Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_006235 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.6e-158 562.8 295 100.0
arahy.Tifrunner.gnm1.ann1.7LJM3H Arachis hypogaea HOM05D004330 ORTHO05D005182 1.7e-112 409.8 276 81.5
arahy.Tifrunner.gnm1.ann1.A4ASB6 Arachis hypogaea HOM05D004330 ORTHO05D005182 1.7e-112 409.8 276 81.5
arahy.Tifrunner.gnm1.ann1.KU2W2N Arachis hypogaea HOM05D004330 ORTHO05D005182 1.7e-112 409.8 276 81.5
MD08G1244900 Malus domestica HOM05D004330 ORTHO05D005182 1.7e-112 409.8 261 83.1
Prupe.1G566400 Prunus persica HOM05D004330 ORTHO05D005182 8.6e-112 407.5 262 83.2
PGR031G1280 Punica granatum HOM05D004330 ORTHO05D005182 1.9e-111 406.4 261 83.9
RcHm_v2.0_Chr6g0249411 Rosa chinensis HOM05D004330 ORTHO05D005182 1.9e-111 406.4 261 83.1
Dinv22060 Davidia involucrata HOM05D004330 ORTHO05D005182 3.3e-111 405.6 261 83.1
Nn6g32085 Nelumbo nucifera HOM05D004330 ORTHO05D005182 1.2e-110 403.7 261 83.9
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 1.6e-110 403.3 242 88.0
GSVIVG01012102001 Vitis vinifera HOM05D004330 ORTHO05D005182 1.6e-110 403.3 261 83.1
MD15G1440000 Malus domestica HOM05D004330 ORTHO05D005182 2.1e-110 402.9 263 82.5
Atru.chr13.2589 Acer truncatum HOM05D004330 ORTHO05D005182 1.0e-109 400.6 261 82.0
Actinidia16901 Actinidia chinensis HOM05D004330 ORTHO05D005182 1.0e-109 400.6 261 81.2
Duzib177G1138 Durio zibethinus HOM05D004330 ORTHO05D005182 1.4e-109 400.2 261 83.1
Actinidia29358 Actinidia chinensis HOM05D004330 ORTHO05D005182 1.8e-109 399.8 260 81.9
TWI12G0377 Tripterygium wilfordii HOM05D004330 ORTHO05D005182 1.8e-109 399.8 261 80.5
CSS0001083 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 2.3e-109 399.4 258 82.2
Aqoxy5G00868 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 3.1e-109 399.1 261 82.8
MBI16_g23303_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 4.0e-109 398.7 261 81.6
Cfa008036 Carpinus fangiana HOM05D004330 ORTHO05D005182 5.2e-109 398.3 261 81.2
QL09p001201 Quercus lobata HOM05D004330 ORTHO05D005182 6.8e-109 397.9 261 80.5
CiPaw.03G012300 Carya illinoinensis HOM05D004330 ORTHO05D005182 8.9e-109 397.5 261 82.8
Nitab4.5_0000079g0120 Nicotiana tabacum HOM05D004330 ORTHO05D005182 8.9e-109 397.5 261 80.1
Sabra06G0020300 Salix brachista HOM05D004330 ORTHO05D005182 8.9e-109 397.5 261 81.2
Phvul.006G106700 Phaseolus vulgaris HOM05D004330 ORTHO05D005182 1.2e-108 397.1 261 81.2
Thecc.08G188100 Theobroma cacao HOM05D004330 ORTHO05D005182 1.2e-108 397.1 261 82.4
Cpa.g.sc249.10 Carica papaya HOM05D004330 ORTHO05D005182 2.0e-108 396.4 259 80.7
Hma1.2p1_0016F.1_g011010 Hydrangea macrophylla HOM05D004330 ORTHO05D005182 2.0e-108 396.4 261 82.4
Lj5g0027584 Lotus japonicus HOM05D004330 ORTHO05D005182 2.0e-108 396.4 259 81.1
Os03g0417900 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 2.0e-108 396.4 261 79.7
PSO210G1668 Papaver somniferum HOM05D004330 ORTHO05D005182 2.6e-108 396.0 261 81.6
PSO761G0081 Papaver somniferum HOM05D004330 ORTHO05D005182 2.6e-108 396.0 261 81.6
