Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_016455 Vanilla planifolia HOM05D003283 ORTHO05D004037 3.7e-76 288.1 143 100.0
HPP92_016452 Vanilla planifolia HOM05D003283 ORTHO05D004037 1.5e-56 223.0 112 97.3
CSS0033711 Camellia sinensis var. sinensis HOM05D003283 ORTHO05D004037 5.9e-34 147.9 113 61.9
MBI05_g00384_MAGBIO Magnolia biondii HOM05D003283 ORTHO05D004037 1.3e-33 146.7 112 64.3
Peaxi162Scf00009g00230 Petunia axillaris HOM05D003283 ORTHO05D004037 1.3e-33 146.7 119 59.7
Lj9A461G45 Lonicera japonica HOM05D003283 ORTHO05D004037 1.7e-33 146.4 113 59.3
CiPaw.11G042000 Carya illinoinensis HOM05D003283 ORTHO05D004037 8.6e-33 144.1 112 58.0
Sopen03g032070 Solanum pennellii HOM05D003283 ORTHO05D004037 1.9e-32 142.9 109 61.5
Dinv19938 Davidia involucrata HOM05D003283 ORTHO05D004037 3.3e-32 142.1 113 59.3
PGSC0003DMG400018089 Solanum tuberosum HOM05D003283 ORTHO05D004037 3.3e-32 142.1 109 59.6
Haze_07348 Corylus avellana HOM05D003283 ORTHO05D004037 4.3e-32 141.7 112 58.0
Oeu037298.1 Olea europaea HOM05D003283 ORTHO05D004037 4.3e-32 141.7 113 58.4
Potri.015G063100 Populus trichocarpa HOM05D003283 ORTHO05D004037 4.3e-32 141.7 112 57.1
Cc04_g17070 Coffea canephora HOM05D003283 ORTHO05D004037 7.3e-32 141.0 109 59.6
FvH4_5g15230 Fragaria vesca HOM05D003283 ORTHO05D004037 9.5e-32 140.6 112 56.2
FAN18G1573 Fragaria x ananassa HOM05D003283 ORTHO05D004037 9.5e-32 140.6 112 56.2
HanXRQChr05g0158061 Helianthus annuus HOM05D003283 ORTHO05D004037 9.5e-32 140.6 113 57.5
PSO017G6266 Papaver somniferum HOM05D003283 ORTHO05D004037 9.5e-32 140.6 112 60.7
Rhsim08G0157300 Rhododendron simsii HOM05D003283 ORTHO05D004037 9.5e-32 140.6 113 58.4
Solyc03g113000.3 Solanum lycopersicum HOM05D003283 ORTHO05D004037 9.5e-32 140.6 109 60.6
PSO063G5465 Papaver somniferum HOM05D003283 ORTHO05D004037 1.2e-31 140.2 112 59.8
PSO782G0417 Papaver somniferum HOM05D003283 ORTHO05D004037 1.2e-31 140.2 112 60.7
Migut.I00154 Erythranthe guttata HOM05D003283 ORTHO05D004037 1.6e-31 139.8 113 55.8
vmacro17558 Vaccinium macrocarpon HOM05D003283 ORTHO05D004037 1.6e-31 139.8 113 57.5
Actinidia04907 Actinidia chinensis HOM05D003283 ORTHO05D004037 2.8e-31 139.0 113 57.5
CAN.G1305.11 Capsicum annuum HOM05D003283 ORTHO05D004037 2.8e-31 139.0 109 60.6
MD14G1197500 Malus domestica HOM05D003283 ORTHO05D004037 2.8e-31 139.0 112 58.0
Aqoxy3G03338 Aquilegia oxysepala HOM05D003283 ORTHO05D004037 3.6e-31 138.7 112 58.0
Nitab4.5_0010552g0010 Nicotiana tabacum HOM05D003283 ORTHO05D004037 3.6e-31 138.7 109 59.6
FAN13G0270 Fragaria x ananassa HOM05D003283 ORTHO05D004037 4.7e-31 138.3 112 55.4
Nitab4.5_0000785g0040 Nicotiana tabacum HOM05D003283 ORTHO05D004037 4.7e-31 138.3 109 59.6
