Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_005288 Vanilla planifolia HOM05D005626 ORTHO05D007372 4.7e-245 850.9 473 100.0
MBI07_g24765_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 8.7e-98 361.7 407 58.0
Atru.chr12.2245_Atru.chr12.2244 Acer truncatum HOM05D005626 ORTHO05D007372 1.9e-97 360.5 392 59.7
Manes.06G012351 Manihot esculenta HOM05D005626 ORTHO05D007372 1.1e-95 354.8 392 57.7
CDE02G3804 Ceratophyllum demersum HOM05D005626 ORTHO05D007372 1.7e-90 337.4 392 57.1
Oeu010695.1 Olea europaea HOM05D005626 ORTHO05D007372 5.1e-90 335.9 418 56.2
Nitab4.5_0005491g0050 Nicotiana tabacum HOM05D005626 ORTHO05D007372 1.8e-87 327.4 401 55.4
Cc02_g01370 Coffea canephora HOM05D005626 ORTHO05D007372 3.1e-87 326.6 389 50.1
Sopen03g022800 Solanum pennellii HOM05D005626 ORTHO05D007372 3.1e-87 326.6 389 55.5
Solyc03g082990.3 Solanum lycopersicum HOM05D005626 ORTHO05D007372 5.3e-87 325.9 398 54.5
Migut.F00199 Erythranthe guttata HOM05D005626 ORTHO05D007372 3.4e-86 323.2 433 53.6
Manes.06G011400 Manihot esculenta HOM05D005626 ORTHO05D007372 2.9e-85 320.1 384 55.5
CANSAT21G0821 Cannabis sativa HOM05D005626 ORTHO05D007372 1.1e-84 318.2 388 54.4
CAN.G481.28 Capsicum annuum HOM05D005626 ORTHO05D007372 2.4e-84 317.0 401 50.9
Peaxi162Scf00740g00226 Petunia axillaris HOM05D005626 ORTHO05D007372 9.3e-84 315.1 401 53.6
PSO063G0511 Papaver somniferum HOM05D005626 ORTHO05D007372 2.5e-81 307.0 417 53.2
Cfa016215 Carpinus fangiana HOM05D005626 ORTHO05D007372 3.7e-80 303.1 326 60.1
PSO170G4344 Papaver somniferum HOM05D005626 ORTHO05D007372 8.1e-80 302.0 398 54.3
RcHm_v2.0_Chr1g0381501 Rosa chinensis HOM05D005626 ORTHO05D007372 7.6e-78 295.4 332 58.4
FAN06G4319 Fragaria x ananassa HOM05D005626 ORTHO05D007372 3.8e-77 293.1 325 58.2
Dinv29256 Davidia involucrata HOM05D005626 ORTHO05D007372 6.4e-77 292.4 401 53.1
Haze_00226 Corylus avellana HOM05D005626 ORTHO05D007372 1.1e-76 291.6 351 56.4
TAR375G0360 Trochodendron aralioides HOM05D005626 ORTHO05D007372 1.9e-76 290.8 325 60.0
FvH4_7g31990 Fragaria vesca HOM05D005626 ORTHO05D007372 2.4e-76 290.4 325 57.8
THA.LOC104799967 Tarenaya hassleriana HOM05D005626 ORTHO05D007372 4.2e-76 289.7 336 55.7
GSVIVG01038569001 Vitis vinifera HOM05D005626 ORTHO05D007372 4.2e-76 289.7 327 60.2
Gohir.D09G179900 Gossypium hirsutum HOM05D005626 ORTHO05D007372 1.2e-75 288.1 350 56.3
AUR62006074 Chenopodium quinoa HOM05D005626 ORTHO05D007372 1.6e-75 287.7 340 54.4
Actinidia18659 Actinidia chinensis HOM05D005626 ORTHO05D007372 2.7e-75 287.0 369 54.5
QL09p007984 Quercus lobata HOM05D005626 ORTHO05D007372 2.7e-75 287.0 334 59.0
unitig_92.g28249 Utricularia gibba HOM05D005626 ORTHO05D007372 2.7e-75 287.0 391 50.9
