Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_002282 Vanilla planifolia HOM05D001486 ORTHO05D004921 0.0e+00 2861.6 1465 100.0
Os06g0305200 Oryza sativa ssp. japonica HOM05D001486 ORTHO05D004921 0.0e+00 1971.1 1480 67.8
Atru.chr11.925 Acer truncatum HOM05D001486 ORTHO05D004921 0.0e+00 1965.3 1482 68.9
QL03p035815 Quercus lobata HOM05D001486 ORTHO05D004921 0.0e+00 1958.0 1481 68.0
Thecc.02G292500 Theobroma cacao HOM05D001486 ORTHO05D004921 0.0e+00 1957.6 1479 68.2
CSS0037038 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 0.0e+00 1955.6 1477 68.0
Gohir.D02G139700 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 1942.9 1480 68.0
Potri.008G134800 Populus trichocarpa HOM05D001486 ORTHO05D004921 0.0e+00 1941.0 1484 67.2
Gorai.005G157100 Gossypium raimondii HOM05D001486 ORTHO05D004921 0.0e+00 1938.7 1480 67.8
Duzib268G0355 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 1938.3 1478 68.0
Actinidia36627 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 1934.8 1480 67.4
Lj3A864G85 Lonicera japonica HOM05D001486 ORTHO05D004921 0.0e+00 1930.2 1484 67.1
COL.COLO4_16588 Corchorus olitorius HOM05D001486 ORTHO05D004921 0.0e+00 1926.0 1478 67.1
Ciclev10014036m.g Citrus clementina HOM05D001486 ORTHO05D004921 0.0e+00 1923.7 1478 66.9
Manes.17G083900 Manihot esculenta HOM05D001486 ORTHO05D004921 0.0e+00 1922.9 1486 66.9
TWI74G0959 Tripterygium wilfordii HOM05D001486 ORTHO05D004921 0.0e+00 1917.5 1483 66.6
Nn4g24372 Nelumbo nucifera HOM05D001486 ORTHO05D004921 0.0e+00 1916.4 1430 68.3
Actinidia12394 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 1910.6 1480 66.8
MSTRG.2128 Avicennia marina HOM05D001486 ORTHO05D004921 0.0e+00 1909.8 1479 66.3
PGR142G2431 Punica granatum HOM05D001486 ORTHO05D004921 0.0e+00 1902.5 1484 66.6
Glyma.08G045900 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 1897.9 1481 66.4
Prupe.1G333300 Prunus persica HOM05D001486 ORTHO05D004921 0.0e+00 1897.5 1481 65.6
Aqoxy3G03310 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 1892.9 1475 65.9
arahy.Tifrunner.gnm1.ann1.FK3VI9 Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 1891.7 1480 65.9
arahy.Tifrunner.gnm1.ann1.WZE3XK Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 1891.7 1480 66.1
CANSAT01G0610 Cannabis sativa HOM05D001486 ORTHO05D004921 0.0e+00 1890.2 1481 65.7
Glyma.05G238800 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 1889.0 1482 65.7
VMungo0251G0466 Vigna mungo HOM05D001486 ORTHO05D004921 0.0e+00 1889.0 1481 65.2
Sabra08G0102800 Salix brachista HOM05D001486 ORTHO05D004921 0.0e+00 1885.5 1517 64.9
ATR0753G157 Amborella trichopoda HOM05D001486 ORTHO05D004921 0.0e+00 1883.2 1485 65.2
Duzib251G0538 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 1881.3 1481 66.4
Phvul.002G321200 Phaseolus vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 1880.5 1480 65.2
Eucgr.G02106 Eucalyptus grandis HOM05D001486 ORTHO05D004921 0.0e+00 1879.4 1485 65.9
TPR.G19252 Trifolium pratense HOM05D001486 ORTHO05D004921 0.0e+00 1878.6 1480 65.7
Aqoxy7G03241 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 1878.2 1475 65.6
vmacro10693 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 0.0e+00 1877.1 1529 64.5
Ca_17277_v3 Cicer arietinum L. HOM05D001486 ORTHO05D004921 0.0e+00 1876.3 1480 65.5
MD13G1020400 Malus domestica HOM05D001486 ORTHO05D004921 0.0e+00 1875.1 1473 65.9
CAN.G149.16 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 1872.4 1480 64.5
Psat7g007960 Pisum sativum HOM05D001486 ORTHO05D004921 0.0e+00 1869.7 1481 65.0
SGA_v2.0_scaffold23G10214 Striga asiatica HOM05D001486 ORTHO05D004921 0.0e+00 1867.0 1482 65.3
Lj4g0010019 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 1865.9 1479 65.2
