Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_013441 Vanilla planifolia HOM05D007027 ORTHO05D008765 1.4e-110 402.9 194 100.0
Gohir.A01G183800 Gossypium hirsutum HOM05D007027 ORTHO05D008765 1.1e-83 313.5 183 79.2
MBI03_g18680_MAGBIO Magnolia biondii HOM05D007027 ORTHO05D008765 1.9e-83 312.8 186 81.2
Gohir.D01G174800 Gossypium hirsutum HOM05D007027 ORTHO05D008765 2.7e-82 308.9 184 78.8
Gorai.002G216900 Gossypium raimondii HOM05D007027 ORTHO05D008765 2.7e-82 308.9 184 78.8
Dinv07482 Davidia involucrata HOM05D007027 ORTHO05D008765 1.4e-81 306.6 186 77.4
Nn5g27423 Nelumbo nucifera HOM05D007027 ORTHO05D008765 1.4e-81 306.6 184 78.3
Duzib132G0056 Durio zibethinus HOM05D007027 ORTHO05D008765 3.0e-81 305.4 184 78.8
THA.LOC104816809 Tarenaya hassleriana HOM05D007027 ORTHO05D008765 3.0e-81 305.4 185 77.3
GSVIVG01023249001 Vitis vinifera HOM05D007027 ORTHO05D008765 3.0e-81 305.4 186 77.4
Thecc.02G018500 Theobroma cacao HOM05D007027 ORTHO05D008765 6.7e-81 304.3 184 77.7
Manes.07G024000 Manihot esculenta HOM05D007027 ORTHO05D008765 1.1e-80 303.5 186 78.5
Actinidia00176 Actinidia chinensis HOM05D007027 ORTHO05D008765 2.0e-80 302.8 185 76.8
Cfa004487 Carpinus fangiana HOM05D007027 ORTHO05D008765 2.0e-80 302.8 183 77.6
CSS0028981 Camellia sinensis var. sinensis HOM05D007027 ORTHO05D008765 2.6e-80 302.4 185 77.3
CiPaw.05G004800 Carya illinoinensis HOM05D007027 ORTHO05D008765 2.6e-80 302.4 177 78.5
PGR142G1179 Punica granatum HOM05D007027 ORTHO05D008765 9.7e-80 300.4 184 75.5
ATR1136G089 Amborella trichopoda HOM05D007027 ORTHO05D008765 2.8e-79 298.9 185 76.8
Eucgr.I02764 Eucalyptus grandis HOM05D007027 ORTHO05D008765 2.8e-79 298.9 186 75.3
CiPaw.06G173600 Carya illinoinensis HOM05D007027 ORTHO05D008765 6.3e-79 297.7 177 77.4
FvH4_3g33250 Fragaria vesca HOM05D007027 ORTHO05D008765 8.2e-79 297.4 187 74.3
FAN11G0675 Fragaria x ananassa HOM05D007027 ORTHO05D008765 8.2e-79 297.4 187 74.3
Ciclev10001491m.g Citrus clementina HOM05D007027 ORTHO05D008765 1.1e-78 297.0 187 74.9
CAN.G855.3 Capsicum annuum HOM05D007027 ORTHO05D008765 1.8e-78 296.2 186 74.2
RcHm_v2.0_Chr5g0060601 Rosa chinensis HOM05D007027 ORTHO05D008765 1.8e-78 296.2 187 74.9
TAR381G1092 Trochodendron aralioides HOM05D007027 ORTHO05D008765 2.4e-78 295.8 185 75.7
FAN25G1584 Fragaria x ananassa HOM05D007027 ORTHO05D008765 4.1e-78 295.0 187 73.8
Solyc01g103560.3 Solanum lycopersicum HOM05D007027 ORTHO05D008765 4.1e-78 295.0 186 73.7
Cc02_g23170 Coffea canephora HOM05D007027 ORTHO05D008765 5.3e-78 294.7 190 74.2
MD08G1241400 Malus domestica HOM05D007027 ORTHO05D008765 5.3e-78 294.7 187 73.8
PGSC0003DMG400024892 Solanum tuberosum HOM05D007027 ORTHO05D008765 5.3e-78 294.7 186 73.7
Aqoxy3G00475 Aquilegia oxysepala HOM05D007027 ORTHO05D008765 1.6e-77 293.1 182 77.5
BcaC05g24848 Brassica carinata HOM05D007027 ORTHO05D008765 1.6e-77 293.1 191 70.7
CsaV3_5G029790 Cucumis sativus L. HOM05D007027 ORTHO05D008765 1.6e-77 293.1 187 73.8
