Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_024264 Vanilla planifolia HOM05D004503 ORTHO05D005460 0.0e+00 1671.4 842 100.0
HPP92_024256 Vanilla planifolia HOM05D004503 ORTHO05D005460 0.0e+00 1589.7 839 96.1
TAR629G1355 Trochodendron aralioides HOM05D004503 ORTHO05D005460 0.0e+00 1397.9 840 81.8
GSVIVG01020844001 Vitis vinifera HOM05D004503 ORTHO05D005460 0.0e+00 1382.5 835 81.1
Dinv07955 Davidia involucrata HOM05D004503 ORTHO05D005460 0.0e+00 1382.1 840 80.7
Lj1C677T5 Lonicera japonica HOM05D004503 ORTHO05D005460 0.0e+00 1342.0 835 78.3
Actinidia12541 Actinidia chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1337.4 844 78.1
Sopen07g029580 Solanum pennellii HOM05D004503 ORTHO05D005460 0.0e+00 1337.4 842 77.1
Solyc07g056220.3 Solanum lycopersicum HOM05D004503 ORTHO05D005460 0.0e+00 1336.6 842 77.1
arahy.Tifrunner.gnm1.ann1.S01VYL Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1333.2 843 77.6
Nn4g24335 Nelumbo nucifera HOM05D004503 ORTHO05D005460 0.0e+00 1331.6 839 78.3
arahy.Tifrunner.gnm1.ann1.96CX7H Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1330.9 843 77.5
TWI14G0297 Tripterygium wilfordii HOM05D004503 ORTHO05D005460 0.0e+00 1327.4 847 77.0
CsaV3_4G031940 Cucumis sativus L. HOM05D004503 ORTHO05D005460 0.0e+00 1326.6 843 76.9
vmacro08730 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 0.0e+00 1325.8 921 72.6
CANSAT64G0633 Cannabis sativa HOM05D004503 ORTHO05D005460 0.0e+00 1324.7 838 77.2
PSO675G5402 Papaver somniferum HOM05D004503 ORTHO05D005460 0.0e+00 1324.3 835 76.8
Prupe.3G176600 Prunus persica HOM05D004503 ORTHO05D005460 0.0e+00 1323.5 843 76.6
PGR042G1526 Punica granatum HOM05D004503 ORTHO05D005460 0.0e+00 1323.1 846 77.3
Nitab4.5_0002251g0070 Nicotiana tabacum HOM05D004503 ORTHO05D005460 0.0e+00 1322.4 843 76.9
MELO3C026971.2 Cucumis melo HOM05D004503 ORTHO05D005460 0.0e+00 1321.2 843 76.5
Gorai.001G211500 Gossypium raimondii HOM05D004503 ORTHO05D005460 0.0e+00 1321.2 843 76.4
Thecc.01G170000 Theobroma cacao HOM05D004503 ORTHO05D005460 0.0e+00 1321.2 843 76.7
EL10Ac1g01630 Beta vulgaris HOM05D004503 ORTHO05D005460 0.0e+00 1318.9 839 76.2
Medtr3g046640 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1317.0 848 76.3
Aqoxy1G01732 Aquilegia oxysepala HOM05D004503 ORTHO05D005460 0.0e+00 1316.6 840 77.1
Peaxi162Scf00111g00222 Petunia axillaris HOM05D004503 ORTHO05D005460 0.0e+00 1315.4 906 71.7
Sc09g0009430 Simmondsia chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1315.1 839 76.4
Medtr0071s0030 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1314.3 848 76.2
Ca_14599_v3 Cicer arietinum L. HOM05D004503 ORTHO05D005460 0.0e+00 1313.9 848 76.4
Gohir.A07G183000 Gossypium hirsutum HOM05D004503 ORTHO05D005460 0.0e+00 1313.1 843 76.3
Migut.M00558 Erythranthe guttata HOM05D004503 ORTHO05D005460 0.0e+00 1312.7 840 75.2