SalBow2G2685 Salvia bowleyana HOM05D001486 ORTHO05D004921 0.0e+00 1865.1 1521 63.8
Cc04_g10510 Coffea canephora HOM05D001486 ORTHO05D004921 0.0e+00 1860.9 1476 65.2
Sopen07g004030 Solanum pennellii HOM05D001486 ORTHO05D004921 0.0e+00 1859.0 1477 64.3
PSO782G0822 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 1857.8 1473 64.6
Solyc07g008160.3 Solanum lycopersicum HOM05D001486 ORTHO05D004921 0.0e+00 1854.0 1477 64.2
FvH4_4g33560 Fragaria vesca HOM05D001486 ORTHO05D004921 0.0e+00 1852.4 1485 64.4
RcHm_v2.0_Chr4g0443061 Rosa chinensis HOM05D001486 ORTHO05D004921 0.0e+00 1851.3 1484 64.3
FAN22G2372 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 1848.6 1485 64.2
Medtr8g105290 Medicago truncatula HOM05D001486 ORTHO05D004921 0.0e+00 1847.8 1480 64.8
PSO063G3102 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 1847.8 1473 64.3
Zm00001eb009110 Zea mays HOM05D001486 ORTHO05D004921 0.0e+00 1847.0 1424 66.4
Migut.E00481 Erythranthe guttata HOM05D001486 ORTHO05D004921 0.0e+00 1844.3 1479 64.2
FAN12G0503 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 1843.9 1485 64.1
FAN07G1595 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 1843.6 1484 64.1
FAN17G1739 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 1839.7 1485 63.8
EL10Ac3g06288 Beta vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 1826.6 1477 63.7
Rhsim09G0089500 Rhododendron simsii HOM05D001486 ORTHO05D004921 0.0e+00 1825.4 1543 62.3
THA.LOC104823681 Tarenaya hassleriana HOM05D001486 ORTHO05D004921 0.0e+00 1825.1 1471 64.6
Lalb_Chr09g0330891 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 1820.4 1480 63.6
Hund13366 Selenicereus undatus HOM05D001486 ORTHO05D004921 0.0e+00 1818.9 1536 62.0
CARHR015390 Cardamine hirsuta HOM05D001486 ORTHO05D004921 0.0e+00 1817.7 1469 64.3
AT1G14850 Arabidopsis thaliana HOM05D001486 ORTHO05D004921 0.0e+00 1817.0 1468 64.4
Ah.13g072990 Amaranthus hybridus HOM05D001486 ORTHO05D004921 0.0e+00 1816.6 1476 63.6
Lalb_Chr05g0222211 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 1816.2 1471 64.0
AL1G26870 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 0.0e+00 1813.9 1469 64.5
DCAR_007329 Daucus carota HOM05D001486 ORTHO05D004921 0.0e+00 1811.2 1479 63.0
Carub.0001s1464 Capsella rubella HOM05D001486 ORTHO05D004921 0.0e+00 1809.7 1468 64.0
Thhalv10006562m.g Eutrema salsugineum HOM05D001486 ORTHO05D004921 0.0e+00 1807.7 1469 64.1
BcaB02g06554 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 1807.0 1469 64.3
Cpa.g.sc2.194 Carica papaya HOM05D001486 ORTHO05D004921 0.0e+00 1803.5 1481 63.7
BcaC05g25406 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 1802.7 1469 64.1
Sp1g13290 Schrenkiella parvula HOM05D001486 ORTHO05D004921 0.0e+00 1801.9 1468 63.8
Sed0010499 Sechium edule HOM05D001486 ORTHO05D004921 0.0e+00 1800.4 1482 62.9
BcaC07g41534 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 1798.9 1469 64.1
C05p12830 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 1797.3 1479 63.8
BolC5t30028H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 1794.6 1479 63.7
A09p61750 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 1794.2 1476 63.8
Oeu064208.1 Olea europaea HOM05D001486 ORTHO05D004921 0.0e+00 1791.9 1482 62.1
BolC8t52091H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 1791.5 1477 63.7
BraA09t41545Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 1789.6 1480 63.4
C08p45360 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 1786.5 1479 63.5
ClCG07G005610 Citrullus lanatus HOM05D001486 ORTHO05D004921 0.0e+00 1785.0 1480 62.2
BcaB08g34420 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 1783.1 1466 63.2
BraA06t24267Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 1782.7 1479 63.4
