Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_004621 Vanilla planifolia HOM05D005290 ORTHO05D006040 5.1e-145 517.7 254 100.0
MBI03_g18676_MAGBIO Magnolia biondii HOM05D005290 ORTHO05D006040 4.7e-74 282.0 184 73.4
TAR381G0263 Trochodendron aralioides HOM05D005290 ORTHO05D006040 2.2e-71 273.1 184 70.7
Potri.019G078700 Populus trichocarpa HOM05D005290 ORTHO05D006040 7.0e-70 268.1 182 67.6
Aqoxy6G00108 Aquilegia oxysepala HOM05D005290 ORTHO05D006040 3.5e-69 265.8 184 67.4
Sc01g0002020 Simmondsia chinensis HOM05D005290 ORTHO05D006040 2.9e-68 262.7 183 69.9
Dinv41762 Davidia involucrata HOM05D005290 ORTHO05D006040 5.0e-68 261.9 186 66.7
Os01g0958900 Oryza sativa ssp. japonica HOM05D005290 ORTHO05D006040 8.5e-68 261.2 184 68.5
Nn1g08422 Nelumbo nucifera HOM05D005290 ORTHO05D006040 1.1e-67 260.8 185 67.6
RcHm_v2.0_Chr3g0494621 Rosa chinensis HOM05D005290 ORTHO05D006040 1.9e-67 260.0 185 65.9
Rhsim12G0006000 Rhododendron simsii HOM05D005290 ORTHO05D006040 2.5e-67 259.6 186 66.7
CSS0033470 Camellia sinensis var. sinensis HOM05D005290 ORTHO05D006040 5.5e-67 258.5 184 65.8
CiPaw.07G235300 Carya illinoinensis HOM05D005290 ORTHO05D006040 7.2e-67 258.1 187 66.3
FvH4_5g31560 Fragaria vesca HOM05D005290 ORTHO05D006040 9.4e-67 257.7 184 65.2
vmacro00977 Vaccinium macrocarpon HOM05D005290 ORTHO05D006040 9.4e-67 257.7 186 66.1
AT4G09140 Arabidopsis thaliana HOM05D005290 ORTHO05D006040 1.2e-66 257.3 184 67.4
FAN04G2711 Fragaria x ananassa HOM05D005290 ORTHO05D006040 1.2e-66 257.3 184 65.8
Duzib177G0512 Durio zibethinus HOM05D005290 ORTHO05D006040 1.6e-66 256.9 187 65.8
Glyma.04G254900 Glycine max HOM05D005290 ORTHO05D006040 2.1e-66 256.5 183 65.0
RcHm_v2.0_Chr7g0226931 Rosa chinensis HOM05D005290 ORTHO05D006040 2.1e-66 256.5 185 64.3
Sabra19G0089500 Salix brachista HOM05D005290 ORTHO05D006040 2.1e-66 256.5 182 65.9
Lj3g0002821 Lotus japonicus HOM05D005290 ORTHO05D006040 2.7e-66 256.1 189 63.0
Medtr3g005810 Medicago truncatula HOM05D005290 ORTHO05D006040 3.6e-66 255.8 183 65.6
Ah.05g178620 Amaranthus hybridus HOM05D005290 ORTHO05D006040 6.1e-66 255.0 182 65.9
Zm00001eb362590 Zea mays HOM05D005290 ORTHO05D006040 6.1e-66 255.0 182 65.9
Phvul.005G002000 Phaseolus vulgaris HOM05D005290 ORTHO05D006040 8.0e-66 254.6 182 64.8
CAN.G982.5 Capsicum annuum HOM05D005290 ORTHO05D006040 1.4e-65 253.8 182 64.8
Nitab4.5_0008566g0030 Nicotiana tabacum HOM05D005290 ORTHO05D006040 1.8e-65 253.4 183 64.5
VMungo1080G0256 Vigna mungo HOM05D005290 ORTHO05D006040 1.8e-65 253.4 183 65.6
