Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_005895 Vanilla planifolia HOM05D004647 ORTHO05D005349 2.3e-131 472.2 243 100.0
Hma1.2p1_0701F.1_g205920 Hydrangea macrophylla HOM05D004647 ORTHO05D005349 1.7e-105 386.3 240 78.8
GSVIVG01007738001 Vitis vinifera HOM05D004647 ORTHO05D005349 3.8e-105 385.2 232 79.7
Potri.012G080300 Populus trichocarpa HOM05D004647 ORTHO05D005349 1.1e-104 383.6 236 78.0
Actinidia19099 Actinidia chinensis HOM05D004647 ORTHO05D005349 1.9e-104 382.9 241 78.8
Lj5A124T65 Lonicera japonica HOM05D004647 ORTHO05D005349 2.4e-104 382.5 231 79.2
Sabra12G0057400 Salix brachista HOM05D004647 ORTHO05D005349 4.2e-104 381.7 236 77.1
TWI15G0781 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 1.2e-103 380.2 242 77.3
ATR0680G372 Amborella trichopoda HOM05D004647 ORTHO05D005349 2.1e-103 379.4 236 76.7
Rhsim12G0164400 Rhododendron simsii HOM05D004647 ORTHO05D005349 2.1e-103 379.4 232 78.9
CiPaw.11G026900 Carya illinoinensis HOM05D004647 ORTHO05D005349 2.7e-103 379.0 232 79.3
Ciclev10021986m.g Citrus clementina HOM05D004647 ORTHO05D005349 2.7e-103 379.0 241 77.6
arahy.Tifrunner.gnm1.ann1.HI7WIW Arachis hypogaea HOM05D004647 ORTHO05D005349 6.0e-103 377.9 235 76.6
arahy.Tifrunner.gnm1.ann1.T8C5SJ Arachis hypogaea HOM05D004647 ORTHO05D005349 6.0e-103 377.9 235 76.6
vmacro16607 Vaccinium macrocarpon HOM05D004647 ORTHO05D005349 6.0e-103 377.9 234 77.8
CANSAT64G1060 Cannabis sativa HOM05D004647 ORTHO05D005349 3.0e-102 375.6 231 77.5
PGR083G2070 Punica granatum HOM05D004647 ORTHO05D005349 3.9e-102 375.2 236 75.4
Prupe.5G174300 Prunus persica HOM05D004647 ORTHO05D005349 8.7e-102 374.0 238 75.6
DCAR_016485 Daucus carota HOM05D004647 ORTHO05D005349 1.1e-101 373.6 241 74.3
Lalb_Chr10g0098541 Lupinus albus HOM05D004647 ORTHO05D005349 1.9e-101 372.9 237 74.3
Cc04_g13970 Coffea canephora HOM05D004647 ORTHO05D005349 2.5e-101 372.5 241 76.3
Glyma.01G053700 Glycine max HOM05D004647 ORTHO05D005349 2.5e-101 372.5 236 75.8
Glyma.02G112000 Glycine max HOM05D004647 ORTHO05D005349 3.3e-101 372.1 235 74.9
QL10p011820 Quercus lobata HOM05D004647 ORTHO05D005349 5.6e-101 371.3 241 77.2
Sc10g0010060 Simmondsia chinensis HOM05D004647 ORTHO05D005349 5.6e-101 371.3 231 77.9
TPR.G14966 Trifolium pratense HOM05D004647 ORTHO05D005349 5.6e-101 371.3 241 74.7
TPR.G19928 Trifolium pratense HOM05D004647 ORTHO05D005349 5.6e-101 371.3 236 74.6
Aqoxy3G01032 Aquilegia oxysepala HOM05D004647 ORTHO05D005349 9.6e-101 370.5 231 79.2
Hund09433 Selenicereus undatus HOM05D004647 ORTHO05D005349 9.6e-101 370.5 241 78.0
PSO017G4490 Papaver somniferum HOM05D004647 ORTHO05D005349 1.2e-100 370.2 231 76.2
Gohir.A03G097600 Gossypium hirsutum HOM05D004647 ORTHO05D005349 1.6e-100 369.8 235 74.5
PSO478G0146 Papaver somniferum HOM05D004647 ORTHO05D005349 1.6e-100 369.8 231 76.2
Lj2g0019057 Lotus japonicus HOM05D004647 ORTHO05D005349 3.6e-100 368.6 241 74.7
Migut.I00016 Erythranthe guttata HOM05D004647 ORTHO05D005349 4.7e-100 368.2 241 75.1
Gorai.005G137000 Gossypium raimondii HOM05D004647 ORTHO05D005349 4.7e-100 368.2 235 74.0
THA.LOC104807116 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 6.2e-100 367.9 240 75.4
THA.LOC104824976 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 6.2e-100 367.9 240 75.4
