Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_007973 Vanilla planifolia HOM05D000822 ORTHO05D004949 4.4e-186 654.4 321 100.0
MBI01_g15672_MAGBIO Magnolia biondii HOM05D000822 ORTHO05D004949 9.7e-93 344.4 318 54.4
TAR645G0002 Trochodendron aralioides HOM05D000822 ORTHO05D004949 8.0e-87 324.7 309 51.5
Nn2g12036 Nelumbo nucifera HOM05D000822 ORTHO05D004949 4.4e-85 318.9 316 49.4
TAR383G0596 Trochodendron aralioides HOM05D000822 ORTHO05D004949 4.4e-85 318.9 314 51.9
Aa31LG4G18010 Aethionema arabicum HOM05D000822 ORTHO05D004949 8.2e-84 314.7 299 53.8
CDE04G0917 Ceratophyllum demersum HOM05D000822 ORTHO05D004949 1.1e-83 314.3 303 53.8
Aqoxy7G03700 Aquilegia oxysepala HOM05D000822 ORTHO05D004949 7.0e-83 311.6 319 50.2
Sabra18G0030300 Salix brachista HOM05D000822 ORTHO05D004949 1.1e-80 304.3 299 51.5
Potri.006G253500 Populus trichocarpa HOM05D000822 ORTHO05D004949 1.5e-80 303.9 314 50.3
Zm00001eb132680 Zea mays HOM05D000822 ORTHO05D004949 2.5e-80 303.1 316 50.0
Sabra06G0198000 Salix brachista HOM05D000822 ORTHO05D004949 4.2e-80 302.4 306 50.7
MELO3C011257.2 Cucumis melo HOM05D000315 ORTHO05D004949 5.5e-80 302.0 303 49.5
Rhsim02G0199900 Rhododendron simsii HOM05D000822 ORTHO05D004949 7.2e-80 301.6 312 48.4
ClCG08G013320 Citrullus lanatus HOM05D000822 ORTHO05D004949 3.6e-79 299.3 304 49.3
Potri.018G028100 Populus trichocarpa HOM05D000822 ORTHO05D004949 3.6e-79 299.3 312 50.3
Cfa013155 Carpinus fangiana HOM05D000822 ORTHO05D004949 4.7e-79 298.9 302 50.0
vmacro11165 Vaccinium macrocarpon HOM05D000822 ORTHO05D004949 4.7e-79 298.9 305 48.2
A01p24710 Brassica napus HOM05D000822 ORTHO05D004949 8.0e-79 298.1 312 48.1
BraA01t02383Z Brassica rapa HOM05D000822 ORTHO05D004949 8.0e-79 298.1 312 48.1
Lj8A715T56 Lonicera japonica HOM05D000822 ORTHO05D004949 1.0e-78 297.7 309 50.2
BcaC09g49954 Brassica carinata HOM05D000822 ORTHO05D004949 2.3e-78 296.6 312 47.8
C01p30830 Brassica napus HOM05D000822 ORTHO05D004949 2.3e-78 296.6 312 47.8
BolC1t03015H Brassica oleracea HOM05D000822 ORTHO05D004949 2.3e-78 296.6 312 47.8
CsaV3_2G032040 Cucumis sativus L. HOM05D000822 ORTHO05D004949 3.0e-78 296.2 302 49.0
QL02p021874 Quercus lobata HOM05D000822 ORTHO05D004949 6.8e-78 295.0 314 48.7
BcaB05g23125 Brassica carinata HOM05D000822 ORTHO05D004949 8.8e-78 294.7 312 47.8
Rhsim03G0035600 Rhododendron simsii HOM05D000822 ORTHO05D004949 8.8e-78 294.7 306 47.7
CSS0023602 Camellia sinensis var. sinensis HOM05D000822 ORTHO05D004949 1.5e-77 293.9 300 48.0
Lj7A721T54 Lonicera japonica HOM05D000822 ORTHO05D004949 1.5e-77 293.9 322 46.9