Hma1.2p1_0735F.1_g210410 Hydrangea macrophylla HOM05D003283 ORTHO05D004037 6.1e-31 137.9 113 58.4
Os02g0748100 Oryza sativa ssp. japonica HOM05D003283 ORTHO05D004037 6.1e-31 137.9 113 58.4
RcHm_v2.0_Chr7g0180931 Rosa chinensis HOM05D003283 ORTHO05D004037 6.1e-31 137.9 112 55.4
Duzib084G0529 Durio zibethinus HOM05D003283 ORTHO05D004037 8.0e-31 137.5 112 56.2
TAR629G0820 Trochodendron aralioides HOM05D003283 ORTHO05D004037 8.0e-31 137.5 112 59.8
ECA246G5347 Erigeron canadensis HOM05D003283 ORTHO05D004037 1.0e-30 137.1 113 55.8
FAN08G3069 Fragaria x ananassa HOM05D003283 ORTHO05D004037 1.4e-30 136.7 112 54.5
Gohir.D12G179200 Gossypium hirsutum HOM05D003283 ORTHO05D004037 1.4e-30 136.7 112 56.2
Gorai.008G191900 Gossypium raimondii HOM05D003283 ORTHO05D004037 1.4e-30 136.7 112 56.2
MD06G1190600 Malus domestica HOM05D003283 ORTHO05D004037 1.4e-30 136.7 113 55.8
SalBow5G0915 Salvia bowleyana HOM05D003283 ORTHO05D004037 1.4e-30 136.7 113 54.0
SalBow5G1222 Salvia bowleyana HOM05D003283 ORTHO05D004037 1.4e-30 136.7 113 54.0
Cfa018966 Carpinus fangiana HOM05D003283 ORTHO05D004037 2.3e-30 136.0 112 56.2
DCAR_002380 Daucus carota HOM05D003283 ORTHO05D004037 2.3e-30 136.0 108 57.4
Zm00001eb254910 Zea mays HOM05D003283 ORTHO05D004037 2.3e-30 136.0 114 57.0
DCAR_009634 Daucus carota HOM05D003283 ORTHO05D004037 3.0e-30 135.6 108 56.5
Gohir.A12G176200 Gossypium hirsutum HOM05D003283 ORTHO05D004037 3.0e-30 135.6 112 55.4
Prupe.5G189500 Prunus persica HOM05D003283 ORTHO05D004037 3.0e-30 135.6 112 56.2
TAR371G0980 Trochodendron aralioides HOM05D003283 ORTHO05D004037 3.0e-30 135.6 112 57.1
Manes.06G094600 Manihot esculenta HOM05D003283 ORTHO05D004037 4.0e-30 135.2 112 56.2
COL.COLO4_08427 Corchorus olitorius HOM05D003283 ORTHO05D004037 5.2e-30 134.8 112 51.8
Ciclev10018904m.g Citrus clementina HOM05D003283 ORTHO05D004037 6.8e-30 134.4 112 58.0
SGA_v2.0_scaffold56G20036 Striga asiatica HOM05D003283 ORTHO05D004037 6.8e-30 134.4 113 54.0
Thecc.03G083200 Theobroma cacao HOM05D003283 ORTHO05D004037 6.8e-30 134.4 112 57.1
THA.LOC104821426 Tarenaya hassleriana HOM05D003283 ORTHO05D004037 1.2e-29 133.7 115 53.9
TWI60G1478 Tripterygium wilfordii HOM05D003283 ORTHO05D004037 1.2e-29 133.7 113 54.0
QL10p016258 Quercus lobata HOM05D003283 ORTHO05D004037 2.0e-29 132.9 112 56.2
Atru.chr9.2283 Acer truncatum HOM05D003283 ORTHO05D004037 2.6e-29 132.5 113 52.2
CDE04G2066 Ceratophyllum demersum HOM05D003283 ORTHO05D004037 3.4e-29 132.1 112 54.5
CDE06G0848 Ceratophyllum demersum HOM05D003283 ORTHO05D004037 4.4e-29 131.7 112 56.2
CANSAT80G1070 Cannabis sativa HOM05D003283 ORTHO05D004037 5.8e-29 131.3 112 53.6
PGR044G0877 Punica granatum HOM05D003283 ORTHO05D004037 7.5e-29 131.0 112 53.6