VMungo0540G0979 Vigna mungo HOM05D004330 ORTHO05D005182 2.6e-108 396.0 261 80.8
Nitab4.5_0007117g0020 Nicotiana tabacum HOM05D004330 ORTHO05D005182 3.4e-108 395.6 261 79.7
Eucgr.C04264 Eucalyptus grandis HOM05D004330 ORTHO05D005182 5.8e-108 394.8 261 81.6
Gohir.D05G252400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 5.8e-108 394.8 261 82.0
Lj7C415G17 Lonicera japonica HOM05D004330 ORTHO05D005182 5.8e-108 394.8 261 80.5
Glyma.03G252000 Glycine max HOM05D004330 ORTHO05D005182 7.5e-108 394.4 261 80.5
FvH4_2g00140 Fragaria vesca HOM05D004330 ORTHO05D005182 9.8e-108 394.0 261 80.1
Gohir.A05G251400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 9.8e-108 394.0 261 81.2
Gorai.009G264800 Gossypium raimondii HOM05D004330 ORTHO05D005182 9.8e-108 394.0 261 81.2
Potri.006G027100 Populus trichocarpa HOM05D004330 ORTHO05D005182 9.8e-108 394.0 261 80.5
Cc10_g16170 Coffea canephora HOM05D004330 ORTHO05D005182 1.3e-107 393.7 242 85.5
CSS0008451 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 1.7e-107 393.3 261 81.2
Glyma.19G249400 Glycine max HOM05D004330 ORTHO05D005182 2.9e-107 392.5 261 80.1
Oeu020638.1 Olea europaea HOM05D004330 ORTHO05D005182 2.9e-107 392.5 259 80.7
Medtr1g079770 Medicago truncatula HOM05D004330 ORTHO05D005182 3.7e-107 392.1 242 84.3
Peaxi162Scf00078g01141 Petunia axillaris HOM05D004330 ORTHO05D005182 3.7e-107 392.1 259 80.3
Sc17g0000550 Simmondsia chinensis HOM05D004330 ORTHO05D005182 3.7e-107 392.1 261 80.5
ECA246G0284 Erigeron canadensis HOM05D004330 ORTHO05D005182 6.4e-107 391.3 261 80.1
Lalb_Chr04g0261991 Lupinus albus HOM05D004330 ORTHO05D005182 6.4e-107 391.3 259 79.5
ATR0580G447 Amborella trichopoda HOM05D004330 ORTHO05D005182 1.1e-106 390.6 261 79.7
HanXRQChr05g0150611 Helianthus annuus HOM05D004330 ORTHO05D005182 1.1e-106 390.6 261 79.7
Ciclev10019077m.g Citrus clementina HOM05D004330 ORTHO05D005182 1.4e-106 390.2 261 80.1
Solyc02g094090.4 Solanum lycopersicum HOM05D004330 ORTHO05D005182 4.1e-106 388.7 261 78.9
Sopen02g038710 Solanum pennellii HOM05D004330 ORTHO05D005182 4.1e-106 388.7 261 78.9
FAN24G1765 Fragaria x ananassa HOM05D004330 ORTHO05D005182 5.4e-106 388.3 265 78.9
CAN.G473.93 Capsicum annuum HOM05D004330 ORTHO05D005182 1.2e-105 387.1 266 77.4
DCAR_024855 Daucus carota HOM05D004330 ORTHO05D005182 1.6e-105 386.7 284 75.4
Nitab4.5_0007150g0080 Nicotiana tabacum HOM05D004330 ORTHO05D005182 2.0e-105 386.3 261 78.2
COL.COLO4_33595 Corchorus olitorius HOM05D004330 ORTHO05D005182 3.5e-105 385.6 291 74.6
CANSAT01G1169 Cannabis sativa HOM05D004330 ORTHO05D005182 7.8e-105 384.4 261 78.2
Manes.15G103100 Manihot esculenta HOM05D004330 ORTHO05D005182 7.8e-105 384.4 261 78.9
Migut.G00904 Erythranthe guttata HOM05D004330 ORTHO05D005182 6.6e-104 381.3 272 74.6
FAN19G3045 Fragaria x ananassa HOM05D004330 ORTHO05D005182 8.6e-104 380.9 265 77.7
vmacro06107 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 8.6e-104 380.9 289 72.7
AT1G71270 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 1.1e-103 380.6 259 76.8