SGA_v2.0_scaffold70G23615 Striga asiatica HOM05D004503 ORTHO05D005460 0.0e+00 1312.4 863 74.4
COL.COLO4_08894 Corchorus olitorius HOM05D004503 ORTHO05D005460 0.0e+00 1311.6 860 75.3
MSTRG.6739 Avicennia marina HOM05D004503 ORTHO05D005460 0.0e+00 1311.2 840 76.2
Lalb_Chr07g0191281 Lupinus albus HOM05D004503 ORTHO05D005460 0.0e+00 1308.9 842 76.2
AUR62026613 Chenopodium quinoa HOM05D004503 ORTHO05D005460 0.0e+00 1307.7 838 76.4
MD17G1136200 Malus domestica HOM05D004503 ORTHO05D005460 0.0e+00 1307.7 837 76.3
Sed0003027 Sechium edule HOM05D004503 ORTHO05D005460 0.0e+00 1307.0 843 76.2
CAN.G585.22 Capsicum annuum HOM05D004503 ORTHO05D005460 0.0e+00 1305.0 842 75.7
Glyma.18G109800 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1305.0 842 76.4
Psat5g185680 Pisum sativum HOM05D004503 ORTHO05D005460 0.0e+00 1303.9 848 75.8
Cc05_g09730 Coffea canephora HOM05D004503 ORTHO05D005460 0.0e+00 1302.7 840 75.4
VMungo0647G0468 Vigna mungo HOM05D004503 ORTHO05D005460 0.0e+00 1302.0 842 76.1
Glyma.08G307900 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1300.0 842 75.9
Phvul.006G022400 Phaseolus vulgaris HOM05D004503 ORTHO05D005460 0.0e+00 1299.6 842 75.8
Atru.chr6.2055 Acer truncatum HOM05D004503 ORTHO05D005460 0.0e+00 1297.7 841 75.7
AUR62034921 Chenopodium quinoa HOM05D004503 ORTHO05D005460 0.0e+00 1297.7 838 76.0
ClCG11G016490 Citrullus lanatus HOM05D004503 ORTHO05D005460 0.0e+00 1297.3 843 75.4
Lj6g0014906 Lotus japonicus HOM05D004503 ORTHO05D005460 0.0e+00 1295.0 846 75.2
Potri.005G204400 Populus trichocarpa HOM05D004503 ORTHO05D005460 0.0e+00 1291.9 845 74.7
HanXRQChr13g0387771 Helianthus annuus HOM05D004503 ORTHO05D005460 0.0e+00 1289.6 840 74.6
Duzib138G1342 Durio zibethinus HOM05D004503 ORTHO05D005460 0.0e+00 1286.9 843 75.3
THA.LOC104826541 Tarenaya hassleriana HOM05D004503 ORTHO05D005460 0.0e+00 1284.2 862 73.5
Ciclev10030701m.g Citrus clementina HOM05D004503 ORTHO05D005460 0.0e+00 1282.3 840 75.0
Lsat_1_v5_gn_8_31680 Lactuca sativa HOM05D004503 ORTHO05D005460 0.0e+00 1281.2 839 74.0
CSS0024997 Camellia sinensis var. sinensis HOM05D004503 ORTHO05D005460 0.0e+00 1280.0 855 74.5
RcHm_v2.0_Chr2g0152001 Rosa chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1278.5 854 73.4
Sabra05G0155000 Salix brachista HOM05D004503 ORTHO05D005460 0.0e+00 1276.9 895 71.1
CiPaw.13G152400 Carya illinoinensis HOM05D004503 ORTHO05D005460 0.0e+00 1275.4 844 75.5
ECA233G4498 Erigeron canadensis HOM05D004503 ORTHO05D005460 0.0e+00 1274.2 843 73.5
Potri.002G057800 Populus trichocarpa HOM05D004503 ORTHO05D005460 0.0e+00 1273.8 845 74.3
SEGI_01586 Sequoiadendron giganteum HOM05D004503 ORTHO05D005460 0.0e+00 1273.5 837 72.9
Rhsim12G0009900 Rhododendron simsii HOM05D004503 ORTHO05D005460 0.0e+00 1272.3 870 73.2
Hund26670 Selenicereus undatus HOM05D004503 ORTHO05D005460 0.0e+00 1265.8 940 68.4