QL02p100436 Quercus lobata HOM05D007027 ORTHO05D008765 1.6e-77 293.1 180 75.6
BraA06t23859Z Brassica rapa HOM05D007027 ORTHO05D008765 2.6e-77 292.4 181 73.5
Atru.chr6.497 Acer truncatum HOM05D007027 ORTHO05D008765 3.5e-77 292.0 187 73.8
Cpa.g.sc113.45 Carica papaya HOM05D007027 ORTHO05D008765 3.5e-77 292.0 185 75.1
MD15G1435400 Malus domestica HOM05D007027 ORTHO05D008765 3.5e-77 292.0 187 73.3
A06p06480 Brassica napus HOM05D007027 ORTHO05D008765 4.5e-77 291.6 181 72.9
Sopen01g045910 Solanum pennellii HOM05D007027 ORTHO05D008765 5.9e-77 291.2 185 73.0
Sed0027668 Sechium edule HOM05D007027 ORTHO05D008765 7.7e-77 290.8 176 76.1
FAN16G3401 Fragaria x ananassa HOM05D007027 ORTHO05D008765 1.7e-76 289.7 186 73.1
Os12g0194800 Oryza sativa ssp. japonica HOM05D007027 ORTHO05D008765 2.2e-76 289.3 181 75.7
SalBow7G1849 Salvia bowleyana HOM05D007027 ORTHO05D008765 2.2e-76 289.3 185 74.1
Oeu064602.3 Olea europaea HOM05D007027 ORTHO05D008765 2.9e-76 288.9 185 73.5
C05p07890 Brassica napus HOM05D007027 ORTHO05D008765 3.8e-76 288.5 181 72.4
BolC5t29540H Brassica oleracea HOM05D007027 ORTHO05D008765 3.8e-76 288.5 181 72.4
Rhsim11G0122600 Rhododendron simsii HOM05D007027 ORTHO05D008765 3.8e-76 288.5 215 67.0
Lalb_Chr20g0123691 Lupinus albus HOM05D007027 ORTHO05D008765 5.0e-76 288.1 187 69.5
Medtr2g005830 Medicago truncatula HOM05D007027 ORTHO05D008765 1.1e-75 287.0 178 75.3
Ca_00043_v3 Cicer arietinum L. HOM05D007027 ORTHO05D008765 2.5e-75 285.8 187 71.7
Lj5C266T4 Lonicera japonica HOM05D007027 ORTHO05D008765 1.6e-74 283.1 183 72.7
Nitab4.5_0000787g0210 Nicotiana tabacum HOM05D007027 ORTHO05D008765 1.6e-74 283.1 186 72.6
Psat1g222360 Pisum sativum HOM05D007027 ORTHO05D008765 2.1e-74 282.7 191 70.7
SGA_v2.0_scaffold304G47919 Striga asiatica HOM05D007027 ORTHO05D008765 2.1e-74 282.7 182 71.4
Migut.B00775 Erythranthe guttata HOM05D007027 ORTHO05D008765 2.7e-74 282.3 185 69.7
Nitab4.5_0004106g0030 Nicotiana tabacum HOM05D007027 ORTHO05D008765 3.6e-74 282.0 186 72.0
Zm00001eb138750 Zea mays HOM05D007027 ORTHO05D008765 3.6e-74 282.0 188 72.3
Glyma.12G167000 Glycine max HOM05D007027 ORTHO05D008765 4.7e-74 281.6 189 72.0
Thhalv10007981m.g Eutrema salsugineum HOM05D007027 ORTHO05D008765 6.1e-74 281.2 190 68.4
Glyma.16G003100 Glycine max HOM05D007027 ORTHO05D008765 6.1e-74 281.2 191 71.2
CANSAT54G3047 Cannabis sativa HOM05D007027 ORTHO05D008765 8.0e-74 280.8 189 70.4
MELO3C011820.2 Cucumis melo HOM05D007027 ORTHO05D008765 1.0e-73 280.4 204 67.6
Sp1g08410 Schrenkiella parvula HOM05D007027 ORTHO05D008765 1.0e-73 280.4 193 67.4
TPR.G2122 Trifolium pratense HOM05D007027 ORTHO05D008765 1.8e-73 279.6 187 70.1
C08p49260 Brassica napus HOM05D007027 ORTHO05D008765 2.3e-73 279.3 180 70.6
BolC8t52461H Brassica oleracea HOM05D007027 ORTHO05D008765 2.3e-73 279.3 180 70.6
Carub.0001s0916 Capsella rubella HOM05D007027 ORTHO05D008765 2.3e-73 279.3 180 71.7