TPR.G25526 Trifolium pratense HOM05D005290 ORTHO05D006040 2.3e-65 253.1 183 65.0
unitig_26.g9865 Utricularia gibba HOM05D005290 ORTHO05D006040 2.3e-65 253.1 184 66.3
AL6G42870 Arabidopsis lyrata HOM05D005290 ORTHO05D006040 3.0e-65 252.7 182 66.5
Migut.C01329 Erythranthe guttata HOM05D005290 ORTHO05D006040 3.0e-65 252.7 185 64.9
Manes.02G198901 Manihot esculenta HOM05D005290 ORTHO05D006040 4.0e-65 252.3 186 65.1
Prupe.1G555900 Prunus persica HOM05D005290 ORTHO05D006040 4.0e-65 252.3 185 63.8
Hund27128 Selenicereus undatus HOM05D005290 ORTHO05D006040 4.0e-65 252.3 182 65.4
Hund27133 Selenicereus undatus HOM05D005290 ORTHO05D006040 4.0e-65 252.3 182 65.4
BcaC01g04730 Brassica carinata HOM05D005290 ORTHO05D006040 5.2e-65 251.9 182 66.5
Eucgr.F02988 Eucalyptus grandis HOM05D005290 ORTHO05D006040 5.2e-65 251.9 186 64.0
C03p34390 Brassica napus HOM05D005290 ORTHO05D006040 6.8e-65 251.5 182 65.9
BolC3t15749H Brassica oleracea HOM05D005290 ORTHO05D006040 6.8e-65 251.5 182 65.9
Gohir.D13G122700 Gossypium hirsutum HOM05D005290 ORTHO05D006040 6.8e-65 251.5 187 64.2
AUR62004596 Chenopodium quinoa HOM05D005290 ORTHO05D006040 8.8e-65 251.1 185 64.9
Ciclev10019018m.g Citrus clementina HOM05D005290 ORTHO05D006040 8.8e-65 251.1 187 65.2
Oeu059199.1 Olea europaea HOM05D005290 ORTHO05D006040 1.2e-64 250.8 182 64.3
CSS0003964 Camellia sinensis var. sinensis HOM05D005290 ORTHO05D006040 2.0e-64 250.0 178 65.2
MD12G1033300 Malus domestica HOM05D005290 ORTHO05D006040 2.0e-64 250.0 184 63.6
Thecc.08G192800 Theobroma cacao HOM05D005290 ORTHO05D006040 2.0e-64 250.0 187 64.2
DCAR_017434 Daucus carota HOM05D005290 ORTHO05D006040 2.6e-64 249.6 179 63.1
Gorai.013G137700 Gossypium raimondii HOM05D005290 ORTHO05D006040 2.6e-64 249.6 187 63.6
Gohir.A13G118900 Gossypium hirsutum HOM05D005290 ORTHO05D006040 5.7e-64 248.4 186 64.0
Hma1.2p1_0004F.1_g003900 Hydrangea macrophylla HOM05D005290 ORTHO05D006040 5.7e-64 248.4 183 62.8
A03p28460 Brassica napus HOM05D005290 ORTHO05D006040 7.5e-64 248.1 182 64.8
BraA03t12051Z Brassica rapa HOM05D005290 ORTHO05D006040 7.5e-64 248.1 182 64.8
SalBow7G4073 Salvia bowleyana HOM05D005290 ORTHO05D006040 1.3e-63 247.3 184 65.8
Aa31LG9G14750 Aethionema arabicum HOM05D005290 ORTHO05D006040 1.7e-63 246.9 182 65.4
MSTRG.25478 Avicennia marina HOM05D005290 ORTHO05D006040 1.7e-63 246.9 185 64.3
Thhalv10028465m.g Eutrema salsugineum HOM05D005290 ORTHO05D006040 1.7e-63 246.9 182 64.8
Psat1g008120 Pisum sativum HOM05D005290 ORTHO05D006040 1.7e-63 246.9 183 62.3
