Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_018502 Vanilla planifolia HOM05D001054 ORTHO05D007110 0.0e+00 1140.6 560 100.0
MBI19_g10811_MAGBIO Magnolia biondii HOM05D001054 ORTHO05D007110 1.9e-245 852.4 531 77.6
Nn7g37208 Nelumbo nucifera HOM05D001054 ORTHO05D007110 5.4e-240 834.3 532 74.6
PSO541G5579 Papaver somniferum HOM05D001054 ORTHO05D007110 7.0e-240 833.9 478 80.5
Sed0024674 Sechium edule HOM05D001054 ORTHO05D007110 2.0e-239 832.4 479 80.4
Thecc.01G069100 Theobroma cacao HOM05D001054 ORTHO05D007110 2.0e-239 832.4 530 75.7
PSO675G2247 Papaver somniferum HOM05D001054 ORTHO05D007110 3.5e-239 831.6 478 80.3
Lj7C88G8 Lonicera japonica HOM05D001054 ORTHO05D007110 4.6e-239 831.2 533 75.8
Aa31LG6G14390 Aethionema arabicum HOM05D001054 ORTHO05D007110 7.8e-239 830.5 550 73.8
MSTRG.23690 Avicennia marina HOM05D001054 ORTHO05D007110 1.3e-238 829.7 530 75.7
Manes.13G113500 Manihot esculenta HOM05D001054 ORTHO05D007110 1.3e-238 829.7 478 80.8
TAR625G0225 Trochodendron aralioides HOM05D001054 ORTHO05D007110 1.3e-238 829.7 553 72.2
Oeu013280.1 Olea europaea HOM05D001054 ORTHO05D007110 3.0e-238 828.6 531 75.9
CANSAT01G2549 Cannabis sativa HOM05D001054 ORTHO05D007110 6.6e-238 827.4 530 76.2
CsaV3_6G043910 Cucumis sativus L. HOM05D001054 ORTHO05D007110 6.6e-238 827.4 549 73.2
TWI09G0178 Tripterygium wilfordii HOM05D001054 ORTHO05D007110 6.6e-238 827.4 531 75.1
Cpa.g.sc6.46 Carica papaya HOM05D001054 ORTHO05D007110 1.5e-237 826.2 532 74.8
AL7G13250 Arabidopsis lyrata HOM05D001054 ORTHO05D007110 4.3e-237 824.7 547 73.5
Migut.H00367 Erythranthe guttata HOM05D001054 ORTHO05D007110 7.3e-237 823.9 532 74.6
Gorai.008G080600 Gossypium raimondii HOM05D001054 ORTHO05D007110 7.3e-237 823.9 541 73.0
TAR628G0943 Trochodendron aralioides HOM05D001054 ORTHO05D007110 9.5e-237 823.5 478 79.3
Sp7g35190 Schrenkiella parvula HOM05D001054 ORTHO05D007110 1.2e-236 823.2 485 79.2
Carub.0007s0278 Capsella rubella HOM05D001054 ORTHO05D007110 1.6e-236 822.8 547 72.9
Thhalv10024858m.g Eutrema salsugineum HOM05D001054 ORTHO05D007110 1.6e-236 822.8 549 72.9
FvH4_1g17270 Fragaria vesca HOM05D001054 ORTHO05D007110 4.7e-236 821.2 549 73.2
AT4G37510 Arabidopsis thaliana HOM05D001054 ORTHO05D007110 8.1e-236 820.5 547 73.1
Eucgr.C03692 Eucalyptus grandis HOM05D001054 ORTHO05D007110 8.1e-236 820.5 547 72.8
Duzib264G0621 Durio zibethinus HOM05D001054 ORTHO05D007110 1.1e-235 820.1 478 79.7
Gohir.D12G073300 Gossypium hirsutum HOM05D001054 ORTHO05D007110 1.4e-235 819.7 541 72.6
THA.LOC104807624 Tarenaya hassleriana HOM05D001054 ORTHO05D007110 1.4e-235 819.7 543 73.8
HanXRQChr14g0441861 Helianthus annuus HOM05D001054 ORTHO05D007110 1.8e-235 819.3 535 74.8
Hma1.2p1_0017F.1_g012090 Hydrangea macrophylla HOM05D001054 ORTHO05D007110 1.8e-235 819.3 532 75.4
Sed0014779 Sechium edule HOM05D001054 ORTHO05D007110 1.8e-235 819.3 550 72.5
Cc07_g06840 Coffea canephora HOM05D001054 ORTHO05D007110 4.0e-235 818.1 532 74.8
Aqoxy2G00045 Aquilegia oxysepala HOM05D001054 ORTHO05D007110 5.2e-235 817.8 478 79.1