Atru.chr9.2461 Acer truncatum HOM05D004647 ORTHO05D005349 8.1e-100 367.5 241 74.3
Phvul.002G091200 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 8.1e-100 367.5 230 75.2
Gohir.D02G116700 Gossypium hirsutum HOM05D004647 ORTHO05D005349 1.1e-99 367.1 235 74.0
Psat2g127400 Pisum sativum HOM05D004647 ORTHO05D005349 1.4e-99 366.7 241 74.7
Eucgr.B00371 Eucalyptus grandis HOM05D004647 ORTHO05D005349 2.4e-99 365.9 232 75.4
AUR62030968 Chenopodium quinoa HOM05D004647 ORTHO05D005349 3.1e-99 365.5 238 75.6
Medtr5g043110 Medicago truncatula HOM05D004647 ORTHO05D005349 4.0e-99 365.2 236 73.3
Phvul.003G111100 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 5.3e-99 364.8 235 74.0
TWI53G1063 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 1.5e-98 363.2 242 75.6
MSTRG.11448 Avicennia marina HOM05D004647 ORTHO05D005349 2.0e-98 362.8 241 73.0
MBI16_g05634_MAGBIO Magnolia biondii HOM05D004647 ORTHO05D005349 2.6e-98 362.5 238 73.9
Carub.0004s0503 Capsella rubella HOM05D004647 ORTHO05D005349 9.9e-98 360.5 240 73.8
Os01g0891400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 1.3e-97 360.1 238 73.1
Ca_06453_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 2.9e-97 359.0 221 78.3
ClCG06G016990 Citrullus lanatus HOM05D004647 ORTHO05D005349 3.8e-97 358.6 239 74.1
FAN13G1078 Fragaria x ananassa HOM05D004647 ORTHO05D005349 3.8e-97 358.6 231 74.5
Oeu035987.1 Olea europaea HOM05D004647 ORTHO05D005349 4.9e-97 358.2 241 73.0
CARHR059710 Cardamine hirsuta HOM05D004647 ORTHO05D005349 6.4e-97 357.8 234 73.9
Os01g0661400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 6.4e-97 357.8 238 72.3
COL.COLO4_30028 Corchorus olitorius HOM05D004647 ORTHO05D005349 8.4e-97 357.5 274 67.9
FAN04G0366 Fragaria x ananassa HOM05D004647 ORTHO05D005349 1.1e-96 357.1 238 72.3
EL10Ac5g10752 Beta vulgaris HOM05D004647 ORTHO05D005349 2.4e-96 355.9 223 77.6
RcHm_v2.0_Chr7g0193601 Rosa chinensis HOM05D004647 ORTHO05D005349 3.2e-96 355.5 231 73.6
Sed0013198 Sechium edule HOM05D004647 ORTHO05D005349 3.2e-96 355.5 239 73.2
FAN08G1047 Fragaria x ananassa HOM05D004647 ORTHO05D005349 5.4e-96 354.8 231 74.5
FAN18G2734 Fragaria x ananassa HOM05D004647 ORTHO05D005349 5.4e-96 354.8 231 73.6
Nitab4.5_0000003g0580 Nicotiana tabacum HOM05D004647 ORTHO05D005349 5.4e-96 354.8 230 73.5
AL7G19680 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 1.2e-95 353.6 240 72.1
Manes.14G066300 Manihot esculenta HOM05D004647 ORTHO05D005349 1.2e-95 353.6 214 79.9
Nitab4.5_0000866g0170 Nicotiana tabacum HOM05D004647 ORTHO05D005349 1.6e-95 353.2 230 73.0
Sopen06g027740 Solanum pennellii HOM05D004647 ORTHO05D005349 2.7e-95 352.4 227 74.9
CSS0008435 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 3.5e-95 352.1 241 72.2
MD06G1174300 Malus domestica HOM05D004647 ORTHO05D005349 3.5e-95 352.1 238 73.9
AUR62008215 Chenopodium quinoa HOM05D004647 ORTHO05D005349 1.3e-94 350.1 266 68.0
BcaC01g01036 Brassica carinata HOM05D004647 ORTHO05D005349 2.3e-94 349.4 240 72.5
SGA_v2.0_scaffold90G27942 Striga asiatica HOM05D004647 ORTHO05D005349 2.3e-94 349.4 255 67.8
PGSC0003DMG400027091 Solanum tuberosum HOM05D004647 ORTHO05D005349 3.0e-94 349.0 227 73.6
CAN.G628.78 Capsicum annuum HOM05D004647 ORTHO05D005349 5.1e-94 348.2 232 70.3