Sc11g0004180 Simmondsia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 1781.9 1479 62.5
HanXRQChr08g0212501 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 1780.8 1476 62.7
MELO3C026441.2 Cucumis melo HOM05D001486 ORTHO05D004921 0.0e+00 1778.1 1481 61.9
CsaV3_5G015740 Cucumis sativus L. HOM05D001486 ORTHO05D004921 0.0e+00 1762.7 1481 61.4
Lsat_1_v5_gn_8_46521 Lactuca sativa HOM05D001486 ORTHO05D004921 0.0e+00 1755.7 1471 62.5
ECA233G0786 Erigeron canadensis HOM05D001486 ORTHO05D004921 0.0e+00 1754.6 1464 62.8
Aa31LG1G260 Aethionema arabicum HOM05D001486 ORTHO05D004921 0.0e+00 1749.6 1451 63.2
AUR62002589 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 1748.8 1477 61.6
AUR62030013 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 1694.1 1571 57.9
Dinv10475 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 1677.1 1292 67.9
Gohir.A03G115400 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 1641.3 1290 67.1
Dinv07730 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 1637.1 1277 66.0
CiPaw.06G051900 Carya illinoinensis HOM05D001486 ORTHO05D004921 0.0e+00 1636.3 1294 66.8
CAN.G601.2 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 1590.1 1290 63.7
A06p10890 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 1589.7 1349 62.3
Haze_10881 Corylus avellana HOM05D001486 ORTHO05D004921 0.0e+00 1567.7 1579 55.7
Hma1.2p1_0705F.1_g206910 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1556.2 1207 66.9
Hma1.2p1_0277F.1_g111740 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1554.7 1375 61.4
HanXRQChr12g0363231 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 1530.0 1422 58.2
Mapoly0035s0137 Marchantia polymorpha HOM05D001486 ORTHO05D004921 0.0e+00 1526.1 1510 53.1
Peaxi162Scf00376g00816 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1498.0 1427 56.3
Pp3c8_3720 Physcomitrium patens HOM05D001486 ORTHO05D004921 0.0e+00 1496.1 1517 52.2
Zm00001eb399840 Zea mays HOM05D001486 ORTHO05D004921 0.0e+00 1468.0 1209 63.3
TAR629G0611 Trochodendron aralioides HOM05D001486 ORTHO05D004921 0.0e+00 1380.5 989 70.8
Peaxi162Scf01391g00116 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1282.7 1414 51.9
AagrBONN_evm.TU.Sc2ySwM_362.1455 Anthoceros agrestis HOM05D001486 ORTHO05D004921 0.0e+00 1251.9 1306 52.0
Lj1g0014898 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 1195.3 1079 60.0
Nitab4.5_0004576g0040 Nicotiana tabacum HOM05D001486 ORTHO05D004921 0.0e+00 1122.8 1359 48.0
Nitab4.5_0010421g0010 Nicotiana tabacum HOM05D001486 ORTHO05D004921 5.8e-310 1068.1 1359 46.5
SEGI_07920 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 2.4e-292 1009.6 845 60.2
Peaxi162Scf01152g00010 Petunia axillaris HOM05D001486 ORTHO05D004921 1.0e-282 977.6 1109 51.2
GSVIVG01011662001 Vitis vinifera HOM05D001486 ORTHO05D004921 4.7e-267 925.6 720 67.8
MD16G1018500 Malus domestica HOM05D001486 ORTHO05D004921 1.6e-259 900.6 747 61.8
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 2.7e-238 830.1 765 57.8
CDE06G1861 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 1.0e-237 828.2 578 70.6
unitig_27.g25159 Utricularia gibba HOM05D001486 ORTHO05D004921 2.5e-212 743.8 693 57.3
Peaxi162Scf01152g00113 Petunia axillaris HOM05D001486 ORTHO05D004921 5.6e-212 742.7 917 48.9
CDE06G1153 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 7.3e-196 689.1 599 61.3
unitig_27.g25160 Utricularia gibba HOM05D001486 ORTHO05D004921 5.8e-185 652.9 614 58.0
Carub.0127s0003 Capsella rubella HOM05D001486 ORTHO05D004921 1.8e-170 604.7 891 42.0
GSVIVG01011661001 Vitis vinifera HOM05D001486 ORTHO05D004921 2.8e-155 554.3 366 71.3
TAR629G0795 Trochodendron aralioides HOM05D001486 ORTHO05D004921 2.6e-145 521.2 423 65.2
AL1G32070 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 2.8e-139 501.1 474 55.9
