.1
Os05g0392100 Oryza sativa ssp. japonica HOM05D005140 ORTHO05D006288 2.8e-131 473.0 332 71.4
MBI04_g46822_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 2.4e-130 469.9 342 69.9
Lj9A525T29 Lonicera japonica HOM05D005140 ORTHO05D006288 1.1e-127 461.1 424 60.1
Lj2C253G13 Lonicera japonica HOM05D005140 ORTHO05D006288 1.4e-127 460.7 434 57.6
Sc01g0007900 Simmondsia chinensis HOM05D005140 ORTHO05D006288 2.4e-122 443.4 319 70.5
AagrBONN_evm.TU.Sc2ySwM_344.2637 Anthoceros agrestis HOM05D005140 ORTHO05D006288 3.1e-114 416.4 388 56.2
Pp3c10_5020 Physcomitrium patens HOM05D005140 ORTHO05D006288 3.4e-113 412.9 470 48.5
Mapoly0062s0029 Marchantia polymorpha HOM05D005140 ORTHO05D006288 4.6e-110 402.5 354 58.2
Hma1.2p1_1672F.1_g296780 Hydrangea macrophylla HOM05D005140 ORTHO05D006288 1.5e-105 387.5 311 65.0
SHI07711 Sapria himalayana HOM05D005140 ORTHO05D006288 3.8e-104 382.9 317 62.8
GSVIVG01013283001 Vitis vinifera HOM05D005140 ORTHO05D006288 7.2e-103 378.6 430 50.7
CDE12G0612 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 1.4e-98 364.4 301 64.1
SMO259G0041 Selaginella moellendorffii HOM05D005140 ORTHO05D006288 1.2e-97 361.3 313 54.0
BolC1t01096H Brassica oleracea HOM05D005140 ORTHO05D006288 1.6e-94 350.9 218 73.4
Oeu017029.1 Olea europaea HOM05D005140 ORTHO05D006288 1.1e-82 311.6 190 76.8
CBR_g48842 Chara braunii HOM05D005140 ORTHO05D006288 2.9e-80 303.5 278 54.3
Peaxi162Scf00715g00010 Petunia axillaris HOM05D005140 ORTHO05D006288 1.6e-73 281.2 215 66.0
Cpa.g.sc98.58 Carica papaya HOM05D005140 ORTHO05D006288 3.8e-72 276.6 250 57.2
Psat1g146680 Pisum sativum HOM05D005140 ORTHO05D006288 6.2e-46 189.5 112 77.7
Oeu062963.3 Olea europaea HOM05D005140 ORTHO05D006288 4.0e-45 186.8 260 46.2
Oeu017031.1 Olea europaea HOM05D005140 ORTHO05D006288 7.8e-41 172.6 133 65.4
QL12p008508 Quercus lobata HOM05D005140 ORTHO05D006288 6.8e-37 159.5 254 55.5
MCO13G373 Micromonas commoda HOM05D005140 ORTHO05D006288 1.6e-33 148.3 289 34.3
SEGI_19334 Sequoiadendron giganteum HOM05D005140 ORTHO05D000001 3.1e-29 134.0 77 80.5
Thecc.03G238400 Theobroma cacao HOM05D005140 ORTHO05D006288 1.9e-26 124.8 145 54.5
Cre07.g338400 Chlamydomonas reinhardtii HOM05D005140 ORTHO05D006288 1.0e-24 119.0 257 33.1
MD10G1199900 Malus domestica HOM05D005140 ORTHO05D006288 6.6e-24 116.3 67 77.6
GSVIVG01001794001 Vitis vinifera HOM05D005140 ORTHO05D006288 2.9e-19 100.9 80 63.8
Cfa024662 Carpinus fangiana HOM05D005140 ORTHO05D006288 3.8e-19 100.5 211 34.1
Cpa.g.c32337.2 Carica papaya HOM05D005140 ORTHO05D006288 4.9e-19 100.1 113 54.9
DCAR_016064 Daucus carota HOM05D005140 ORTHO05D006288 4.8e-14 83.6 52 71.2
Gohir.A08G083762 Gossypium hirsutum HOM05D005140 ORTHO05D006288 6.7e-08 63.2 29 86.2
ECA233G4689 Erigeron canadensis HOM05D005140 ORTHO05D006288 1.3e-06 58.9 71 43.7


User provided reference genes

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