Lsat_1_v5_gn_4_75321 Lactuca sativa HOM05D004647 ORTHO05D005349 5.1e-94 348.2 241 69.3
A08p18330 Brassica napus HOM05D004647 ORTHO05D005349 6.6e-94 347.8 240 72.1
BraA08t33790Z Brassica rapa HOM05D004647 ORTHO05D005349 6.6e-94 347.8 240 72.1
Sp7g29960 Schrenkiella parvula HOM05D004647 ORTHO05D005349 8.7e-94 347.4 240 72.5
Solyc06g071460.3 Solanum lycopersicum HOM05D004647 ORTHO05D005349 1.1e-93 347.1 230 73.9
BolC3t21057H Brassica oleracea HOM05D004647 ORTHO05D005349 2.5e-93 345.9 240 72.1
HanXRQChr16g0504011 Helianthus annuus HOM05D004647 ORTHO05D005349 4.3e-93 345.1 232 71.1
AT4G32175 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 5.6e-93 344.7 237 71.7
Zm00001eb157720 Zea mays HOM05D004647 ORTHO05D005349 5.6e-93 344.7 238 71.0
TAR374G0909 Trochodendron aralioides HOM05D004647 ORTHO05D005349 7.3e-93 344.4 209 81.3
Thecc.03G011300 Theobroma cacao HOM05D004647 ORTHO05D005349 2.1e-92 342.8 212 76.9
AT2G25355 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 8.1e-92 340.9 240 69.6
ECA232G2959 Erigeron canadensis HOM05D004647 ORTHO05D005349 3.1e-91 339.0 236 69.5
QL02p100995 Quercus lobata HOM05D004647 ORTHO05D005349 4.0e-91 338.6 335 55.2
unitig_52.g17486 Utricularia gibba HOM05D004647 ORTHO05D005349 5.3e-91 338.2 231 71.9
AL4G16790 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 1.2e-90 337.0 240 68.3
BcaB03g12733 Brassica carinata HOM05D004647 ORTHO05D005349 1.2e-90 337.0 230 72.6
Thhalv10026115m.g Eutrema salsugineum HOM05D004647 ORTHO05D005349 4.5e-90 335.1 240 70.0
SalBow3G4197 Salvia bowleyana HOM05D004647 ORTHO05D005349 1.3e-89 333.6 276 63.4
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 1.1e-88 330.5 232 69.4
FvH4_5g05270 Fragaria vesca HOM05D004647 ORTHO05D005349 1.4e-88 330.1 211 74.9
FAN18G2015 Fragaria x ananassa HOM05D004647 ORTHO05D005349 3.2e-88 328.9 286 59.8
DCAR_028017 Daucus carota HOM05D004647 ORTHO05D005349 9.3e-88 327.4 198 78.3
CARHR240100 Cardamine hirsuta HOM05D004647 ORTHO05D005349 5.1e-86 321.6 240 65.4
Cpa.g.sc124.56 Carica papaya HOM05D004647 ORTHO05D005349 8.7e-86 320.9 203 77.3
CDE11G0116 Ceratophyllum demersum HOM05D004647 ORTHO05D005349 3.3e-85 318.9 205 75.1
Zm00001eb157740 Zea mays HOM05D004647 ORTHO05D005349 1.6e-84 316.6 213 72.8
Peaxi162Scf00689g00228 Petunia axillaris HOM05D004647 ORTHO05D005349 2.8e-84 315.8 198 75.8
MD06G1174500 Malus domestica HOM05D004647 ORTHO05D005349 1.1e-83 313.9 240 67.5
Haze_07464 Corylus avellana HOM05D004647 ORTHO05D005349 1.6e-79 300.1 241 65.1
Carub.0007s0838 Capsella rubella HOM05D004647 ORTHO05D005349 1.3e-78 297.0 190 74.2
Aa31LG2G17760 Aethionema arabicum HOM05D004647 ORTHO05D005349 8.2e-76 287.7 240 62.5
Mapoly0033s0011 Marchantia polymorpha HOM05D004647 ORTHO05D005349 2.6e-74 282.7 243 55.6
Dinv02900 Davidia involucrata HOM05D004647 ORTHO05D005349 1.3e-73 280.4 177 74.6
Pp3c9_4960 Physcomitrium patens HOM05D004647 ORTHO05D005349 2.2e-73 279.6 226 59.3
SMO358G0755 Selaginella moellendorffii HOM05D004647 ORTHO05D005349 5.1e-70 268.5 224 57.6
CsaV3_1G001530 Cucumis sativus L. HOM05D004647 ORTHO05D005349 1.6e-68 263.5 170 75.3
THA.LOC104801749 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 1.8e-67 260.0 168 75.0
THA.LOC104815465 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 1.4e-64 250.4 149 80.5