Eucgr.C03920 Eucalyptus grandis HOM05D001054 ORTHO05D007110 5.2e-235 817.8 478 79.7
SalBow6G1211 Salvia bowleyana HOM05D001054 ORTHO05D007110 5.2e-235 817.8 539 73.1
Ciclev10025341m.g Citrus clementina HOM05D001054 ORTHO05D007110 8.9e-235 817.0 545 73.0
COL.COLO4_11542 Corchorus olitorius HOM05D001054 ORTHO05D007110 2.6e-234 815.5 526 74.7
Lsat_1_v5_gn_2_83701 Lactuca sativa HOM05D001054 ORTHO05D007110 2.6e-234 815.5 545 73.0
Atru.chr3.194 Acer truncatum HOM05D001054 ORTHO05D007110 3.4e-234 815.1 539 73.3
Os01g0810100 Oryza sativa ssp. japonica HOM05D001054 ORTHO05D007110 3.4e-234 815.1 482 79.7
ATR1096G061 Amborella trichopoda HOM05D001054 ORTHO05D007110 5.8e-234 814.3 540 72.6
ClCG01G017380 Citrullus lanatus HOM05D001054 ORTHO05D007110 5.8e-234 814.3 545 73.0
FAN19G1445 Fragaria x ananassa HOM05D001054 ORTHO05D007110 5.8e-234 814.3 558 72.0
PGR004G0129 Punica granatum HOM05D001054 ORTHO05D007110 1.7e-233 812.8 532 74.2
CARHR245910 Cardamine hirsuta HOM05D001054 ORTHO05D007110 2.2e-233 812.4 545 72.3
Atru.chr3.165 Acer truncatum HOM05D001054 ORTHO05D007110 3.7e-233 811.6 542 73.2
Prupe.6G223800 Prunus persica HOM05D001054 ORTHO05D007110 6.4e-233 810.8 530 73.6
BcaNung03665 Brassica carinata HOM05D001054 ORTHO05D007110 1.1e-232 810.1 487 78.2
A01p01450 Brassica napus HOM05D001054 ORTHO05D007110 1.1e-232 810.1 543 72.6
C01p01620 Brassica napus HOM05D001054 ORTHO05D007110 1.1e-232 810.1 487 78.2
BolC1t00157H Brassica oleracea HOM05D001054 ORTHO05D007110 1.9e-232 809.3 543 72.2
BraA01t00139Z Brassica rapa HOM05D001054 ORTHO05D007110 1.9e-232 809.3 543 72.4
CiPaw.01G007000 Carya illinoinensis HOM05D001054 ORTHO05D007110 3.2e-232 808.5 479 79.3
CDE04G1953 Ceratophyllum demersum HOM05D001054 ORTHO05D007110 4.1e-232 808.1 531 73.4
PGSC0003DMG400023692 Solanum tuberosum HOM05D001054 ORTHO05D007110 4.1e-232 808.1 532 73.5
Solyc10g080040.3 Solanum lycopersicum HOM05D001054 ORTHO05D007110 5.4e-232 807.7 546 72.0
Sopen10g030650 Solanum pennellii HOM05D001054 ORTHO05D007110 7.1e-232 807.4 532 73.5
MELO3C007616.2 Cucumis melo HOM05D001054 ORTHO05D007110 9.2e-232 807.0 571 69.7
Cfa004102 Carpinus fangiana HOM05D001054 ORTHO05D007110 1.2e-231 806.6 529 74.3
FAN23G1327 Fragaria x ananassa HOM05D001054 ORTHO05D007110 1.6e-231 806.2 568 70.6
DCAR_010834 Daucus carota HOM05D001054 ORTHO05D007110 6.0e-231 804.3 543 71.6
FAN26G1436 Fragaria x ananassa HOM05D001054 ORTHO05D007110 1.0e-230 803.5 584 68.8
Sabra07G0046600 Salix brachista HOM05D001054 ORTHO05D007110 1.7e-230 802.7 542 70.7
Potri.007G053000 Populus trichocarpa HOM05D001054 ORTHO05D007110 1.5e-229 799.7 542 70.3
Nitab4.5_0002331g0050 Nicotiana tabacum HOM05D001054 ORTHO05D007110 1.9e-229 799.3 478 79.3
RcHm_v2.0_Chr2g0107461 Rosa chinensis HOM05D001054 ORTHO05D007110 1.9e-229 799.3 608 66.6
Sc16g0004970 Simmondsia chinensis HOM05D001054 ORTHO05D007110 2.5e-229 798.9 542 72.1
BcaNung05084 Brassica carinata HOM05D001054 ORTHO05D007110 3.3e-229 798.5 548 71.5
Nitab4.5_0006689g0010 Nicotiana tabacum HOM05D001054 ORTHO05D007110 3.3e-229 798.5 478 79.3