FAN03G2656 Fragaria x ananassa HOM05D005626 ORTHO05D007032 1.0e-74 285.0 385 51.4
Prupe.2G313200 Prunus persica HOM05D005626 ORTHO05D007372 6.7e-74 282.3 347 54.8
Gorai.006G201900 Gossypium raimondii HOM05D005626 ORTHO05D007372 8.7e-74 282.0 382 49.7
CSS0044766 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 7.4e-73 278.9 344 57.0
arahy.Tifrunner.gnm1.ann1.ULB6CG Arachis hypogaea HOM05D005626 ORTHO05D007372 1.3e-72 278.1 325 56.9
TWI39G0896 Tripterygium wilfordii HOM05D005626 ORTHO05D007372 3.7e-72 276.6 324 58.3
Eucgr.A01448 Eucalyptus grandis HOM05D005626 ORTHO05D007372 8.2e-72 275.4 396 50.3
TPR.G33639 Trifolium pratense HOM05D005626 ORTHO05D007372 1.1e-71 275.0 318 59.4
Hund11648 Selenicereus undatus HOM05D005626 ORTHO05D007372 9.0e-71 271.9 337 52.2
PGR042G1168 Punica granatum HOM05D005626 ORTHO05D007372 5.8e-70 269.2 331 55.6
Lj8A623T21 Lonicera japonica HOM05D005626 ORTHO05D007372 1.0e-69 268.5 400 50.8
Thecc.03G201200 Theobroma cacao HOM05D005626 ORTHO05D007372 1.7e-69 267.7 334 55.7
QL09p008055 Quercus lobata HOM05D005626 ORTHO05D007372 3.8e-69 266.5 333 45.0
Psat5g076080 Pisum sativum HOM05D005626 ORTHO05D007372 8.4e-69 265.4 316 57.6
EL10Ac3g05260 Beta vulgaris HOM05D005626 ORTHO05D007372 4.2e-68 263.1 406 47.8
CSS0003989 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 5.5e-68 262.7 410 40.5
arahy.Tifrunner.gnm1.ann1.CHU3M4 Arachis hypogaea HOM05D005626 ORTHO05D007372 2.1e-67 260.8 325 55.4
MD01G1222800 Malus domestica HOM05D005626 ORTHO05D007372 2.1e-67 260.8 325 54.8
FAN10G2571 Fragaria x ananassa HOM05D005626 ORTHO05D007372 6.0e-67 259.2 390 48.5
ClCG01G000360 Citrullus lanatus HOM05D005626 ORTHO05D007372 1.1e-65 255.0 397 48.9
Sabra15G0008900 Salix brachista HOM05D005626 ORTHO05D007372 1.1e-65 255.0 392 48.2
Potri.015G010800 Populus trichocarpa HOM05D005626 ORTHO05D007372 4.3e-65 253.1 392 48.2
Gohir.A09G185000 Gossypium hirsutum HOM05D005626 ORTHO05D007372 5.7e-65 252.7 296 58.8
ATR0730G125 Amborella trichopoda HOM05D005626 ORTHO05D007372 9.7e-65 251.9 339 54.0
CsaV3_5G000430 Cucumis sativus L. HOM05D005626 ORTHO05D007372 9.7e-65 251.9 418 45.9
CiPaw.06G045100 Carya illinoinensis HOM05D005626 ORTHO05D007372 1.6e-64 251.1 361 50.7
SalBow4G1489 Salvia bowleyana HOM05D005626 ORTHO05D007372 2.8e-64 250.4 361 44.6
arahy.Tifrunner.gnm1.ann1.DCMH6Q Arachis hypogaea HOM05D005626 ORTHO05D007372 8.2e-64 248.8 308 55.5
Nn1g00302 Nelumbo nucifera HOM05D005626 ORTHO05D007372 1.1e-63 248.4 406 46.8
arahy.Tifrunner.gnm1.ann1.1DU7LF Arachis hypogaea HOM05D005626 ORTHO05D007372 1.8e-63 247.7 392 46.2
MBI07_g43862_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 2.6e-62 243.8 391 40.9
MELO3C005892.2 Cucumis melo HOM05D005626 ORTHO05D007372 1.0e-61 241.9 397 46.9
