Gene: Os01g0527600
General Information
Structural Information
- Species Oryza sativa ssp. japonica
- Gene Identifier Os01g0527600
- Transcript Identifier Os01t0527600-01
- Gene Type Coding gene
- Location chr01 : 18940642-18945531 : negative
Gene Family Information
- ID HOM05D000822
- #Genes/#Species 723/96
- Phylogenetic origin
- ID ORTHO05D004949
- #Genes/#Species 167/94
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Os01t0527600-01
- MSU-ID LOC_Os01g34350.1
- symbol OsRDR6
- symbol sh2
- symbol SHL2
- symbol shl2
- name RNA-dependent RNA polymerase 6
- name SHOOTLESS2
- name Probable RNA-dependent RNA polymerase SHL2
- name shootless-2
- name Protein SHOOTLESS 2
- name rod-like lemma
- name shootless 2
- uniprot Q8LHH9
Descriptions
- Description RNA-dependent RNA polymerase, Small RNA biogenesis, Regulation of shoot apical meristem (SAM) initiation, Spikelet development
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0048366 | IEA | GOA Database | leaf development | |
| GO:0016441 | ISO | PLAZA Integrative Orthology | posttranscriptional gene silencing | AT3G49500 |
| GO:0090065 | ISO | PLAZA Integrative Orthology | regulation of production of siRNA involved in RNA interference | Solyc04g014870.3 |
| GO:0035196 | ISO | PLAZA Integrative Orthology | production of miRNAs involved in gene silencing by miRNA | AT3G49500 |
| GO:0048440 | ISO | PLAZA Integrative Orthology | carpel development | AT3G49500 |
| GO:0016246 | IMP IEA | GOA Database | RNA interference | |
| GO:0010267 | IEA | GOA Database | production of ta-siRNAs involved in RNA interference | |
| GO:0009616 | IEA | GOA Database | RNAi-mediated antiviral immune response | |
| GO:0051607 | IEA | GOA Database | defense response to virus | |
| GO:0048544 | IEA | GOA Database | recognition of pollen | |
| GO:0048467 | IEA | GOA Database | gynoecium development | |
| GO:0010492 | IMP | GOA Database | maintenance of shoot apical meristem identity | |
| GO:0030422 | IBA | GOA Database | production of siRNA involved in RNA interference | |
| GO:0070919 | IBA | GOA Database | production of siRNA involved in chromatin silencing by small RNA | |
| GO:0031047 | IEA | GOA Database | gene silencing by RNA | |
| GO:0001172 | IEA | GOA Database | transcription, RNA-templated |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003968 | IBA IEA | GOA Database | RNA-directed 5'-3' RNA polymerase activity | |
| GO:0003968 | IEA | InterPro | RNA-directed 5'-3' RNA polymerase activity | |
| GO:0016740 | IEA | GOA Database | transferase activity | |
| GO:0016779 | IEA | GOA Database | nucleotidyltransferase activity | |
| GO:0003723 | IEA | GOA Database | RNA binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0031380 | IBA | GOA Database | nuclear RNA-directed RNA polymerase complex |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR007855 | RNA-dependent RNA polymerase, eukaryotic-type |
| Mapman id | Description |
|---|---|
| 16.9.1.1 | RNA processing.mRNA silencing.transacting siRNA pathway.ssRNA polymerase (RDR6) |