AUR62003982 Chenopodium quinoa HOM05D001054 ORTHO05D007110 5.6e-229 797.7 531 72.7
AUR62040267 Chenopodium quinoa HOM05D001054 ORTHO05D007110 1.2e-228 796.6 531 72.7
Rhsim10G0102900 Rhododendron simsii HOM05D001054 ORTHO05D007110 3.6e-228 795.0 527 72.5
SGA_v2.0_scaffold15G07420 Striga asiatica HOM05D001054 ORTHO05D007110 5.2e-227 791.2 519 73.8
EL10Ac6g15648 Beta vulgaris HOM05D001054 ORTHO05D007110 1.5e-226 789.6 543 70.7
Peaxi162Scf00365g00936 Petunia axillaris HOM05D001054 ORTHO05D007110 2.0e-226 789.3 476 77.7
TPR.G20955 Trifolium pratense HOM05D001054 ORTHO05D007110 2.0e-226 789.3 529 72.4
Glyma.01G192200 Glycine max HOM05D001054 ORTHO05D007110 9.9e-226 786.9 534 72.7
Ca_24720_v3 Cicer arietinum L. HOM05D001054 ORTHO05D007110 2.9e-225 785.4 537 70.9
Medtr5g016070 Medicago truncatula HOM05D001054 ORTHO05D007110 2.9e-225 785.4 539 71.1
SGA_v2.0_scaffold72G24093 Striga asiatica HOM05D001054 ORTHO05D007110 4.9e-225 784.6 531 71.6
Lj2g0007837 Lotus japonicus HOM05D001054 ORTHO05D007110 2.4e-224 782.3 538 72.5
Hund13932 Selenicereus undatus HOM05D001054 ORTHO05D007110 3.2e-224 781.9 480 76.0
unitig_0.g506 Utricularia gibba HOM05D001054 ORTHO05D007110 3.2e-224 781.9 477 77.8
Haze_15309 Corylus avellana HOM05D001054 ORTHO05D007110 6.0e-223 777.7 549 70.5
Glyma.11G049900 Glycine max HOM05D001054 ORTHO05D007110 7.8e-223 777.3 530 72.6
Psat2g170280 Pisum sativum HOM05D001054 ORTHO05D007110 3.0e-222 775.4 540 70.4
VMungo1215G2035 Vigna mungo HOM05D001054 ORTHO05D007110 3.3e-221 771.9 539 70.9
HPP92_017544 Vanilla planifolia HOM05D001054 ORTHO05D007110 4.3e-221 771.5 480 75.2
DCAR_021470 Daucus carota HOM05D001054 ORTHO05D007110 7.3e-221 770.8 534 71.0
Phvul.002G012600 Phaseolus vulgaris HOM05D001054 ORTHO05D007110 1.2e-220 770.0 539 70.5
Lalb_Chr05g0213551 Lupinus albus HOM05D001054 ORTHO05D007110 1.4e-219 766.5 478 75.5
arahy.Tifrunner.gnm1.ann1.AR4BCX Arachis hypogaea HOM05D001054 ORTHO05D007110 4.0e-219 765.0 533 70.4
arahy.Tifrunner.gnm1.ann1.UKA06W Arachis hypogaea HOM05D001054 ORTHO05D007110 1.5e-218 763.1 533 70.2
arahy.Tifrunner.gnm1.ann1.S94KHE Arachis hypogaea HOM05D001054 ORTHO05D007110 4.4e-218 761.5 548 68.4
arahy.Tifrunner.gnm1.ann1.V4EKGG Arachis hypogaea HOM05D001054 ORTHO05D007110 1.7e-217 759.6 548 68.4
arahy.Tifrunner.gnm1.ann1.5YK3TE Arachis hypogaea HOM05D001054 ORTHO05D007110 1.9e-216 756.1 529 69.6
Lalb_Chr09g0323511 Lupinus albus HOM05D001054 ORTHO05D007110 1.9e-216 756.1 489 73.6
arahy.Tifrunner.gnm1.ann1.SB8Z2H Arachis hypogaea HOM05D001054 ORTHO05D007110 3.4e-210 735.3 552 66.3
Lj4g0019986 Lotus japonicus HOM05D001054 ORTHO05D007110 7.6e-210 734.2 540 67.6
CSS0030463 Camellia sinensis var. sinensis HOM05D001054 ORTHO05D007110 2.9e-209 732.3 522 69.5
Phvul.003G236900 Phaseolus vulgaris HOM05D001054 ORTHO05D007110 1.9e-208 729.6 530 67.5
VMungo0251G1033 Vigna mungo HOM05D001054 ORTHO05D007110 3.2e-208 728.8 527 67.7
Zm00001eb150280 Zea mays HOM05D001054 ORTHO05D007110 2.4e-203 712.6 446 75.3