Haze_21526 Corylus avellana HOM05D000822 ORTHO05D004949 2.6e-77 293.1 302 49.3
PSO455G0184 Papaver somniferum HOM05D000822 ORTHO05D004949 3.4e-77 292.7 312 46.8
Lj8A695T68 Lonicera japonica HOM05D000822 ORTHO05D004949 4.4e-77 292.4 309 49.5
Thhalv10010107m.g Eutrema salsugineum HOM05D000822 ORTHO05D004949 5.7e-77 292.0 312 48.4
vmacro11160 Vaccinium macrocarpon HOM05D000822 ORTHO05D004949 5.7e-77 292.0 309 46.6
vmacro14477 Vaccinium macrocarpon HOM05D000822 ORTHO05D004949 5.7e-77 292.0 304 48.0
AL5G29290 Arabidopsis lyrata HOM05D000822 ORTHO05D004949 7.5e-77 291.6 312 47.1
CARHR158500 Cardamine hirsuta HOM05D000822 ORTHO05D004949 9.7e-77 291.2 314 46.8
Ah.16g104370 Amaranthus hybridus HOM05D000822 ORTHO05D004949 1.7e-76 290.4 307 46.6
Sp5g12590 Schrenkiella parvula HOM05D000822 ORTHO05D004949 2.2e-76 290.0 312 47.8
Thecc.09G026000 Theobroma cacao HOM05D000822 ORTHO05D004949 2.8e-76 289.7 299 48.5
CiPaw.07G222400 Carya illinoinensis HOM05D000822 ORTHO05D004949 3.7e-76 289.3 301 50.8
AUR62031504 Chenopodium quinoa HOM05D000822 ORTHO05D004949 3.7e-76 289.3 304 48.0
Duzib168G0655 Durio zibethinus HOM05D000822 ORTHO05D004949 4.8e-76 288.9 299 49.5
PGR044G1864 Punica granatum HOM05D000822 ORTHO05D004949 4.8e-76 288.9 301 49.8
DCAR_003090 Daucus carota HOM05D000822 ORTHO05D004949 6.3e-76 288.5 300 49.7
THA.LOC104807527 Tarenaya hassleriana HOM05D000822 ORTHO05D004949 6.3e-76 288.5 312 47.8
BcaC02g09911 Brassica carinata HOM05D000822 ORTHO05D004949 8.3e-76 288.1 312 46.8
C04p35280 Brassica napus HOM05D000822 ORTHO05D004949 8.3e-76 288.1 312 46.8
BolC4t25082H Brassica oleracea HOM05D000822 ORTHO05D004949 8.3e-76 288.1 312 46.8
CSS0022636 Camellia sinensis var. sinensis HOM05D000822 ORTHO05D004949 8.3e-76 288.1 322 46.3
Nitab4.5_0005011g0040 Nicotiana tabacum HOM05D000822 ORTHO05D004949 3.1e-75 286.2 312 48.7
Os01g0527600 Oryza sativa ssp. japonica HOM05D000822 ORTHO05D004949 4.1e-75 285.8 311 45.7
Carub.0005s1583 Capsella rubella HOM05D000822 ORTHO05D004949 5.3e-75 285.4 297 48.1
Eucgr.C02780 Eucalyptus grandis HOM05D000822 ORTHO05D004949 7.0e-75 285.0 319 46.4
THA.LOC104807524 Tarenaya hassleriana HOM05D000822 ORTHO05D004949 1.2e-74 284.3 312 47.8
AT3G49500 Arabidopsis thaliana HOM05D000822 ORTHO05D004949 1.6e-74 283.9 312 46.8
Sed0009705 Sechium edule HOM05D000822 ORTHO05D004949 2.0e-74 283.5 304 47.0
Sc23g0006810 Simmondsia chinensis HOM05D000822 ORTHO05D004949 2.0e-74 283.5 300 50.0
Sc23g0006820 Simmondsia chinensis HOM05D000822 ORTHO05D004949 2.7e-74 283.1 307 49.8
RcHm_v2.0_Chr4g0412141 Rosa chinensis HOM05D000822 ORTHO05D004949 5.9e-74 282.0 307 48.2