MSTRG.22475 Avicennia marina HOM05D004330 ORTHO05D005182 1.1e-103 380.6 242 81.0
AUR62024682 Chenopodium quinoa HOM05D004330 ORTHO05D005182 1.1e-103 380.6 261 78.9
Rhsim01G0101300 Rhododendron simsii HOM05D004330 ORTHO05D005182 1.5e-103 380.2 272 76.5
Carub.0002s1815 Capsella rubella HOM05D004330 ORTHO05D005182 1.9e-103 379.8 259 76.1
Sp5g26470 Schrenkiella parvula HOM05D004330 ORTHO05D005182 2.5e-103 379.4 259 76.8
Thhalv10018205m.g Eutrema salsugineum HOM05D004330 ORTHO05D005182 3.3e-103 379.0 261 75.5
Psat6g142240 Pisum sativum HOM05D004330 ORTHO05D005182 4.3e-103 378.6 242 82.6
AL2G30885 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 5.6e-103 378.3 259 76.4
Ca_09987_v3 Cicer arietinum L. HOM05D004330 ORTHO05D005182 5.6e-103 378.3 242 82.6
BcaB03g14885 Brassica carinata HOM05D004330 ORTHO05D005182 7.3e-103 377.9 259 76.4
BcaC08g46563 Brassica carinata HOM05D004330 ORTHO05D005182 7.3e-103 377.9 259 76.4
C06p45370 Brassica napus HOM05D004330 ORTHO05D005182 7.3e-103 377.9 259 76.4
Nitab4.5_0002887g0010 Nicotiana tabacum HOM05D004330 ORTHO05D005182 7.3e-103 377.9 238 82.8
EL10As5g23498 Beta vulgaris HOM05D004330 ORTHO05D005182 1.2e-102 377.1 261 78.5
A07p37610 Brassica napus HOM05D004330 ORTHO05D005182 1.6e-102 376.7 259 76.1
BolC6t39595H Brassica oleracea HOM05D004330 ORTHO05D005182 2.1e-102 376.3 259 76.1
TPR.G10262 Trifolium pratense HOM05D004330 ORTHO05D005182 8.0e-102 374.4 242 82.2
CiPaw.04G008600 Carya illinoinensis HOM05D004330 ORTHO05D005182 1.4e-101 373.6 261 77.8
AL2G30900 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 1.8e-101 373.2 261 75.1
BraA07t31323Z Brassica rapa HOM05D004330 ORTHO05D005182 1.8e-101 373.2 260 76.2
SalBow6G7193 Salvia bowleyana HOM05D004330 ORTHO05D005182 3.1e-101 372.5 261 75.1
Ah.11g049400 Amaranthus hybridus HOM05D004330 ORTHO05D005182 4.0e-101 372.1 261 77.8
Lsat_1_v5_gn_6_109860 Lactuca sativa HOM05D004330 ORTHO05D005182 8.9e-101 370.9 261 76.6
Aa31LG4G9240 Aethionema arabicum HOM05D004330 ORTHO05D005182 1.2e-100 370.5 268 73.1
THA.LOC104803377 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 1.5e-100 370.2 261 73.9
Aqoxy2G00735 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 2.6e-100 369.4 261 77.4
Sed0024292 Sechium edule HOM05D004330 ORTHO05D005182 3.5e-97 359.0 261 75.5
MELO3C008109.2 Cucumis melo HOM05D004330 ORTHO05D005182 6.0e-97 358.2 261 75.1
ClCG11G008260 Citrullus lanatus HOM05D004330 ORTHO05D005182 7.8e-97 357.8 259 75.7
CDE03G0281 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 1.0e-96 357.5 236 82.6
CsaV3_2G033380 Cucumis sativus L. HOM05D004330 ORTHO05D005182 1.7e-96 356.7 261 75.1
unitig_37.g12692 Utricularia gibba HOM05D004330 ORTHO05D005182 1.7e-96 356.7 242 76.0
AT1G71300 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 2.5e-95 352.8 248 74.2
SHI24508 Sapria himalayana HOM05D004330 ORTHO05D005182 9.5e-95 350.9 250 75.2
THA.LOC104823378 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 3.1e-93 345.9 259 70.7