ECA247G0951 Erigeron canadensis HOM05D001486 ORTHO05D004921 8.2e-139 499.6 741 41.8
MD16G1018600 Malus domestica HOM05D001486 ORTHO05D004921 1.0e-128 466.1 477 56.4
CDE07G1854 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 4.7e-118 430.6 765 37.3
RcHm_v2.0_Chr2g0167011 Rosa chinensis HOM05D001486 ORTHO05D004921 2.3e-117 428.3 563 45.8
CDE07G0203 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 2.0e-105 388.7 444 49.8
MCO15G435 Micromonas commoda HOM05D001486 ORTHO05D004921 7.1e-98 363.6 1764 24.8
PRCOL_00002396 Prasinoderma coloniale HOM05D001486 ORTHO05D004921 5.1e-88 330.9 1551 25.7
SEGI_12334 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 7.3e-87 327.0 365 51.8
Cre09.g394350 Chlamydomonas reinhardtii HOM05D001486 ORTHO05D004921 3.1e-85 321.6 1604 24.2
MD16G1018800 Malus domestica HOM05D001486 ORTHO05D004921 6.9e-77 293.9 201 71.1
SEGI_06977 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 6.0e-73 280.8 212 65.6
Zm00001eb255180 Zea mays HOM05D001486 ORTHO05D004921 6.9e-69 267.3 195 66.7
AL1G32080 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 3.9e-64 251.5 218 59.6
vmacro04889 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 6.7e-64 250.8 239 56.1
vmacro09906 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 3.2e-58 231.9 273 49.8
CAN.G601.1 Capsicum annuum HOM05D001486 ORTHO05D004921 1.2e-57 229.9 152 70.4
FvH4_1g18130 Fragaria vesca HOM05D001486 ORTHO05D004921 6.0e-57 227.6 155 66.5
Cfa024881 Carpinus fangiana HOM05D005623 ORTHO05D007130 1.6e-49 203.0 1338 23.6
Zm00001eb235300 Zea mays HOM05D001486 ORTHO05D004921 1.1e-42 180.3 127 66.1
Pp3c3_36410 Physcomitrium patens HOM05D001486 ORTHO05D004921 3.9e-40 171.8 188 50.5
SGA_v2.0_scaffold23G10209 Striga asiatica HOM05D001486 ORTHO05D004921 6.3e-38 164.5 102 77.5
CSS0012816 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 2.0e-36 159.5 185 49.7
CARHR227050 Cardamine hirsuta HOM05D001486 ORTHO05D004921 1.1e-34 153.7 155 52.9
Zm00001eb201400 Zea mays HOM05D001486 ORTHO05D004921 1.1e-31 143.7 113 63.7
RcHm_v2.0_Chr2g0167021 Rosa chinensis HOM05D001486 ORTHO05D004921 8.2e-30 137.5 212 44.8
AL2G18360 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 1.5e-26 126.7 337 31.8
BcaC09g49263 Brassica carinata HOM05D001486 ORTHO05D012131 6.7e-24 117.9 94 63.8
Rhsim12G0118300 Rhododendron simsii HOM05D001486 ORTHO05D004921 2.2e-22 112.8 100 60.0
BcaC01g04114 Brassica carinata HOM05D001486 ORTHO05D012131 8.2e-22 110.9 91 63.7
SEGI_12550 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 7.7e-20 104.4 78 62.8
ClCG01G015310 Citrullus lanatus HOM05D001486 ORTHO05D004921 1.7e-19 103.2 56 83.9
AL3G34910 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 3.4e-15 89.0 136 38.2
ClCG09G011850 Citrullus lanatus HOM05D004959 ORTHO05D005961 4.4e-15 88.6 67 59.7
Zm00001eb334690 Zea mays HOM05D001486 ORTHO05D037216 7.5e-15 87.8 54 81.5
GSVIVG01026805001 Vitis vinifera HOM05D001486 ORTHO05D004921 2.4e-13 82.8 68 58.8
GSVIVG01001572001 Vitis vinifera HOM05D001486 ORTHO05D004921 3.8e-11 75.5 110 43.6
SEGI_21189 Sequoiadendron giganteum HOM05D001486 ORTHO05D037216 9.4e-10 70.9 53 64.2
Hma1.2p1_0277F.1_g111730 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 1.2e-09 70.5 53 64.2
Hma1.2p1_0705F.1_g206905 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 1.2e-09 70.5 53 64.2
Os03g0223800 Oryza sativa ssp. japonica HOM05D001486 ORTHO05D037216 2.1e-09 69.7 57 64.9
SMO306G0002 Selaginella moellendorffii HOM05D065592 ORTHO05D004921 7.5e-07 61.2 146 28.8
SMO270G0006 Selaginella moellendorffii HOM05D065592 ORTHO05D004921 2.2e-06 59.7 146 28.8


User provided reference genes

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