Prupe.1G480300 Prunus persica HOM05D000822 ORTHO05D004949 7.7e-74 281.6 299 48.2
AUR62012402 Chenopodium quinoa HOM05D000822 ORTHO05D004949 1.0e-73 281.2 304 47.0
Gorai.009G057700 Gossypium raimondii HOM05D000822 ORTHO05D004949 1.3e-73 280.8 299 47.5
Lj1g0024027 Lotus japonicus HOM05D000822 ORTHO05D004949 2.2e-73 280.0 299 48.8
Manes.16G121400 Manihot esculenta HOM05D000822 ORTHO05D004949 3.8e-73 279.3 301 49.2
Phvul.009G093700 Phaseolus vulgaris HOM05D000822 ORTHO05D004949 3.8e-73 279.3 307 46.3
Glyma.06G068900 Glycine max HOM05D000822 ORTHO05D004949 5.0e-73 278.9 299 47.8
MD15G1124800 Malus domestica HOM05D000822 ORTHO05D004949 5.0e-73 278.9 304 47.4
Peaxi162Scf00073g01420 Petunia axillaris HOM05D000822 ORTHO05D004949 8.5e-73 278.1 312 46.2
EL10Ac2g04235 Beta vulgaris HOM05D000822 ORTHO05D004949 1.5e-72 277.3 308 46.1
Glyma.04G067300 Glycine max HOM05D000822 ORTHO05D004949 1.9e-72 276.9 305 46.9
FAN20G0430 Fragaria x ananassa HOM05D000822 ORTHO05D004949 2.5e-72 276.6 319 46.4
TPR.G3138 Trifolium pratense HOM05D000822 ORTHO05D004949 2.5e-72 276.6 319 47.0
TWI34G0044 Tripterygium wilfordii HOM05D000822 ORTHO05D004949 2.5e-72 276.6 314 46.8
DCAR_031550 Daucus carota HOM05D000822 ORTHO05D004949 3.2e-72 276.2 299 45.5
Gohir.A05G054300 Gossypium hirsutum HOM05D000822 ORTHO05D004949 3.2e-72 276.2 302 47.0
CANSAT21G1716 Cannabis sativa HOM05D000822 ORTHO05D004949 4.2e-72 275.8 300 47.3
Gohir.D05G056700 Gossypium hirsutum HOM05D000822 ORTHO05D004949 4.2e-72 275.8 299 46.8
COL.COLO4_18849 Corchorus olitorius HOM05D000822 ORTHO05D004949 5.5e-72 275.4 307 47.2
FvH4_2g29170 Fragaria vesca HOM05D000822 ORTHO05D004949 5.5e-72 275.4 307 47.2
FAN15G3685 Fragaria x ananassa HOM05D000822 ORTHO05D004949 5.5e-72 275.4 307 47.2
FAN24G1467 Fragaria x ananassa HOM05D000822 ORTHO05D004949 5.5e-72 275.4 307 47.2
VMungo1309G0438 Vigna mungo HOM05D000822 ORTHO05D004949 7.2e-72 275.0 308 46.4
arahy.Tifrunner.gnm1.ann1.W9XA7T Arachis hypogaea HOM05D000822 ORTHO05D004949 1.2e-71 274.2 299 47.8
PGSC0003DMG400023601 Solanum tuberosum HOM05D000822 ORTHO05D004949 1.2e-71 274.2 312 46.5
arahy.Tifrunner.gnm1.ann1.CJD9B0 Arachis hypogaea HOM05D000822 ORTHO05D004949 1.6e-71 273.9 301 47.5
Hund04534 Selenicereus undatus HOM05D000822 ORTHO05D004949 2.1e-71 273.5 311 45.0
Lsat_1_v5_gn_1_44761 Lactuca sativa HOM05D000822 ORTHO05D004949 1.8e-70 270.4 308 45.5
Solyc04g014870.3 Solanum lycopersicum HOM05D000822 ORTHO05D004949 4.0e-70 269.2 312 45.5
Medtr3g107390 Medicago truncatula HOM05D000822 ORTHO05D004949 5.2e-70 268.9 298 48.0
CAN.G1263.25 Capsicum annuum HOM05D000822 ORTHO05D004949 8.8e-70 268.1 298 46.6