unitig_46.g18384 Utricularia gibba HOM05D003283 ORTHO05D004037 9.8e-29 130.6 109 54.1
MSTRG.11392 Avicennia marina HOM05D003283 ORTHO05D004037 1.3e-28 130.2 113 53.1
Glyma.08G357000 Glycine max HOM05D003283 ORTHO05D004037 1.7e-28 129.8 112 56.2
Lj1g0007970 Lotus japonicus HOM05D003283 ORTHO05D004037 1.7e-28 129.8 112 57.1
AUR62014508 Chenopodium quinoa HOM05D003283 ORTHO05D004037 2.2e-28 129.4 112 52.7
ECA234G4349 Erigeron canadensis HOM05D003283 ORTHO05D004037 2.2e-28 129.4 113 53.1
Sc06g0000940 Simmondsia chinensis HOM05D003283 ORTHO05D004037 2.2e-28 129.4 113 54.0
Glyma.18G175500 Glycine max HOM05D003283 ORTHO05D004037 3.7e-28 128.6 112 55.4
Sed0015377 Sechium edule HOM05D003283 ORTHO05D004037 4.9e-28 128.3 115 51.3
TPR.G23258 Trifolium pratense HOM05D003283 ORTHO05D004037 4.9e-28 128.3 112 58.0
Ca_22682_v3 Cicer arietinum L. HOM05D003283 ORTHO05D004037 6.4e-28 127.9 112 58.0
Eucgr.K02465 Eucalyptus grandis HOM05D003283 ORTHO05D004037 8.3e-28 127.5 113 54.9
Phvul.008G122500 Phaseolus vulgaris HOM05D003283 ORTHO05D004037 8.3e-28 127.5 112 55.4
BcaB01g00886 Brassica carinata HOM05D003283 ORTHO05D004037 1.1e-27 127.1 129 49.6
Lsat_1_v5_gn_5_18780 Lactuca sativa HOM05D003283 ORTHO05D004037 1.1e-27 127.1 113 54.0
CsaV3_7G007830 Cucumis sativus L. HOM05D003283 ORTHO05D004037 1.4e-27 126.7 112 53.6
Medtr7g059230 Medicago truncatula HOM05D003283 ORTHO05D004037 1.4e-27 126.7 112 56.2
ClCG02G006810 Citrullus lanatus HOM05D003283 ORTHO05D004037 1.8e-27 126.3 112 53.6
Lalb_Chr19g0125481 Lupinus albus HOM05D003283 ORTHO05D004037 1.8e-27 126.3 112 57.1
Sabra15G0088300 Salix brachista HOM05D003283 ORTHO05D004037 1.8e-27 126.3 113 55.8
arahy.Tifrunner.gnm1.ann1.TFBQ7Q Arachis hypogaea HOM05D003283 ORTHO05D004037 2.4e-27 125.9 112 56.2
Thhalv10011079m.g Eutrema salsugineum HOM05D003283 ORTHO05D004037 2.4e-27 125.9 129 48.8
AUR62038027 Chenopodium quinoa HOM05D003283 ORTHO05D004037 4.1e-27 125.2 112 50.0
MELO3C018518.2 Cucumis melo HOM05D003283 ORTHO05D004037 4.1e-27 125.2 112 53.6
arahy.Tifrunner.gnm1.ann1.I6X9WR Arachis hypogaea HOM05D003283 ORTHO05D004037 7.0e-27 124.4 112 55.4
arahy.Tifrunner.gnm1.ann1.N5P3C8 Arachis hypogaea HOM05D003283 ORTHO05D004037 7.0e-27 124.4 112 55.4
arahy.Tifrunner.gnm1.ann1.Q5PT82 Arachis hypogaea HOM05D003283 ORTHO05D004037 7.0e-27 124.4 112 55.4
AL5G26980 Arabidopsis lyrata HOM05D003283 ORTHO05D004037 9.2e-27 124.0 129 48.8
CARHR156380 Cardamine hirsuta HOM05D003283 ORTHO05D004037 9.2e-27 124.0 115 49.6
VMungo1383G2254 Vigna mungo HOM05D003283 ORTHO05D004037 9.2e-27 124.0 112 55.4
Aa31LG4G16410 Aethionema arabicum HOM05D003283 ORTHO05D004037 1.2e-26 123.6 130 49.2
A06p19900 Brassica napus HOM05D003283 ORTHO05D004037 1.2e-26 123.6 129 48.8