Cpa.g.sc648.4 Carica papaya HOM05D004503 ORTHO05D005460 0.0e+00 1261.9 848 73.7
FAN05G2445 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1260.0 854 72.5
FvH4_6g38590 Fragaria vesca HOM05D004503 ORTHO05D005460 0.0e+00 1256.1 854 72.6
FAN14G5858 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1253.8 854 72.5
QL01p017640 Quercus lobata HOM05D004503 ORTHO05D005460 0.0e+00 1249.2 908 70.0
Manes.02G088300 Manihot esculenta HOM05D004503 ORTHO05D005460 0.0e+00 1246.9 848 73.0
ATR0772G123 Amborella trichopoda HOM05D004503 ORTHO05D005460 0.0e+00 1243.0 853 71.0
Aa31LG5G23690 Aethionema arabicum HOM05D004503 ORTHO05D005460 0.0e+00 1239.2 861 70.4
FAN02G3131 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1231.1 913 67.7
Thhalv10016232m.g Eutrema salsugineum HOM05D004503 ORTHO05D005460 0.0e+00 1224.9 863 70.2
FAN09G1308 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1223.0 913 67.0
Sp4g20340 Schrenkiella parvula HOM05D004503 ORTHO05D005460 0.0e+00 1223.0 863 70.1
CARHR132590 Cardamine hirsuta HOM05D004503 ORTHO05D005460 0.0e+00 1221.5 862 69.5
A03p21010 Brassica napus HOM05D004503 ORTHO05D005460 0.0e+00 1221.1 863 70.1
BraA03t11340Z Brassica rapa HOM05D004503 ORTHO05D005460 0.0e+00 1221.1 863 70.1
BcaC01g05572 Brassica carinata HOM05D004503 ORTHO05D005460 0.0e+00 1220.7 863 70.1
C03p24750 Brassica napus HOM05D004503 ORTHO05D005460 0.0e+00 1220.7 863 70.1
BolC3t14864H Brassica oleracea HOM05D004503 ORTHO05D005460 0.0e+00 1220.7 863 70.1
Carub.0004s1999 Capsella rubella HOM05D004503 ORTHO05D005460 0.0e+00 1220.3 862 69.6
HanXRQChr13g0403751 Helianthus annuus HOM05D004503 ORTHO05D005460 0.0e+00 1219.9 785 74.8
AL4G35000 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 0.0e+00 1217.2 862 69.8
AT2G38020 Arabidopsis thaliana HOM05D004503 ORTHO05D005460 0.0e+00 1212.2 862 69.5
Gohir.D07G189800 Gossypium hirsutum HOM05D004503 ORTHO05D005460 0.0e+00 1187.2 760 76.4
Eucgr.A02017 Eucalyptus grandis HOM05D004503 ORTHO05D005460 0.0e+00 1142.5 726 76.6
Os01g0666800 Oryza sativa ssp. japonica HOM05D004503 ORTHO05D005460 0.0e+00 1124.4 884 66.3
Ah.05g168350 Amaranthus hybridus HOM05D004503 ORTHO05D005460 0.0e+00 1099.7 838 66.3
Mapoly0052s0038 Marchantia polymorpha HOM05D004503 ORTHO05D005460 0.0e+00 1096.6 840 62.1
Pp3c13_19740 Physcomitrium patens HOM05D004503 ORTHO05D005460 0.0e+00 1093.2 834 63.2
DCAR_013322 Daucus carota HOM05D004503 ORTHO05D005460 0.0e+00 1088.6 838 65.6
SMO358G0621 Selaginella moellendorffii HOM05D004503 ORTHO05D005460 9.4e-297 1023.5 838 59.7
MBI10_g21107_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 5.7e-294 1014.2 849 65.4
Cfa009838 Carpinus fangiana HOM05D004503 ORTHO05D005460 4.0e-287 991.5 849 62.4
PSO063G7036 Papaver somniferum HOM05D004503 ORTHO05D005460 6.3e-285 984.2 622 75.6
Haze_23205 Corylus avellana HOM05D004503 ORTHO05D005460 4.4e-278 961.4 1139 49.5
