Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_026405 Vanilla planifolia HOM05D005387 ORTHO05D006711 5.4e-30 133.7 67 100.0
HPP92_023768 Vanilla planifolia HOM05D005387 ORTHO05D006711 3.5e-21 104.4 67 83.6
Zm00001eb417930 Zea mays HOM05D005387 ORTHO05D006711 3.7e-10 67.8 35 94.3
ClCG09G006960 Citrullus lanatus HOM05D005387 ORTHO05D006711 1.4e-09 65.9 36 88.9
Sed0006598 Sechium edule HOM05D005387 ORTHO05D006711 1.4e-09 65.9 36 88.9
TAR362G0175 Trochodendron aralioides HOM05D005387 ORTHO05D006711 1.4e-09 65.9 36 88.9
Manes.05G075500 Manihot esculenta HOM05D005387 ORTHO05D006711 1.8e-09 65.5 36 86.1
ECA247G0058 Erigeron canadensis HOM05D005387 ORTHO05D006711 2.4e-09 65.1 64 53.1
CANSAT25G2972 Cannabis sativa HOM05D005387 ORTHO05D006711 3.1e-09 64.7 36 86.1
CsaV3_7G028200 Cucumis sativus L. HOM05D005387 ORTHO05D006711 3.1e-09 64.7 36 86.1
Duzib211G0289 Durio zibethinus HOM05D005387 ORTHO05D006711 3.1e-09 64.7 36 83.3
MBI18_g32210_MAGBIO Magnolia biondii HOM05D005387 ORTHO05D006711 3.1e-09 64.7 36 86.1
Potri.002G054000 Populus trichocarpa HOM05D005387 ORTHO05D006711 4.0e-09 64.3 36 86.1
Sabra02G0043900 Salix brachista HOM05D005387 ORTHO05D006711 4.0e-09 64.3 36 86.1
MELO3C015844.2 Cucumis melo HOM05D005387 ORTHO05D006711 5.3e-09 63.9 36 86.1
Eucgr.K03375 Eucalyptus grandis HOM05D005387 ORTHO05D006711 5.3e-09 63.9 36 83.3
PGR044G0219 Punica granatum HOM05D005387 ORTHO05D006711 5.3e-09 63.9 38 78.9
Cfa006132 Carpinus fangiana HOM05D005387 ORTHO05D006711 6.9e-09 63.5 36 83.3
Haze_04719 Corylus avellana HOM05D005387 ORTHO05D006711 6.9e-09 63.5 36 83.3
AL1G12680 Arabidopsis lyrata HOM05D005387 ORTHO05D006711 9.0e-09 63.2 36 83.3
AT1G03190 Arabidopsis thaliana HOM05D005387 ORTHO05D006711 9.0e-09 63.2 36 83.3
Carub.0001s0233 Capsella rubella HOM05D005387 ORTHO05D006711 9.0e-09 63.2 36 83.3
Thhalv10006888m.g Eutrema salsugineum HOM05D005387 ORTHO05D006711 9.0e-09 63.2 36 83.3
Os05g0144800 Oryza sativa ssp. japonica HOM05D005387 ORTHO05D006711 9.0e-09 63.2 35 85.7
Phvul.004G095600 Phaseolus vulgaris HOM05D005387 ORTHO05D006711 9.0e-09 63.2 39 76.9
SHI14548 Sapria himalayana HOM05D005387 ORTHO05D006711 9.0e-09 63.2 36 83.3
Aqoxy5G00512 Aquilegia oxysepala HOM05D005387 ORTHO05D006711 1.2e-08 62.8 35 85.7
Migut.D00288 Erythranthe guttata HOM05D005387 ORTHO05D006711 1.2e-08 62.8 38 78.9
Medtr2g084735 Medicago truncatula HOM05D005387 ORTHO05D006711 1.2e-08 62.8 49 67.3
CSS0042122 Camellia sinensis var. sinensis HOM05D005387 ORTHO05D006711 1.5e-08 62.4 36 80.6
Gohir.A08G068200 Gossypium hirsutum HOM05D005387 ORTHO05D006711 1.5e-08 62.4 36 80.6
Gorai.004G081200 Gossypium raimondii HOM05D005387 ORTHO05D006711 1.5e-08 62.4 36 80.6
Lalb_Chr01g0009611 Lupinus albus HOM05D005387 ORTHO05D006711 1.5e-08 62.4 38 76.3