BraA06t25074Z Brassica rapa HOM05D003283 ORTHO05D004037 1.6e-26 123.2 129 48.8
Psat3g142840 Pisum sativum HOM05D003283 ORTHO05D004037 1.6e-26 123.2 112 55.4
AT3G47700 Arabidopsis thaliana HOM05D003283 ORTHO05D004037 2.7e-26 122.5 114 50.9
EL10Ac1g00662 Beta vulgaris HOM05D003283 ORTHO05D004037 3.5e-26 122.1 112 50.0
Carub.0005s1383 Capsella rubella HOM05D003283 ORTHO05D004037 3.5e-26 122.1 129 47.3
Sp5g14220 Schrenkiella parvula HOM05D003283 ORTHO05D004037 3.5e-26 122.1 129 48.1
BcaC01g01781 Brassica carinata HOM05D003283 ORTHO05D004037 7.8e-26 120.9 129 47.3
C03p71930 Brassica napus HOM05D003283 ORTHO05D004037 7.8e-26 120.9 129 47.3
BolC3t19490H Brassica oleracea HOM05D003283 ORTHO05D004037 7.8e-26 120.9 129 47.3
Ah.05g177110 Amaranthus hybridus HOM05D003283 ORTHO05D004037 7.3e-24 114.4 113 46.9
Hund29099 Selenicereus undatus HOM05D003283 ORTHO05D004037 6.2e-23 111.3 114 45.6
Hund29100 Selenicereus undatus HOM05D003283 ORTHO05D004037 6.2e-23 111.3 114 45.6
FAN04G0644 Fragaria x ananassa HOM05D003283 ORTHO05D004037 1.4e-22 110.2 94 52.1
ATR0564G097 Amborella trichopoda HOM05D003283 ORTHO05D004037 2.3e-22 109.4 114 46.5
SHI07681 Sapria himalayana HOM05D003283 ORTHO05D004037 2.6e-21 105.9 113 45.1
SEGI_31827 Sequoiadendron giganteum HOM05D003283 ORTHO05D004037 1.4e-19 100.1 134 39.6
SMO364G0731 Selaginella moellendorffii HOM05D003283 ORTHO05D004037 6.2e-15 84.7 116 33.6
ATR1096G042 Amborella trichopoda HOM05D003283 ORTHO05D004037 4.0e-14 82.0 118 38.1
MBI13_g10955_MAGBIO Magnolia biondii HOM05D003283 ORTHO05D004037 2.6e-13 79.3 118 32.2
Aqoxy3G03815 Aquilegia oxysepala HOM05D003283 ORTHO05D004037 7.5e-13 77.8 120 33.3
CSS0016081 Camellia sinensis var. sinensis HOM05D003283 ORTHO05D004037 9.9e-13 77.4 47 68.1
Mapoly0035s0069 Marchantia polymorpha HOM05D003283 ORTHO05D004037 3.7e-12 75.5 141 29.1
AagrBONN_evm.TU.Sc2ySwM_117.2851 Anthoceros agrestis HOM05D003283 ORTHO05D004037 7.1e-11 71.2 133 27.8
Atru.chr3.2943_Atru.chr3.2944 Acer truncatum HOM05D003283 ORTHO05D004037 9.2e-11 70.9 121 27.3
AUR62000246 Chenopodium quinoa HOM05D003283 ORTHO05D004037 2.1e-10 69.7 112 29.5
AUR62006591 Chenopodium quinoa HOM05D003283 ORTHO05D004037 2.7e-10 69.3 112 29.5
QL01p020539 Quercus lobata HOM05D003283 ORTHO05D004037 3.5e-10 68.9 119 31.1
CANSAT21G0681 Cannabis sativa HOM05D003283 ORTHO05D004037 3.0e-09 65.9 102 35.3
CANSAT21G2413 Cannabis sativa HOM05D003283 ORTHO05D004037 3.0e-09 65.9 102 35.3
THA.LOC104800476 Tarenaya hassleriana HOM05D003283 ORTHO05D004037 3.9e-09 65.5 113 30.1
Manes.01G175300 Manihot esculenta HOM05D003283 ORTHO05D004037 8.6e-09 64.3 121 27.3
Actinidia24492 Actinidia chinensis HOM05D003283 ORTHO05D004037 1.1e-08 63.9 123 29.3