Ca_16720_v3 Cicer arietinum L. HOM05D005626 ORTHO05D007372 1.3e-61 241.5 318 55.3
Hma1.2p1_2307F.1_g319430 Hydrangea macrophylla HOM05D005626 ORTHO05D007372 5.0e-61 239.6 345 51.3
AUR62035551 Chenopodium quinoa HOM05D005626 ORTHO05D007372 2.5e-60 237.3 356 41.9
Sc25g0000940 Simmondsia chinensis HOM05D005626 ORTHO05D007372 6.1e-59 232.6 287 56.4
Lj1g0019302 Lotus japonicus HOM05D005626 ORTHO05D007372 5.1e-58 229.6 321 52.6
Aqoxy5G04311 Aquilegia oxysepala HOM05D005626 ORTHO05D007372 3.3e-57 226.9 354 47.7
Phvul.009G051300 Phaseolus vulgaris HOM05D005626 ORTHO05D007372 3.3e-57 226.9 322 52.8
Hma1.2p1_0591F.1_g185250 Hydrangea macrophylla HOM05D005626 ORTHO05D007372 1.3e-56 224.9 326 52.1
Sed0007830 Sechium edule HOM05D005626 ORTHO05D007372 2.2e-56 224.2 367 46.6
Ah.07g205460 Amaranthus hybridus HOM05D005626 ORTHO05D007372 8.2e-56 222.2 410 43.4
BcaB05g22010 Brassica carinata HOM05D005626 ORTHO05D007372 1.1e-55 221.9 366 38.0
AT5G53080 Arabidopsis thaliana HOM05D005626 ORTHO05D007372 1.8e-55 221.1 327 48.9
FAN10G0040 Fragaria x ananassa HOM05D005626 ORTHO05D009683 2.4e-55 220.7 397 44.1
VMungo1309G2515 Vigna mungo HOM05D005626 ORTHO05D007372 3.1e-55 220.3 325 52.6
Aa31LG3G9390 Aethionema arabicum HOM05D005626 ORTHO05D007372 9.1e-55 218.8 339 48.1
COL.COLO4_16792 Corchorus olitorius HOM05D005626 ORTHO05D007032 9.1e-55 218.8 367 47.1
Lalb_Chr08g0240121 Lupinus albus HOM05D005626 ORTHO05D007372 1.5e-54 218.0 337 49.9
Ciclev10020013m.g Citrus clementina HOM05D005626 ORTHO05D007372 3.4e-54 216.9 336 48.5
Duzib084G0104 Durio zibethinus HOM05D005626 ORTHO05D007372 4.5e-54 216.5 333 48.9
MSTRG.27018 Avicennia marina HOM05D005626 ORTHO05D007372 1.0e-53 215.3 310 51.9
Thhalv10013148m.g Eutrema salsugineum HOM05D005626 ORTHO05D007372 2.2e-53 214.2 344 46.8
CSS0000100 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 3.8e-53 213.4 444 36.0
Glyma.04G234300 Glycine max HOM05D005626 ORTHO05D007372 1.9e-52 211.1 327 49.5
Carub.0008s1328 Capsella rubella HOM05D005626 ORTHO05D007372 3.2e-52 210.3 339 46.9
Medtr3g091780 Medicago truncatula HOM05D005626 ORTHO05D007372 9.4e-52 208.8 339 48.4
HanXRQChr15g0485681 Helianthus annuus HOM05D005626 ORTHO05D007372 1.8e-50 204.5 395 43.3
DCAR_010593 Daucus carota HOM05D005626 ORTHO05D007372 1.1e-49 201.8 211 53.6
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 1.5e-49 201.4 335 47.5
Lsat_1_v5_gn_9_49841 Lactuca sativa HOM05D005626 ORTHO05D007372 1.3e-48 198.4 402 42.8
CARHR266100 Cardamine hirsuta HOM05D005626 ORTHO05D007372 2.2e-48 197.6 326 46.0
Mapoly0045s0029 Marchantia polymorpha HOM05D005626 ORTHO05D007372 4.8e-48 196.4 346 45.7
ECA232G0910 Erigeron canadensis HOM05D005626 ORTHO05D007372 6.3e-48 196.1 376 42.8