CARHR009790 Cardamine hirsuta HOM05D007027 ORTHO05D008765 2.3e-73 279.3 192 67.7
HanXRQChr09g0249131 Helianthus annuus HOM05D007027 ORTHO05D008765 2.3e-73 279.3 187 71.7
AT1G09800 Arabidopsis thaliana HOM05D007027 ORTHO05D008765 3.0e-73 278.9 180 72.2
Phvul.006G218900 Phaseolus vulgaris HOM05D007027 ORTHO05D008765 5.2e-73 278.1 185 71.9
Potri.003G008500 Populus trichocarpa HOM05D007027 ORTHO05D008765 8.8e-73 277.3 176 75.6
AL1G20380 Arabidopsis lyrata HOM05D007027 ORTHO05D008765 1.1e-72 276.9 180 71.1
arahy.Tifrunner.gnm1.ann1.BAUB6M Arachis hypogaea HOM05D007027 ORTHO05D008765 1.5e-72 276.6 177 72.3
Hund15459 Selenicereus undatus HOM05D007027 ORTHO05D008765 1.5e-72 276.6 186 69.4
A09p65310 Brassica napus HOM05D007027 ORTHO05D008765 2.6e-72 275.8 180 70.6
arahy.Tifrunner.gnm1.ann1.3G44QY Arachis hypogaea HOM05D007027 ORTHO05D008765 3.3e-72 275.4 177 72.3
DCAR_006671 Daucus carota HOM05D007027 ORTHO05D008765 3.3e-72 275.4 185 69.2
Sabra03G0004200 Salix brachista HOM05D007027 ORTHO05D008765 5.7e-72 274.6 198 67.7
ECA233G3768 Erigeron canadensis HOM05D007027 ORTHO05D008765 9.7e-72 273.9 178 71.9
VMungo0540G1081 Vigna mungo HOM05D007027 ORTHO05D008765 1.3e-71 273.5 189 70.4
EL10Ac6g14111 Beta vulgaris HOM05D007027 ORTHO05D008765 2.2e-71 272.7 176 72.7
unitig_699.g19848 Utricularia gibba HOM05D007027 ORTHO05D008765 2.2e-71 272.7 175 72.0
HPP92_013442 Vanilla planifolia HOM05D007027 ORTHO05D008765 1.1e-70 270.4 162 82.1
Haze_10044 Corylus avellana HOM05D007027 ORTHO05D008765 1.3e-68 263.5 285 49.8
PSO017G0894 Papaver somniferum HOM05D007027 ORTHO05D008765 3.8e-68 261.9 189 65.1
PSO170G1275 Papaver somniferum HOM05D007027 ORTHO05D008765 5.0e-68 261.5 189 64.6
COL.COLO4_17723 Corchorus olitorius HOM05D007027 ORTHO05D008765 3.2e-67 258.8 162 75.9
Aa31LG1G5150 Aethionema arabicum HOM05D007027 ORTHO05D008765 4.2e-67 258.5 175 69.1
TWI23G0132 Tripterygium wilfordii HOM05D007027 ORTHO05D008765 1.4e-65 253.4 172 70.3
Prupe.1G579000 Prunus persica HOM05D007027 ORTHO05D008765 4.0e-65 251.9 184 66.3
vmacro01711 Vaccinium macrocarpon HOM05D007027 ORTHO05D008765 5.2e-65 251.5 199 61.3
FAN21G1550 Fragaria x ananassa HOM05D007027 ORTHO05D008765 4.4e-64 248.4 166 70.5
Lj6g0019688 Lotus japonicus HOM05D007027 ORTHO05D008765 2.2e-63 246.1 187 63.6
Lj6g0023928 Lotus japonicus HOM05D007027 ORTHO05D008765 2.2e-63 246.1 187 63.6
Sc07g0005100 Simmondsia chinensis HOM05D007027 ORTHO05D008765 7.0e-62 241.1 176 66.5
BcaC07g41859 Brassica carinata HOM05D007027 ORTHO05D008765 2.7e-61 239.2 186 61.8
Mapoly0016s0042 Marchantia polymorpha HOM05D007027 ORTHO05D008765 4.5e-61 238.4 189 61.4
CBR_g30061 Chara braunii HOM05D007027 ORTHO05D008765 1.3e-60 236.9 184 60.9
Pp3c1_13020 Physcomitrium patens HOM05D007027 ORTHO05D008765 3.8e-60 235.3 179 62.6
CDE05G2927 Ceratophyllum demersum HOM05D007027 ORTHO05D008765 1.5e-59 233.4 138 79.0