Medtr4g095410 Medicago truncatula HOM05D001054 ORTHO05D007110 1.4e-200 703.4 485 69.7
Ah.02g125600 Amaranthus hybridus HOM05D001054 ORTHO05D007110 5.5e-200 701.4 426 76.8
ECA238G1085 Erigeron canadensis HOM05D001054 ORTHO05D007110 2.3e-198 696.0 400 79.8
TPR.G23864 Trifolium pratense HOM05D001054 ORTHO05D007110 4.8e-196 688.3 463 70.6
Gohir.A12G075200 Gossypium hirsutum HOM05D001054 ORTHO05D007110 2.1e-183 646.4 445 71.5
Psat4g083600 Pisum sativum HOM05D001054 ORTHO05D007110 1.1e-176 624.0 403 72.2
Actinidia36442 Actinidia chinensis HOM05D001054 ORTHO05D007110 3.4e-170 602.4 423 69.0
CSS0024742 Camellia sinensis var. sinensis HOM05D001054 ORTHO05D007110 2.9e-169 599.4 331 81.9
Dinv26904 Davidia involucrata HOM05D001054 ORTHO05D007110 8.5e-169 597.8 399 73.4
HPP92_017568 Vanilla planifolia HOM05D001054 ORTHO05D007110 1.2e-154 550.8 408 67.2
Pp3c5_10700 Physcomitrium patens HOM05D001054 ORTHO05D007110 4.4e-149 532.3 468 56.2
Mapoly0005s0153 Marchantia polymorpha HOM05D001054 ORTHO05D007110 9.1e-147 524.6 484 53.7
GSVIVG01000148001 Vitis vinifera HOM05D001054 ORTHO05D007110 1.9e-144 516.9 285 82.8
AL5G41245 Arabidopsis lyrata HOM05D001054 ORTHO05D007110 1.4e-139 500.7 416 63.2
SMO119G0428 Selaginella moellendorffii HOM05D001054 ORTHO05D007110 7.0e-131 471.9 451 52.8
SEGI_29234 Sequoiadendron giganteum HOM05D001054 ORTHO05D007110 2.5e-128 463.4 361 61.2
vmacro05387 Vaccinium macrocarpon HOM05D001054 ORTHO05D007110 2.3e-126 456.8 346 64.2
AagrBONN_evm.TU.Sc2ySwM_368.879 Anthoceros agrestis HOM05D001054 ORTHO05D007110 3.2e-123 446.4 468 50.6
Glyma.05G104100 Glycine max HOM05D001054 ORTHO05D007110 2.2e-108 397.1 350 59.7
vmacro05388 Vaccinium macrocarpon HOM05D001054 ORTHO05D007110 4.9e-92 342.8 209 78.0
MD15G1293700 Malus domestica HOM05D001054 ORTHO05D007110 2.7e-82 310.5 181 77.9
Duzib147G0207 Durio zibethinus HOM05D001054 ORTHO05D007110 9.0e-78 295.4 181 76.2
FAN28G0670 Fragaria x ananassa HOM05D001054 ORTHO05D007110 3.9e-73 280.0 224 65.2
AL7G13080 Arabidopsis lyrata HOM05D001054 ORTHO05D007110 1.4e-70 271.6 172 72.7
SEGI_10508 Sequoiadendron giganteum HOM05D001054 ORTHO05D007110 4.5e-53 213.4 135 71.9
Actinidia11996 Actinidia chinensis HOM05D001054 ORTHO05D007110 9.4e-43 179.1 115 75.7
Eucgr.C03694 Eucalyptus grandis HOM05D001054 ORTHO05D026867 4.8e-39 166.8 102 74.5
Actinidia11995 Actinidia chinensis HOM05D001054 ORTHO05D038022 2.7e-34 151.0 80 87.5
Oeu038701.1 Olea europaea HOM05D001054 ORTHO05D038022 1.5e-27 128.6 67 86.6
AT2G48121 Arabidopsis thaliana HOM05D001054 ORTHO05D026867 2.1e-18 98.2 56 80.4
A03p65210 Brassica napus HOM05D001054 ORTHO05D026867 2.1e-18 98.2 66 68.2
BraA03t15579Z Brassica rapa HOM05D001054 ORTHO05D026867 2.1e-18 98.2 66 68.2
C07p62420 Brassica napus HOM05D001054 ORTHO05D007110 6.8e-17 93.2 53 77.4
BcaNung02059 Brassica carinata HOM05D001054 ORTHO05D007110 8.9e-17 92.8 50 78.0
Sed0007349 Sechium edule HOM05D001054 ORTHO05D007110 2.6e-08 64.7 107 37.4


User provided reference genes

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