Gene: Solyc08g075820.4

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc08g075820.4
  • Transcript Identifier Solyc08g075820.4.1
  • Gene Type Coding gene
  • Location SL4.0ch08 : 58026580-58030630 : positive

Gene Family Information

  • ID HOM05D000822
  • #Genes/#Species 723/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc08g075820.4.1
  • uniprot A0A3Q7HQT3
  • gene_id Solyc08g075820

Descriptions

  • Description RNA-dependent RNA polymerase6b
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0070919
IBA
GOA Databaseproduction of siRNA involved in chromatin silencing by small RNA
GO:0010267
ISO
PLAZA Integrative Orthologyproduction of ta-siRNAs involved in RNA interference AT3G49500
GO:0016246
ISO
PLAZA Integrative OrthologyRNA interference AT3G49500
GO:0016441
ISO
PLAZA Integrative Orthologyposttranscriptional gene silencing AT3G49500
GO:0051607
ISO
PLAZA Integrative Orthologydefense response to virus AT3G49500
GO:0035196
ISO
PLAZA Integrative Orthologyproduction of miRNAs involved in gene silencing by miRNA AT3G49500
GO:0048366
ISO
PLAZA Integrative Orthologyleaf development AT3G49500
GO:0048544
ISO
PLAZA Integrative Orthologyrecognition of pollen AT3G49500
GO:0048467
ISO
PLAZA Integrative Orthologygynoecium development AT3G49500
GO:0009616
ISO
PLAZA Integrative OrthologyRNAi-mediated antiviral immune response AT3G49500
GO:0010492
ISO
PLAZA Integrative Orthologymaintenance of shoot apical meristem identity Os01g0527600
GO:0048440
ISO
PLAZA Integrative Orthologycarpel development AT3G49500
GO:0030422
IBA
GOA Databaseproduction of siRNA involved in RNA interference
GO:0031047
IEA
GOA Databasegene silencing by RNA
GO:0031047
IDA
Gene Ontologygene silencing by RNA1
GO:0001172
IEA
GOA Databasetranscription, RNA-templated

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003968
IBA
IEA
GOA DatabaseRNA-directed 5'-3' RNA polymerase activity
GO:0003968
IDA
Gene OntologyRNA-directed 5'-3' RNA polymerase activity1
GO:0003968
IEA
InterProRNA-directed 5'-3' RNA polymerase activity
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0016740
IEA
GOA Databasetransferase activity
GO:0003723
IEA
GOA DatabaseRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT3G49500
GO:0031380
IBA
GOA Databasenuclear RNA-directed RNA polymerase complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR007855 RNA-dependent RNA polymerase, eukaryotic-type
IPR035979 RNA-binding domain superfamily
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
Mapman id Description
16.9.1.1 RNA processing.mRNA silencing.transacting siRNA pathway.ssRNA polymerase (RDR6)