CANSAT80G2649 Cannabis sativa HOM05D005290 ORTHO05D006040 2.2e-63 246.5 182 62.6
Carub.0006s2769 Capsella rubella HOM05D005290 ORTHO05D006040 2.2e-63 246.5 182 64.8
Lsat_1_v5_gn_1_31200 Lactuca sativa HOM05D005290 ORTHO05D006040 2.8e-63 246.1 182 64.3
Nitab4.5_0006434g0010 Nicotiana tabacum HOM05D005290 ORTHO05D006040 2.8e-63 246.1 182 62.6
SGA_v2.0_scaffold118G32566 Striga asiatica HOM05D005290 ORTHO05D006040 2.8e-63 246.1 185 62.7
SHI12388 Sapria himalayana HOM05D005290 ORTHO05D006040 3.7e-63 245.7 183 64.5
Atru.chr13.2376 Acer truncatum HOM05D005290 ORTHO05D006040 4.9e-63 245.4 186 61.8
BcaB01g02803 Brassica carinata HOM05D005290 ORTHO05D006040 4.9e-63 245.4 182 64.8
Sp6g08400 Schrenkiella parvula HOM05D005290 ORTHO05D006040 8.3e-63 244.6 182 64.3
Sopen04g017660 Solanum pennellii HOM05D005290 ORTHO05D006040 8.3e-63 244.6 182 62.6
CsaV3_6G002720 Cucumis sativus L. HOM05D005290 ORTHO05D006040 3.1e-62 242.7 178 62.9
HanXRQChr09g0266431 Helianthus annuus HOM05D005290 ORTHO05D006040 5.4e-62 241.9 182 64.3
PSO782G1799 Papaver somniferum HOM05D005290 ORTHO05D006040 7.0e-62 241.5 183 63.4
CARHR260140 Cardamine hirsuta HOM05D005290 ORTHO05D006040 9.2e-62 241.1 179 63.7
PSO170G3966 Papaver somniferum HOM05D005290 ORTHO05D006040 1.6e-61 240.4 183 63.4
Haze_21326 Corylus avellana HOM05D005290 ORTHO05D006040 2.0e-61 240.0 172 64.0
Lalb_Chr07g0189291 Lupinus albus HOM05D005290 ORTHO05D006040 2.0e-61 240.0 183 60.1
Solyc04g045660.4 Solanum lycopersicum HOM05D005290 ORTHO05D006040 2.0e-61 240.0 183 62.3
Cc10_g09470 Coffea canephora HOM05D005290 ORTHO05D006040 2.7e-61 239.6 189 60.3
Sed0025467 Sechium edule HOM05D005290 ORTHO05D006040 4.5e-61 238.8 183 60.7
Sed0005919 Sechium edule HOM05D005290 ORTHO05D006040 7.7e-61 238.0 183 61.2
Sed0027029 Sechium edule HOM05D005290 ORTHO05D006040 1.7e-60 236.9 183 60.1
Lj7C285G2 Lonicera japonica HOM05D005290 ORTHO05D006040 2.3e-60 236.5 196 61.2
MELO3C025009.2 Cucumis melo HOM05D005290 ORTHO05D006040 6.6e-60 235.0 178 62.4
Cpa.g.sc50.56 Carica papaya HOM05D005290 ORTHO05D006040 1.5e-59 233.8 173 63.6
FAN18G4563 Fragaria x ananassa HOM05D005290 ORTHO05D006040 1.2e-58 230.7 182 60.4
ATR1136G152 Amborella trichopoda HOM05D005290 ORTHO05D006040 1.6e-58 230.3 188 61.7
ECA232G1421 Erigeron canadensis HOM05D005290 ORTHO05D006040 8.0e-58 228.0 177 62.1
arahy.Tifrunner.gnm1.ann1.QF83TB Arachis hypogaea HOM05D005290 ORTHO05D006040 1.4e-57 227.3 169 61.5
EL10Ac1g00141 Beta vulgaris HOM05D005290 ORTHO05D006040 6.8e-57 224.9 185 60.5