AL8G27710 Arabidopsis lyrata HOM05D005626 ORTHO05D007372 8.2e-48 195.7 325 46.2
A02p11310 Brassica napus HOM05D005626 ORTHO05D007372 8.2e-48 195.7 326 46.6
BraA02t06193Z Brassica rapa HOM05D005626 ORTHO05D007372 1.8e-47 194.5 326 46.3
C02p18690 Brassica napus HOM05D005626 ORTHO05D007372 4.1e-47 193.4 331 45.0
BolC2t08014H Brassica oleracea HOM05D005626 ORTHO05D007372 9.1e-47 192.2 330 44.8
Sp6g15250 Schrenkiella parvula HOM05D005626 ORTHO05D007372 1.2e-46 191.8 335 45.4
Cpa.g.sc3.101 Carica papaya HOM05D005626 ORTHO05D007372 1.5e-46 191.4 345 45.2
BcaC03g14458 Brassica carinata HOM05D005626 ORTHO05D007372 7.2e-44 182.6 325 44.9
Manes.06G012101 Manihot esculenta HOM05D005626 ORTHO05D007372 2.8e-40 170.6 245 55.5
MBI19_g14786_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 1.4e-39 168.3 138 59.4
Mapoly0001s0084 Marchantia polymorpha HOM05D005626 ORTHO05D007372 5.9e-38 162.9 403 35.2
Manes.06G011750 Manihot esculenta HOM05D005626 ORTHO05D007372 6.5e-37 159.5 203 57.6
Pp3c5_16230 Physcomitrium patens HOM05D005626 ORTHO05D007372 4.7e-35 153.3 334 31.1
BcaB05g22007 Brassica carinata HOM05D005626 ORTHO05D007372 4.4e-33 146.7 330 35.2
Pp3c16_9300 Physcomitrium patens HOM05D005626 ORTHO05D007372 9.7e-33 145.6 347 30.0
PGSC0003DMG400018528 Solanum tuberosum HOM05D005626 ORTHO05D007372 1.7e-32 144.8 131 61.1
MBI19_g14787_MAGBIO Magnolia biondii HOM05D005626 ORTHO05D007372 1.7e-29 134.8 96 63.5
Glyma.06G130333 Glycine max HOM05D005626 ORTHO05D007372 1.6e-27 128.3 126 49.2
Lj1A1021T49 Lonicera japonica HOM05D005626 ORTHO05D007372 1.6e-27 128.3 328 33.8
BcaB01g04215 Brassica carinata HOM05D005626 ORTHO05D007372 3.5e-22 110.5 149 40.9
AagrBONN_evm.TU.Sc2ySwM_369.443 Anthoceros agrestis HOM05D005626 ORTHO05D007372 2.5e-20 104.4 152 38.8
Pp3c5_16240 Physcomitrium patens HOM05D005626 ORTHO05D007372 4.2e-20 103.6 145 37.2
Pp3c23_14930 Physcomitrium patens HOM05D005626 ORTHO05D007372 1.7e-16 91.7 152 38.2
Pp3c8_12740 Physcomitrium patens HOM05D005626 ORTHO05D007372 8.3e-16 89.4 143 37.8
CSS0006573 Camellia sinensis var. sinensis HOM05D005626 ORTHO05D007372 3.1e-15 87.4 85 51.8
Glyma.06G130267 Glycine max HOM05D005626 ORTHO05D007372 7.8e-14 82.8 81 55.6
SEGI_36936 Sequoiadendron giganteum HOM05D005626 ORTHO05D007372 7.3e-12 76.3 77 50.6
Actinidia06140 Actinidia chinensis HOM05D005626 ORTHO05D007372 1.5e-09 68.6 60 58.3
Cfa019813 Carpinus fangiana HOM05D005626 ORTHO05D007372 9.8e-09 65.9 53 58.5
QL09p008114 Quercus lobata HOM05D005626 ORTHO05D007372 9.8e-09 65.9 50 62.0
MD07G1293500 Malus domestica HOM05D005626 ORTHO05D007372 1.1e-07 62.4 54 51.9
QL09p008133 Quercus lobata HOM05D005626 ORTHO05D007372 6.0e-06 56.6 52 55.8


User provided reference genes

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