SalBow6G1408 Salvia bowleyana HOM05D004330 ORTHO05D005182 4.0e-93 345.5 222 81.1
Carub.0002s1817 Capsella rubella HOM05D004330 ORTHO05D005182 6.4e-91 338.2 261 67.8
Mapoly0091s0001 Marchantia polymorpha HOM05D004330 ORTHO05D005182 5.2e-85 318.5 259 63.7
AagrBONN_evm.TU.Sc2ySwM_228.5612 Anthoceros agrestis HOM05D004330 ORTHO05D005182 4.2e-82 308.9 259 61.4
AagrBONN_evm.TU.Sc2ySwM_228.5613 Anthoceros agrestis HOM05D004330 ORTHO05D005182 4.2e-82 308.9 259 61.4
Pp3c4_27380 Physcomitrium patens HOM05D004330 ORTHO05D005182 9.2e-82 307.8 259 63.7
CBR_g54934 Chara braunii HOM05D004330 ORTHO05D005182 7.8e-81 304.7 263 61.6
SMO304G0018 Selaginella moellendorffii HOM05D004330 ORTHO05D005182 2.1e-78 296.6 261 60.2
HPP92_006305 Vanilla planifolia HOM05D004330 ORTHO05D005182 9.9e-76 287.7 159 98.1
Os10g0488300 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 3.3e-71 272.7 242 57.0
COL.COLO4_37491 Corchorus olitorius HOM05D004330 ORTHO05D005182 4.8e-70 268.9 166 86.1
AUR62011839 Chenopodium quinoa HOM05D004330 ORTHO05D005182 2.6e-68 263.1 166 83.7
Zm00001eb045280 Zea mays HOM05D004330 ORTHO05D005182 7.9e-65 251.5 247 55.1
FvH4_6g22200 Fragaria vesca HOM05D004330 ORTHO05D005182 2.8e-62 243.0 166 78.9
Cre08.g367200 Chlamydomonas reinhardtii HOM05D004330 ORTHO05D005182 6.9e-61 238.4 239 50.2
Zm00001eb393130 Zea mays HOM05D004330 ORTHO05D005182 1.9e-58 230.3 140 83.6
MCO11G104 Micromonas commoda HOM05D004330 ORTHO05D005182 1.3e-54 217.6 238 49.2
QL04p036179 Quercus lobata HOM05D004330 ORTHO05D037441 4.5e-52 209.1 179 67.0
QL09p008022 Quercus lobata HOM05D004330 ORTHO05D005182 1.7e-51 207.2 230 54.8
Haze_02242 Corylus avellana HOM05D004330 ORTHO05D005182 1.6e-49 200.7 274 47.1
FAN14G0768 Fragaria x ananassa HOM05D004330 ORTHO05D005182 1.9e-47 193.7 166 66.9
Hund19537 Selenicereus undatus HOM05D004330 ORTHO05D005182 3.3e-47 193.0 128 81.2
Hund19535 Selenicereus undatus HOM05D004330 ORTHO05D005182 1.5e-44 184.1 113 85.8
Nitab4.5_0006062g0030 Nicotiana tabacum HOM05D004330 ORTHO05D005182 1.0e-43 181.4 118 81.4
Rhsim02G0174700 Rhododendron simsii HOM05D004330 ORTHO05D005182 1.8e-40 170.6 111 84.7
PRCOL_00005416 Prasinoderma coloniale HOM05D004330 ORTHO05D005182 3.9e-40 169.5 256 42.2
vmacro23409 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 1.8e-37 160.6 164 56.7
SEGI_19884 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 2.2e-35 153.7 111 70.3
CARHR152420 Cardamine hirsuta HOM05D004330 ORTHO05D005182 2.1e-25 120.6 139 51.8
HPP92_006290 Vanilla planifolia HOM05D004330 ORTHO05D005182 4.1e-21 106.3 50 100.0
Haze_14000 Corylus avellana HOM05D004330 ORTHO05D005182 1.2e-15 88.2 70 68.6
COL.COLO4_23503 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.3e-14 84.7 56 76.8
Cfa027264 Carpinus fangiana HOM05D004330 ORTHO05D005182 1.7e-14 84.3 154 31.8
CARHR064590 Cardamine hirsuta HOM05D004330 ORTHO05D005182 2.2e-14 84.0 103 50.5
QL05p049490 Quercus lobata HOM05D000205 ORTHO05D037441 1.0e-08 65.1 40 80.0


User provided reference genes

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