BcaB01g03734 Brassica carinata HOM05D004503 ORTHO05D005460 2.0e-267 926.0 694 68.0
vmacro23147 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 3.9e-258 895.2 726 65.3
BcaNung06337 Brassica carinata HOM05D004503 ORTHO05D005460 1.6e-256 889.8 803 58.2
SHI12362 Sapria himalayana HOM05D004503 ORTHO05D005460 2.1e-232 809.7 618 64.6
BcaC01g05574 Brassica carinata HOM05D004503 ORTHO05D005460 3.3e-217 759.2 683 58.7
MBI10_g05864_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 1.8e-207 726.9 601 64.1
Nitab4.5_0027860g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 9.0e-207 724.5 471 74.5
CDE04G0954 Ceratophyllum demersum HOM05D004503 ORTHO05D005460 6.7e-194 681.8 430 78.6
Oeu020048.5 Olea europaea HOM05D004503 ORTHO05D005460 4.8e-192 675.6 469 73.6
PGSC0003DMG400017305 Solanum tuberosum HOM05D004503 ORTHO05D005460 1.5e-188 664.1 405 77.3
CBR_g46726 Chara braunii HOM05D004503 ORTHO05D005460 9.1e-183 644.8 848 42.2
PRCOL_00002554 Prasinoderma coloniale HOM05D004503 ORTHO05D005460 1.6e-163 580.9 855 38.9
Oeu010987.1 Olea europaea HOM05D004503 ORTHO05D005460 2.0e-161 573.9 356 75.6
Nitab4.5_0010124g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 5.4e-159 565.8 366 77.3
TPR.G25270 Trifolium pratense HOM05D004503 ORTHO05D005460 6.8e-154 548.9 341 79.5
Cfa025981 Carpinus fangiana HOM05D004503 ORTHO05D005460 7.1e-143 512.3 825 36.1
Cre03.g199311 Chlamydomonas reinhardtii HOM05D004503 ORTHO05D005460 6.0e-126 456.1 1005 31.3
TPR.G16790 Trifolium pratense HOM05D004503 ORTHO05D005460 9.0e-122 442.2 431 55.0
AagrBONN_evm.TU.Sc2ySwM_368.858 Anthoceros agrestis HOM05D004503 ORTHO05D005460 1.6e-115 421.4 331 58.0
MBI10_g02225_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 9.0e-114 415.6 260 77.3
BcaB02g09224 Brassica carinata HOM05D004503 ORTHO05D005460 4.3e-108 396.7 593 42.5
AL3G43330 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 4.5e-105 386.7 374 56.1
AagrBONN_evm.TU.Sc2ySwM_368.859 Anthoceros agrestis HOM05D004503 ORTHO05D005460 1.8e-90 338.2 332 50.0
Actinidia25072 Actinidia chinensis HOM05D004503 ORTHO05D005460 1.1e-82 312.4 255 64.7
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 1.3e-75 288.9 217 65.9
PGR042G2164 Punica granatum HOM05D004503 ORTHO05D005460 2.9e-72 277.7 165 81.8
AagrBONN_evm.TU.Sc2ySwM_117.438 Anthoceros agrestis HOM05D004503 ORTHO05D005460 8.0e-70 269.6 320 44.7
BcaB01g03733 Brassica carinata HOM05D004503 ORTHO05D005460 3.5e-65 254.2 149 76.5
TPR.G20801 Trifolium pratense HOM05D004503 ORTHO05D005460 2.9e-43 181.4 97 85.6
Lsat_1_v5_gn_2_4101 Lactuca sativa HOM05D004503 ORTHO05D005460 8.3e-35 153.3 97 73.2
Nitab4.5_0010753g0030 Nicotiana tabacum HOM05D004503 ORTHO05D005460 1.4e-34 152.5 111 66.7
Lsat_1_v5_gn_8_146460 Lactuca sativa HOM05D004503 ORTHO05D005460 4.3e-31 141.0 101 67.3
Lsat_1_v5_gn_9_81860 Lactuca sativa HOM05D004503 ORTHO05D005460 2.1e-30 138.7 94 72.3