ATR1120G112 Amborella trichopoda HOM05D000822 ORTHO05D004949 1.2e-69 267.7 299 44.1
Ca_15730_v3 Cicer arietinum L. HOM05D000822 ORTHO05D004949 1.5e-69 267.3 299 47.2
Actinidia25858 Actinidia chinensis HOM05D000822 ORTHO05D004949 2.0e-69 266.9 324 43.2
Sopen04g007000 Solanum pennellii HOM05D000822 ORTHO05D004949 2.0e-69 266.9 312 45.5
TWI18G0740 Tripterygium wilfordii HOM05D000822 ORTHO05D004949 3.4e-69 266.2 301 45.5
SalBow4G2024 Salvia bowleyana HOM05D000822 ORTHO05D004949 1.3e-68 264.2 300 43.7
SEGI_34001 Sequoiadendron giganteum HOM05D000822 ORTHO05D004949 2.2e-68 263.5 302 42.1
Nn8g39460 Nelumbo nucifera HOM05D000822 ORTHO05D004949 2.8e-68 263.1 272 49.3
MSTRG.11622 Avicennia marina HOM05D000822 ORTHO05D004949 3.7e-68 262.7 299 46.2
Lalb_Chr23g0268561 Lupinus albus HOM05D000822 ORTHO05D004949 4.8e-68 262.3 301 44.2
HanXRQChr03g0088731 Helianthus annuus HOM05D000822 ORTHO05D004949 1.1e-67 261.2 301 44.5
SEGI_33211 Sequoiadendron giganteum HOM05D000822 ORTHO05D004949 1.8e-67 260.4 294 42.5
Psat0s2233g0200 Pisum sativum HOM05D000822 ORTHO05D004949 3.1e-67 259.6 298 46.3
unitig_4.g30344 Utricularia gibba HOM05D000822 ORTHO05D018169 1.7e-65 253.8 303 41.9
Actinidia22350 Actinidia chinensis HOM05D000822 ORTHO05D004949 2.3e-65 253.4 288 45.8
vmacro23460 Vaccinium macrocarpon HOM05D000822 ORTHO05D004949 3.8e-65 252.7 303 44.2
Migut.A00048 Erythranthe guttata HOM05D000822 ORTHO05D004949 5.0e-65 252.3 299 42.8
Sopen08g024460 Solanum pennellii HOM05D000822 ORTHO05D004949 5.0e-65 252.3 299 45.5
unitig_748.g8226 Utricularia gibba HOM05D000822 ORTHO05D018169 5.0e-65 252.3 303 41.6
Eucgr.C02782 Eucalyptus grandis HOM05D000822 ORTHO05D004949 6.6e-65 251.9 309 42.7
Solyc08g075820.4 Solanum lycopersicum HOM05D000822 ORTHO05D004949 4.2e-64 249.2 299 45.2
SEGI_40615 Sequoiadendron giganteum HOM05D000822 ORTHO05D004949 1.2e-63 247.7 288 41.3
PGSC0003DMG400030858 Solanum tuberosum HOM05D000822 ORTHO05D004949 8.0e-63 245.0 299 44.5
SEGI_01501 Sequoiadendron giganteum HOM05D000822 ORTHO05D004949 4.0e-62 242.7 304 41.1
SEGI_30307 Sequoiadendron giganteum HOM05D000822 ORTHO05D004949 4.0e-62 242.7 304 41.1
ATR1120G049 Amborella trichopoda HOM05D000822 ORTHO05D004949 2.6e-61 240.0 299 40.8
ECA248G3419 Erigeron canadensis HOM05D000822 ORTHO05D004949 1.7e-60 237.3 298 41.6
SGA_v2.0_scaffold64G21918 Striga asiatica HOM05D000822 ORTHO05D004949 1.8e-59 233.8 300 40.3
Dinv30147 Davidia involucrata HOM05D000822 ORTHO05D004949 3.2e-59 233.0 214 52.3
ECA233G2786 Erigeron canadensis HOM05D000822 ORTHO05D004949 1.6e-58 230.7 303 40.3