arahy.Tifrunner.gnm1.ann1.0B02IH Arachis hypogaea HOM05D005290 ORTHO05D006040 3.4e-56 222.6 180 58.3
AUR62023548 Chenopodium quinoa HOM05D005290 ORTHO05D006040 4.4e-56 222.2 180 60.6
COL.COLO4_24646 Corchorus olitorius HOM05D005290 ORTHO05D006040 5.9e-53 211.8 171 57.9
Peaxi162Scf00076g10023 Petunia axillaris HOM05D005290 ORTHO05D006040 2.3e-52 209.9 153 64.7
Ca_13983_v3 Cicer arietinum L. HOM05D005290 ORTHO05D006040 3.0e-52 209.5 161 60.2
SEGI_07557 Sequoiadendron giganteum HOM05D005290 ORTHO05D006040 1.9e-51 206.8 174 54.6
Mapoly0086s0067 Marchantia polymorpha HOM05D005290 ORTHO05D006040 2.5e-51 206.5 214 49.1
Pp3c10_9000 Physcomitrium patens HOM05D005290 ORTHO05D006040 4.3e-51 205.7 183 56.8
AagrBONN_evm.TU.Sc2ySwM_344.4012 Anthoceros agrestis HOM05D005290 ORTHO05D006040 2.4e-46 189.9 203 48.3
Lalb_Chr18g0049141 Lupinus albus HOM05D005290 ORTHO05D006040 7.0e-46 188.3 179 49.7
PGR042G0738 Punica granatum HOM05D005290 ORTHO05D006040 2.8e-42 176.4 223 44.4
ClCG08G002450 Citrullus lanatus HOM05D005290 ORTHO05D006040 4.0e-41 172.6 125 61.6
TWI59G0173 Tripterygium wilfordii HOM05D005290 ORTHO05D006040 6.4e-39 165.2 229 42.4
CBR_g11107 Chara braunii HOM05D005290 ORTHO05D006040 2.1e-34 150.2 238 40.8
PGSC0003DMG402015043 Solanum tuberosum HOM05D005290 ORTHO05D006040 3.6e-34 149.4 98 67.3
SMO340G0005 Selaginella moellendorffii HOM05D005290 ORTHO05D006040 2.6e-32 143.3 159 46.5
Oeu006599.1 Olea europaea HOM05D005290 ORTHO05D006040 8.1e-26 121.7 100 57.0
CDE02G0285 Ceratophyllum demersum HOM05D005290 ORTHO05D006040 1.8e-25 120.6 86 61.6
PRCOL_00005034 Prasinoderma coloniale HOM05D005290 ORTHO05D006040 2.4e-22 110.2 179 36.3
PGSC0003DMG401015043 Solanum tuberosum HOM05D005290 ORTHO05D006040 1.0e-20 104.8 65 72.3
MCO16G484 Micromonas commoda HOM05D005290 ORTHO05D006040 1.3e-20 104.4 176 35.2
MD14G1034100 Malus domestica HOM05D005290 ORTHO05D006040 6.6e-20 102.1 64 70.3
CSS0016165 Camellia sinensis var. sinensis HOM05D005290 ORTHO05D006040 6.2e-18 95.5 92 48.9
Cfa009487 Carpinus fangiana HOM05D005290 ORTHO05D006040 1.1e-14 84.7 175 32.0
Cfa012974 Carpinus fangiana HOM05D005290 ORTHO05D006040 1.1e-14 84.7 58 67.2
CDE02G3660 Ceratophyllum demersum HOM05D005290 ORTHO05D006040 1.2e-13 81.3 58 65.5
ClCG08G002460 Citrullus lanatus HOM05D005290 ORTHO05D006040 4.6e-13 79.3 54 66.7
Cre01.g036050 Chlamydomonas reinhardtii HOM05D005290 ORTHO05D006040 6.7e-12 75.5 227 26.0


User provided reference genes

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