SMO118G0354 Selaginella moellendorffii HOM05D007027 ORTHO05D008765 4.7e-58 228.4 177 59.9
AUR62043952 Chenopodium quinoa HOM05D007027 ORTHO05D008765 1.8e-54 216.5 176 62.5
ClCG11G013270 Citrullus lanatus HOM05D007027 ORTHO05D008765 1.9e-51 206.5 166 63.3
Lsat_1_v5_gn_9_120240 Lactuca sativa HOM05D007027 ORTHO05D008765 2.3e-49 199.5 133 72.9
Migut.B00774 Erythranthe guttata HOM05D007027 ORTHO05D008765 9.2e-38 161.0 103 70.9
MCO02G420 Micromonas commoda HOM05D007027 ORTHO05D008765 2.0e-37 159.8 221 41.6
RcHm_v2.0_Chr3g0481081 Rosa chinensis HOM05D007027 ORTHO05D008765 2.1e-26 123.2 77 76.6
SMO361G0559 Selaginella moellendorffii HOM05D006708 ORTHO05D008321 2.1e-18 96.7 177 34.5
Mapoly0209s0002 Marchantia polymorpha HOM05D006708 ORTHO05D008321 1.3e-15 87.4 178 30.3
AUR62028254 Chenopodium quinoa HOM05D007027 ORTHO05D008765 2.2e-15 86.7 54 66.7
Pp3c21_5420 Physcomitrium patens HOM05D006708 ORTHO05D008321 3.8e-15 85.9 178 30.9
HanXRQChr10g0293331 Helianthus annuus HOM05D006708 ORTHO05D008321 4.9e-15 85.5 181 34.3
Lj4g0015836 Lotus japonicus HOM05D006708 ORTHO05D008321 3.5e-13 79.3 174 32.8
VMungo1215G1693 Vigna mungo HOM05D006708 ORTHO05D008321 4.6e-13 79.0 171 33.3
Rhsim12G0000100 Rhododendron simsii HOM05D006708 ORTHO05D007921 6.0e-13 78.6 174 31.0
Haze_12609 Corylus avellana HOM05D006708 ORTHO05D008321 1.3e-12 77.4 174 32.8
Haze_12620 Corylus avellana HOM05D006708 ORTHO05D008321 1.3e-12 77.4 174 32.8
Lsat_1_v5_gn_1_39980 Lactuca sativa HOM05D006708 ORTHO05D008321 1.3e-12 77.4 171 32.2
Hma1.2p1_0013F.1_g007850 Hydrangea macrophylla HOM05D006708 ORTHO05D008321 1.7e-12 77.0 176 31.2
CsaV3_6G000260 Cucumis sativus L. HOM05D006708 ORTHO05D008321 2.3e-12 76.6 181 32.0
HPP92_001944 Vanilla planifolia HOM05D006708 ORTHO05D008321 2.3e-12 76.6 174 31.0
FAN12G1816 Fragaria x ananassa HOM05D006708 ORTHO05D008321 3.0e-12 76.3 178 29.2
AT3G06950 Arabidopsis thaliana HOM05D006708 ORTHO05D008321 3.9e-12 75.9 176 30.1
Carub.0003s0647 Capsella rubella HOM05D006708 ORTHO05D008321 3.9e-12 75.9 174 31.0
Nn3g21927 Nelumbo nucifera HOM05D006708 ORTHO05D008321 5.1e-12 75.5 174 31.0
SalBow2G2621 Salvia bowleyana HOM05D006708 ORTHO05D008321 5.1e-12 75.5 177 30.5
AagrBONN_evm.TU.Sc2ySwM_228.1603 Anthoceros agrestis HOM05D006708 ORTHO05D008321 6.6e-12 75.1 174 29.9
RcHm_v2.0_Chr4g0427681 Rosa chinensis HOM05D006708 ORTHO05D008321 6.6e-12 75.1 178 29.8
AL3G18120 Arabidopsis lyrata HOM05D006708 ORTHO05D008321 8.7e-12 74.7 176 30.1
FvH4_4g21570 Fragaria vesca HOM05D006708 ORTHO05D008321 8.7e-12 74.7 178 29.2
Manes.03G212000 Manihot esculenta HOM05D006708 ORTHO05D008321 8.7e-12 74.7 196 29.1
CiPaw.01G128700 Carya illinoinensis HOM05D006708 ORTHO05D008321 1.1e-11 74.3 176 30.7
Ca_21374_v3 Cicer arietinum L. HOM05D006708 ORTHO05D008321 1.1e-11 74.3 171 31.0
Dinv29501 Davidia involucrata HOM05D006708 ORTHO05D008321 1.1e-11 74.3 174 30.5
FAN17G2628 Fragaria x ananassa HOM05D006708 ORTHO05D008321 1.1e-11 74.3 178 29.2