Lsat_1_v5_gn_3_97321 Lactuca sativa HOM05D004503 ORTHO05D005460 4.7e-30 137.5 104 66.3
Lsat_1_v5_gn_9_107141 Lactuca sativa HOM05D004503 ORTHO05D005460 4.0e-29 134.4 85 75.3
Lsat_1_v5_gn_1_120320 Lactuca sativa HOM05D004503 ORTHO05D005460 6.8e-29 133.7 91 71.4
Lsat_1_v5_gn_4_94880 Lactuca sativa HOM05D001336 ORTHO05D001211 4.4e-28 131.0 87 72.4
Lsat_1_v5_gn_9_102961 Lactuca sativa HOM05D004503 ORTHO05D005460 4.4e-28 131.0 105 63.8
Lsat_1_v5_gn_5_109060 Lactuca sativa HOM05D004503 ORTHO05D005460 3.7e-27 127.9 106 63.2
MBI10_g02227_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 1.1e-26 126.3 118 61.0
Nitab4.5_0010753g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 1.7e-24 119.0 187 44.4
FvH4_6g38010 Fragaria vesca HOM05D004503 ORTHO05D005460 3.0e-24 118.2 129 52.7
Lsat_1_v5_gn_6_107780 Lactuca sativa HOM05D004503 ORTHO05D003526 3.9e-24 117.9 96 61.5
TPR.G6024 Trifolium pratense HOM05D004503 ORTHO05D005460 1.1e-23 116.3 67 74.6
Lsat_1_v5_gn_2_120 Lactuca sativa HOM05D003203 ORTHO05D003526 3.3e-23 114.8 105 55.2
Lsat_1_v5_gn_0_13460 Lactuca sativa HOM05D003536 ORTHO05D004233 4.3e-23 114.4 100 59.0
Lsat_1_v5_gn_2_105761 Lactuca sativa HOM05D001000 ORTHO05D001896 7.3e-23 113.6 64 79.7
Lsat_1_v5_gn_1_93381 Lactuca sativa HOM05D003203 ORTHO05D003526 4.7e-22 110.9 91 62.6
Lsat_1_v5_gn_8_98160 Lactuca sativa HOM05D004503 ORTHO05D005460 2.6e-20 105.1 89 59.6
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 4.1e-18 97.8 192 34.4
Lsat_1_v5_gn_4_100901 Lactuca sativa HOM05D004503 ORTHO05D005460 3.5e-17 94.7 68 66.2
Lsat_1_v5_gn_2_51260 Lactuca sativa HOM05D001336 ORTHO05D001211 1.0e-16 93.2 52 82.7
Lsat_1_v5_gn_8_84700 Lactuca sativa HOM05D004503 ORTHO05D005460 3.0e-16 91.7 52 80.8
Lsat_1_v5_gn_2_36800 Lactuca sativa HOM05D004503 ORTHO05D005460 3.9e-16 91.3 61 68.9
Lsat_1_v5_gn_8_13240 Lactuca sativa HOM05D004503 ORTHO05D005460 5.1e-16 90.9 81 59.3
Lsat_1_v5_gn_8_75300 Lactuca sativa HOM05D004503 ORTHO05D005460 5.8e-12 77.4 115 41.7
TPR.G24652 Trifolium pratense HOM05D004503 ORTHO05D005460 1.3e-11 76.3 52 76.9
C04p09630 Brassica napus HOM05D004503 ORTHO05D005460 1.9e-10 72.4 87 49.4
BolC4t22570H Brassica oleracea HOM05D004503 ORTHO05D005460 1.9e-10 72.4 87 49.4
Lsat_1_v5_gn_8_136521 Lactuca sativa HOM05D004503 ORTHO05D000404 7.1e-10 70.5 80 47.5
Rhsim08G0005700 Rhododendron simsii HOM05D004503 ORTHO05D037450 2.1e-09 68.9 85 47.1
Lsat_1_v5_gn_4_85140 Lactuca sativa HOM05D003203 ORTHO05D003526 2.7e-09 68.6 37 86.5
MBI10_g02226_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 2.3e-08 65.5 36 83.3
SalBow8G3309 Salvia bowleyana HOM05D004503 ORTHO05D005460 6.6e-08 63.9 49 67.3
Lsat_1_v5_gn_6_24580 Lactuca sativa HOM05D003889 ORTHO05D004407 1.1e-07 63.2 39 79.5


User provided reference genes

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