EL10Ac4g10051 Beta vulgaris HOM05D003283 ORTHO05D004037 1.9e-08 63.2 112 26.8
Nn2g14585 Nelumbo nucifera HOM05D003283 ORTHO05D004037 1.9e-08 63.2 121 29.8
TAR636G0110 Trochodendron aralioides HOM05D003283 ORTHO05D004037 1.9e-08 63.2 119 26.9
Lj6g0003806 Lotus japonicus HOM05D003283 ORTHO05D004037 2.5e-08 62.8 121 25.6
GSVIVG01008515001 Vitis vinifera HOM05D001045 ORTHO05D004836 2.5e-08 62.8 122 27.9
Haze_23536 Corylus avellana HOM05D003283 ORTHO05D004037 3.3e-08 62.4 121 28.9
Dinv02248 Davidia involucrata HOM05D003283 ORTHO05D004037 3.3e-08 62.4 115 27.0
TAR636G1728 Trochodendron aralioides HOM05D000238 ORTHO05D001889 4.3e-08 62.0 51 52.9
Ah.04g159470 Amaranthus hybridus HOM05D003283 ORTHO05D004037 5.6e-08 61.6 112 26.8
Lj2A831G19 Lonicera japonica HOM05D003283 ORTHO05D004037 7.3e-08 61.2 121 24.0
Lalb_Chr18g0049151 Lupinus albus HOM05D003283 ORTHO05D004037 7.3e-08 61.2 123 26.8
Medtr3g040540 Medicago truncatula HOM05D003283 ORTHO05D004037 7.3e-08 61.2 121 26.4
CARHR008280 Cardamine hirsuta HOM05D003283 ORTHO05D004037 9.5e-08 60.8 106 32.1
Cfa010148 Carpinus fangiana HOM05D003283 ORTHO05D004037 9.5e-08 60.8 121 28.9
Ca_04721_v3 Cicer arietinum L. HOM05D003283 ORTHO05D004037 2.1e-07 59.7 121 26.4
CiPaw.13G145100 Carya illinoinensis HOM05D003283 ORTHO05D004037 3.6e-07 58.9 117 27.4
A06p05420 Brassica napus HOM05D003283 ORTHO05D004037 4.7e-07 58.5 99 31.3
BraA06t23751Z Brassica rapa HOM05D003283 ORTHO05D004037 4.7e-07 58.5 99 31.3
Hund21947 Selenicereus undatus HOM05D003283 ORTHO05D004037 8.1e-07 57.8 116 29.3
AL1G18810 Arabidopsis lyrata HOM05D003283 ORTHO05D004037 1.1e-06 57.4 129 31.8
TWI79G1200 Tripterygium wilfordii HOM05D003283 ORTHO05D004037 2.4e-06 56.2 121 28.9
vmacro04088 Vaccinium macrocarpon HOM05D003283 ORTHO05D004037 3.1e-06 55.8 123 29.3
AT1G08400 Arabidopsis thaliana HOM05D003283 ORTHO05D004037 4.0e-06 55.5 129 31.0
Glyma.13G073500 Glycine max HOM05D003283 ORTHO05D004037 4.0e-06 55.5 116 25.9
BcaB07g34088 Brassica carinata HOM05D003283 ORTHO05D004037 6.8e-06 54.7 104 32.7
C05p06540 Brassica napus HOM05D003283 ORTHO05D004037 6.8e-06 54.7 104 32.7
BolC5t29414H Brassica oleracea HOM05D003283 ORTHO05D004037 6.8e-06 54.7 104 32.7
Thhalv10006826m.g Eutrema salsugineum HOM05D003283 ORTHO05D004037 6.8e-06 54.7 107 29.9
Carub.0001s0775 Capsella rubella HOM05D003283 ORTHO05D004037 8.9e-06 54.3 129 30.2
Duzib205G0399 Durio zibethinus HOM05D003283 ORTHO05D004037 8.9e-06 54.3 114 28.9
Rhsim13G0203500 Rhododendron simsii HOM05D003283 ORTHO05D004037 8.9e-06 54.3 122 27.0
Sabra09G0011700 Salix brachista HOM05D003283 ORTHO05D004037 8.9e-06 54.3 117 23.1


User provided reference genes

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