HanXRQChr06g0181241 Helianthus annuus HOM05D000822 ORTHO05D004949 1.3e-57 227.6 279 41.6
Dinv18248 Davidia involucrata HOM05D000822 ORTHO05D004949 4.9e-52 209.1 183 53.6
CAN.G1427.13 Capsicum annuum HOM05D000822 ORTHO05D004949 1.1e-51 208.0 312 40.1
CSS0029415 Camellia sinensis var. sinensis HOM05D000822 ORTHO05D004949 1.7e-49 200.7 199 48.2
Eucgr.C02779 Eucalyptus grandis HOM05D000822 ORTHO05D004949 2.3e-49 200.3 322 37.3
FAN27G2931 Fragaria x ananassa HOM05D000822 ORTHO05D004949 1.4e-46 191.0 180 52.2
Zm00001eb389110 Zea mays HOM05D000822 ORTHO05D004949 3.1e-46 189.9 315 36.2
Atru.chr7.2415 Acer truncatum HOM05D000822 ORTHO05D018169 3.1e-30 136.7 164 47.0
Zm00001eb389620 Zea mays HOM05D000822 ORTHO05D051652 5.8e-29 132.5 179 39.7
Cpa.g.sc117.8 Carica papaya HOM05D000822 ORTHO05D004949 1.1e-27 128.3 117 48.7
Oeu057301.1 Olea europaea HOM05D000822 ORTHO05D004949 3.5e-26 123.2 77 70.1
GSVIVG01035851001 Vitis vinifera HOM05D000822 ORTHO05D004949 1.0e-25 121.7 138 48.6
AagrBONN_evm.TU.Sc2ySwM_368.304 Anthoceros agrestis HOM05D000822 ORTHO05D004949 8.1e-23 112.1 287 29.6
Cc08_g00760 Coffea canephora HOM05D000822 ORTHO05D004949 8.1e-23 112.1 77 66.2
Zm00001eb389130 Zea mays HOM05D000822 ORTHO05D051652 9.3e-19 98.6 114 44.7
RcHm_v2.0_Chr6g0298021 Rosa chinensis HOM05D000822 ORTHO05D004949 1.0e-17 95.1 171 33.3
Mapoly0151s0009 Marchantia polymorpha HOM05D000822 ORTHO05D004949 8.7e-17 92.0 302 26.8
FvH4_2g29160 Fragaria vesca HOM05D000822 ORTHO05D004949 4.3e-16 89.7 169 31.4
FAN24G0815 Fragaria x ananassa HOM05D000822 ORTHO05D004949 4.3e-16 89.7 169 31.4
FAN27G0118 Fragaria x ananassa HOM05D000822 ORTHO05D004949 4.3e-16 89.7 169 31.4
Pp3c19_17100 Physcomitrium patens HOM05D000822 ORTHO05D004949 5.6e-16 89.4 235 28.1
FAN15G1884 Fragaria x ananassa HOM05D000822 ORTHO05D004949 9.6e-16 88.6 169 31.4
HanXRQChr01g0030811 Helianthus annuus HOM05D000822 ORTHO05D018169 1.3e-15 88.2 129 35.7
FAN20G1728 Fragaria x ananassa HOM05D000822 ORTHO05D004949 2.1e-15 87.4 169 30.8
AT2G05370 Arabidopsis thaliana HOM05D000822 ORTHO05D018169 3.1e-14 83.6 156 37.2
RcHm_v2.0_Chr7g0220451 Rosa chinensis HOM05D000822 ORTHO05D018169 3.8e-12 76.6 162 30.9
FAN27G3339 Fragaria x ananassa HOM05D000822 ORTHO05D018169 1.4e-11 74.7 102 42.2
SalBow7G3435 Salvia bowleyana HOM05D000399 ORTHO05D000304 2.8e-07 60.5 55 47.3
CBR_g18917 Chara braunii HOM05D000019 ORTHO05D000048 1.4e-06 58.2 94 29.8
MBI19_g26463_MAGBIO Magnolia biondii HOM05D000822 ORTHO05D002021 4.0e-06 56.6 190 26.3


User provided reference genes

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