Nn3g16872 Nelumbo nucifera HOM05D004647 ORTHO05D005349 2.3e-62 243.0 136 85.3
AagrBONN_evm.TU.Sc2ySwM_117.3294 Anthoceros agrestis HOM05D004647 ORTHO05D005349 1.0e-57 227.6 194 59.8
SEGI_17588 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 1.0e-54 217.6 140 75.0
SEGI_39775 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 1.0e-54 217.6 140 75.0
Cre07.g319900 Chlamydomonas reinhardtii HOM05D004647 ORTHO05D005349 4.8e-52 208.8 227 45.4
Sed0007118 Sechium edule HOM05D004647 ORTHO05D005349 2.2e-49 199.9 181 59.7
Zm00001eb359590 Zea mays HOM05D004647 ORTHO05D005349 2.9e-49 199.5 131 73.3
MELO3C026290.2 Cucumis melo HOM05D004647 ORTHO05D005349 3.8e-49 199.1 132 73.5
CSS0025503 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 9.4e-48 194.5 126 74.6
PSO384G3338 Papaver somniferum HOM05D004647 ORTHO05D005349 2.1e-47 193.4 162 62.3
VMungo1215G3307 Vigna mungo HOM05D004647 ORTHO05D005349 2.3e-46 189.9 120 75.0
QL02p101061 Quercus lobata HOM05D004647 ORTHO05D005349 1.1e-45 187.6 119 79.8
VMungo1215G1703 Vigna mungo HOM05D004647 ORTHO05D005349 1.5e-45 187.2 126 69.8
QL02p101105 Quercus lobata HOM05D004647 ORTHO05D005349 4.4e-45 185.7 120 78.3
Medtr5g009430 Medicago truncatula HOM05D004647 ORTHO05D005349 2.0e-42 176.8 118 71.2
CBR_g61059 Chara braunii HOM05D004647 ORTHO05D005349 2.6e-42 176.4 228 43.0
Ca_07701_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 1.4e-35 154.1 128 62.5
Glyma.19G045000 Glycine max HOM05D004647 ORTHO05D005349 3.5e-34 149.4 120 62.5
CSS0039197 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 1.6e-31 140.6 121 62.8
CAN.G110.1 Capsicum annuum HOM05D004647 ORTHO05D005349 2.1e-31 140.2 143 52.4
SEGI_00924 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 4.7e-31 139.0 100 68.0
PRCOL_00002933 Prasinoderma coloniale HOM05D004647 ORTHO05D005349 5.2e-30 135.6 177 41.8
Oeu005668.1 Olea europaea HOM05D004647 ORTHO05D005349 8.8e-30 134.8 85 72.9
Cc00_g25260 Coffea canephora HOM05D004647 ORTHO05D005349 1.1e-27 127.9 67 88.1
Cfa024128 Carpinus fangiana HOM05D004647 ORTHO05D005349 3.1e-27 126.3 242 35.1
Cc00_g18100 Coffea canephora HOM05D004647 ORTHO05D005349 1.6e-26 124.0 81 69.1
PGSC0003DMG400042364 Solanum tuberosum HOM05D004647 ORTHO05D005349 3.8e-25 119.4 91 60.4
Ca_24957_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 1.9e-24 117.1 106 59.4
Ca_22423_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 4.7e-23 112.5 100 63.0
MCO01G631 Micromonas commoda HOM05D004647 ORTHO05D005349 6.1e-23 112.1 193 35.2
SEGI_26695 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 1.0e-22 111.3 90 54.4
Potri.015G075400 Populus trichocarpa HOM05D004647 ORTHO05D005349 7.5e-21 105.1 71 69.0
Cc00_g33640 Coffea canephora HOM05D004647 ORTHO05D005349 7.0e-19 98.6 50 90.0
CSS0048825 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 1.1e-16 91.3 69 63.8
SEGI_09107 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 9.5e-16 88.2 62 69.4
MD14G1181100 Malus domestica HOM05D004647 ORTHO05D005349 3.2e-11 73.2 162 35.8
QL02p027014 Quercus lobata HOM05D004647 ORTHO05D005349 1.1e-08 64.7 36 80.6
QL02p024044 Quercus lobata HOM05D004647 ORTHO05D005349 4.7e-07 59.3 33 72.7


User provided reference genes

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