Thecc.01G280400 Theobroma cacao HOM05D005387 ORTHO05D006711 1.5e-08 62.4 36 80.6
TPR.G36709 Trifolium pratense HOM05D005387 ORTHO05D006711 1.5e-08 62.4 49 67.3
CiPaw.07G092300 Carya illinoinensis HOM05D005387 ORTHO05D006711 2.0e-08 62.0 36 80.6
Ca_24177_v3 Cicer arietinum L. HOM05D002851 ORTHO05D003084 2.0e-08 62.0 63 54.0
Lj2g0021203 Lotus japonicus HOM05D005387 ORTHO05D006711 2.0e-08 62.0 39 74.4
Nn4g26234 Nelumbo nucifera HOM05D005387 ORTHO05D006711 2.0e-08 62.0 36 77.8
QL12p022031 Quercus lobata HOM05D005387 ORTHO05D006711 2.0e-08 62.0 36 80.6
Sp1g02210 Schrenkiella parvula HOM05D005387 ORTHO05D006711 2.0e-08 62.0 36 83.3
VMungo0464G1141 Vigna mungo HOM05D005387 ORTHO05D006711 2.0e-08 62.0 39 74.4
ATR0626G059 Amborella trichopoda HOM05D005387 ORTHO05D006711 2.6e-08 61.6 37 83.8
BcaC07g36978 Brassica carinata HOM05D005387 ORTHO05D006711 2.6e-08 61.6 36 80.6
A08p37430 Brassica napus HOM05D005387 ORTHO05D006711 2.6e-08 61.6 36 80.6
C08p00480 Brassica napus HOM05D005387 ORTHO05D006711 2.6e-08 61.6 36 80.6
BolC8t46846H Brassica oleracea HOM05D005387 ORTHO05D006711 2.6e-08 61.6 36 80.6
BraA08t35641Z Brassica rapa HOM05D005387 ORTHO05D006711 2.6e-08 61.6 36 80.6
DCAR_002738 Daucus carota HOM05D005387 ORTHO05D006711 2.6e-08 61.6 36 77.8
Gohir.D08G076600 Gossypium hirsutum HOM05D005387 ORTHO05D006711 2.6e-08 61.6 36 77.8
Lj2A1174G27 Lonicera japonica HOM05D005387 ORTHO05D006711 2.6e-08 61.6 36 80.6
AUR62025819 Chenopodium quinoa HOM05D005387 ORTHO05D006711 3.4e-08 61.2 36 77.8
Glyma.16G167800 Glycine max HOM05D005387 ORTHO05D006711 3.4e-08 61.2 39 74.4
MD03G1266200 Malus domestica HOM05D005387 ORTHO05D006711 3.4e-08 61.2 37 83.8
GSVIVG01011125001 Vitis vinifera HOM05D005387 ORTHO05D006711 3.4e-08 61.2 36 80.6
Ciclev10018975m.g Citrus clementina HOM05D005387 ORTHO05D006711 4.5e-08 60.8 36 83.3
Hma1.2p1_0257F.1_g103540 Hydrangea macrophylla HOM05D005387 ORTHO05D006711 4.5e-08 60.8 36 77.8
SalBow4G1053 Salvia bowleyana HOM05D005387 ORTHO05D006711 4.5e-08 60.8 38 73.7
vmacro02566 Vaccinium macrocarpon HOM05D005387 ORTHO05D006711 4.5e-08 60.8 36 77.8
CDE06G0365 Ceratophyllum demersum HOM05D005387 ORTHO05D006711 5.8e-08 60.5 36 80.6
TWI23G0758 Tripterygium wilfordii HOM05D005387 ORTHO05D006711 5.8e-08 60.5 36 77.8
HanXRQChr10g0282751 Helianthus annuus HOM05D005387 ORTHO05D006711 7.6e-08 60.1 36 83.3
Oeu015966.1 Olea europaea HOM05D005387 ORTHO05D006711 7.6e-08 60.1 37 75.7
PSO210G3721 Papaver somniferum HOM05D005387 ORTHO05D006711 7.6e-08 60.1 38 73.7
Rhsim13G0024300 Rhododendron simsii HOM05D005387 ORTHO05D006711 7.6e-08 60.1 36 77.8
EL10Ac6g13926 Beta vulgaris HOM05D005387 ORTHO05D006711 1.0e-07 59.7 36 75.0