FAN07G1828 Fragaria x ananassa HOM05D006708 ORTHO05D008321 1.5e-11 73.9 176 29.0
Glyma.17G041000 Glycine max HOM05D006708 ORTHO05D008321 1.5e-11 73.9 174 31.6
CBR_g55386 Chara braunii HOM05D006708 ORTHO05D008321 1.9e-11 73.6 182 32.4
Gorai.005G073000 Gossypium raimondii HOM05D006708 ORTHO05D008321 1.9e-11 73.6 192 27.6
COL.COLO4_34511 Corchorus olitorius HOM05D006708 ORTHO05D008321 2.5e-11 73.2 176 29.5
Gohir.A02G058800 Gossypium hirsutum HOM05D006708 ORTHO05D008321 2.5e-11 73.2 192 27.1
Prupe.1G104700 Prunus persica HOM05D006708 ORTHO05D008321 2.5e-11 73.2 176 29.5
Hund22645 Selenicereus undatus HOM05D006708 ORTHO05D008321 2.5e-11 73.2 187 29.4
Actinidia02537 Actinidia chinensis HOM05D006708 ORTHO05D008321 3.3e-11 72.8 174 30.5
arahy.Tifrunner.gnm1.ann1.H7T0W5 Arachis hypogaea HOM05D006708 ORTHO05D008321 3.3e-11 72.8 174 31.0
arahy.Tifrunner.gnm1.ann1.YU479Z Arachis hypogaea HOM05D006708 ORTHO05D008321 3.3e-11 72.8 174 31.0
QL06p014362 Quercus lobata HOM05D006708 ORTHO05D008321 3.3e-11 72.8 176 30.1
Sabra08G0153200 Salix brachista HOM05D006708 ORTHO05D008321 3.3e-11 72.8 174 30.5
Potri.008G206200 Populus trichocarpa HOM05D006708 ORTHO05D008321 4.3e-11 72.4 174 30.5
MD13G1140300 Malus domestica HOM05D006708 ORTHO05D008321 5.6e-11 72.0 176 29.5
Ciclev10005313m.g Citrus clementina HOM05D006708 ORTHO05D008321 7.3e-11 71.6 179 29.6
Migut.A01089 Erythranthe guttata HOM05D006708 ORTHO05D008321 9.6e-11 71.2 177 30.5
Glyma.13G119200 Glycine max HOM05D006708 ORTHO05D008321 9.6e-11 71.2 174 30.5
TAR365G0272 Trochodendron aralioides HOM05D006708 ORTHO05D008321 9.6e-11 71.2 176 30.7
AUR62002543 Chenopodium quinoa HOM05D006708 ORTHO05D008321 1.3e-10 70.9 174 31.0
Thecc.04G313500 Theobroma cacao HOM05D006708 ORTHO05D008321 2.1e-10 70.1 176 29.5
Lalb_Chr18g0047341 Lupinus albus HOM05D006708 ORTHO05D008321 2.8e-10 69.7 176 30.7
Cre13.g591501 Chlamydomonas reinhardtii HOM05D006708 ORTHO05D008321 3.6e-10 69.3 179 29.6
Duzib151G0010 Durio zibethinus HOM05D006708 ORTHO05D008321 4.8e-10 68.9 176 27.8
CANSAT64G0974 Cannabis sativa HOM05D006708 ORTHO05D008321 6.2e-10 68.6 173 30.1
ClCG06G004170 Citrullus lanatus HOM05D006708 ORTHO05D008321 1.1e-09 67.8 187 28.9
Gohir.D02G064500 Gossypium hirsutum HOM05D006708 ORTHO05D008321 1.4e-09 67.4 192 26.6
PRCOL_00002295 Prasinoderma coloniale HOM05D006708 ORTHO05D008321 4.5e-08 62.4 149 30.2
MD16G1135500 Malus domestica HOM05D006708 ORTHO05D008321 4.9e-07 58.9 176 28.4
Peaxi162Scf00011g01224 Petunia axillaris HOM05D007027 ORTHO05D008765 1.4e-06 57.4 43 58.1
SGA_v2.0_scaffold318G48475 Striga asiatica HOM05D006401 ORTHO05D007864 2.4e-06 56.6 135 31.1
SEGI_32206 Sequoiadendron giganteum HOM05D006708 ORTHO05D008321 5.4e-06 55.5 73 37.0
Carub.0007s3123 Capsella rubella HOM05D006401 ORTHO05D007864 7.1e-06 55.1 145 29.7


User provided reference genes

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