Glyma.02G082200 Glycine max HOM05D005387 ORTHO05D006711 1.0e-07 59.7 39 69.2
BolC8t52806H Brassica oleracea HOM05D005387 ORTHO05D006711 1.3e-07 59.3 36 77.8
FAN15G0991 Fragaria x ananassa HOM05D005387 ORTHO05D006711 1.3e-07 59.3 37 78.4
PSO832G0722 Papaver somniferum HOM05D005387 ORTHO05D006711 1.3e-07 59.3 38 73.7
Psat1g104680 Pisum sativum HOM05D005387 ORTHO05D006711 1.3e-07 59.3 39 74.4
Actinidia09142 Actinidia chinensis HOM05D005387 ORTHO05D006711 1.7e-07 58.9 36 75.0
Hund03003 Selenicereus undatus HOM05D005387 ORTHO05D006711 1.7e-07 58.9 36 75.0
THA.LOC104825999 Tarenaya hassleriana HOM05D005387 ORTHO05D006711 1.7e-07 58.9 50 66.0
Aa31LG1G9340 Aethionema arabicum HOM05D005387 ORTHO05D006711 2.2e-07 58.5 37 78.4
AUR62034034 Chenopodium quinoa HOM05D005387 ORTHO05D006711 2.2e-07 58.5 36 75.0
AUR62044203 Chenopodium quinoa HOM05D005387 ORTHO05D006711 2.2e-07 58.5 36 75.0
AUR62044240 Chenopodium quinoa HOM05D005387 ORTHO05D006711 2.2e-07 58.5 36 75.0
AUR62044301 Chenopodium quinoa HOM05D005387 ORTHO05D006711 2.2e-07 58.5 36 75.0
Dinv34746 Davidia involucrata HOM05D005387 ORTHO05D006711 2.9e-07 58.2 36 75.0
Gohir.A11G122400 Gossypium hirsutum HOM05D005387 ORTHO05D006711 4.9e-07 57.4 36 72.2
Gohir.D11G127700 Gossypium hirsutum HOM05D005387 ORTHO05D006711 4.9e-07 57.4 36 72.2
Gorai.007G136500 Gossypium raimondii HOM05D005387 ORTHO05D006711 4.9e-07 57.4 36 72.2
Mapoly0059s0089 Marchantia polymorpha HOM05D005387 ORTHO05D006711 4.9e-07 57.4 36 75.0
Pp3c10_16570 Physcomitrium patens HOM05D005387 ORTHO05D006711 4.9e-07 57.4 36 75.0
FvH4_2g23690 Fragaria vesca HOM05D005387 ORTHO05D006711 6.5e-07 57.0 37 75.7
FAN24G0367 Fragaria x ananassa HOM05D005387 ORTHO05D006711 6.5e-07 57.0 37 75.7
MD11G1286800 Malus domestica HOM05D005387 ORTHO05D006711 6.5e-07 57.0 35 80.0
arahy.Tifrunner.gnm1.ann1.48M1R9 Arachis hypogaea HOM05D005387 ORTHO05D006711 1.1e-06 56.2 38 76.3
arahy.Tifrunner.gnm1.ann1.4E1RNV Arachis hypogaea HOM05D005387 ORTHO05D006711 1.1e-06 56.2 38 76.3
AUR62017677 Chenopodium quinoa HOM05D005387 ORTHO05D006711 1.9e-06 55.5 36 69.4
Cc01_g19560 Coffea canephora HOM05D005387 ORTHO05D006711 1.9e-06 55.5 36 75.0
Nitab4.5_0006390g0070 Nicotiana tabacum HOM05D005387 ORTHO05D006711 1.9e-06 55.5 38 71.1
Solyc06g008970.4 Solanum lycopersicum HOM05D005387 ORTHO05D006711 1.9e-06 55.5 38 71.1
Sopen06g003750 Solanum pennellii HOM05D005387 ORTHO05D006711 1.9e-06 55.5 38 71.1
unitig_0.g111 Utricularia gibba HOM05D005387 ORTHO05D006711 1.9e-06 55.5 36 69.4
RcHm_v2.0_Chr6g0291151 Rosa chinensis HOM05D005387 ORTHO05D006711 2.5e-06 55.1 37 73.0
CAN.G1006.14 Capsicum annuum HOM05D005387 ORTHO05D006711 9.3e-06 53.1 38 68.4


User provided reference genes

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