Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_002026 Vanilla planifolia HOM05D004365 ORTHO05D005123 1.1e-65 253.1 115 100.0
Nn4g25611 Nelumbo nucifera HOM05D004365 ORTHO05D005123 1.9e-62 242.3 115 94.8
TAR365G0998 Trochodendron aralioides HOM05D004365 ORTHO05D005123 1.6e-61 239.2 115 92.2
Ah.13g072000 Amaranthus hybridus HOM05D004365 ORTHO05D005123 2.1e-61 238.8 115 92.2
DCAR_023347 Daucus carota HOM05D004365 ORTHO05D005123 2.1e-61 238.8 115 91.3
Aqoxy2G02775 Aquilegia oxysepala HOM05D004365 ORTHO05D005123 4.6e-61 237.7 115 92.2
CDE02G0371 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 4.6e-61 237.7 115 90.4
HanXRQChr05g0145921 Helianthus annuus HOM05D004365 ORTHO05D005123 4.6e-61 237.7 115 92.2
Sed0001961 Sechium edule HOM05D004365 ORTHO05D005123 4.6e-61 237.7 115 91.3
CiPaw.01G139700 Carya illinoinensis HOM05D004365 ORTHO05D005123 6.0e-61 237.3 115 91.3
CDE09G0896 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 6.0e-61 237.3 115 89.6
Sabra08G0080800 Salix brachista HOM05D004365 ORTHO05D005123 6.0e-61 237.3 115 89.6
CANSAT54G2312 Cannabis sativa HOM05D004365 ORTHO05D005123 1.0e-60 236.5 115 90.4
Haze_01277 Corylus avellana HOM05D004365 ORTHO05D005123 1.0e-60 236.5 115 91.3
ECA246G3323 Erigeron canadensis HOM05D004365 ORTHO05D005123 1.0e-60 236.5 115 91.3
QL06p011635 Quercus lobata HOM05D004365 ORTHO05D005123 1.0e-60 236.5 114 91.2
PSO761G0124 Papaver somniferum HOM05D004365 ORTHO05D005123 1.3e-60 236.1 115 89.6
Potri.008G106900 Populus trichocarpa HOM05D004365 ORTHO05D005123 1.3e-60 236.1 115 88.7
Sed0006030 Sechium edule HOM05D004365 ORTHO05D005123 1.3e-60 236.1 115 90.4
Sc05g0009630 Simmondsia chinensis HOM05D004365 ORTHO05D005123 1.3e-60 236.1 115 91.3
GSVIVG01035016001 Vitis vinifera HOM05D004365 ORTHO05D005123 1.3e-60 236.1 115 91.3
CSS0008168 Camellia sinensis var. sinensis HOM05D004365 ORTHO05D005123 1.7e-60 235.7 115 91.3
MSTRG.21775 Avicennia marina HOM05D004365 ORTHO05D005123 2.3e-60 235.3 115 92.2
ClCG05G006460 Citrullus lanatus HOM05D004365 ORTHO05D005123 2.3e-60 235.3 115 89.6
Hma1.2p1_0013F.1_g008720 Hydrangea macrophylla HOM05D004365 ORTHO05D005123 2.3e-60 235.3 115 91.3
Prupe.1G122000 Prunus persica HOM05D004365 ORTHO05D005123 3.0e-60 235.0 115 89.6
PGR004G2507 Punica granatum HOM05D004365 ORTHO05D005123 3.9e-60 234.6 115 91.3
Actinidia13364 Actinidia chinensis HOM05D004365 ORTHO05D005123 5.1e-60 234.2 115 91.3
Ciclev10006256m.g Citrus clementina HOM05D004365 ORTHO05D005123 5.1e-60 234.2 115 89.6
PSO210G6722 Papaver somniferum HOM05D004365 ORTHO05D005123 5.1e-60 234.2 115 88.7
Lsat_1_v5_gn_6_116841 Lactuca sativa HOM05D004365 ORTHO05D005123 6.6e-60 233.8 115 88.7
RcHm_v2.0_Chr4g0424591 Rosa chinensis HOM05D004365 ORTHO05D005123 6.6e-60 233.8 115 89.6
Oeu016485.1 Olea europaea HOM05D004365 ORTHO05D005123 8.6e-60 233.4 115 90.4
Manes.15G005400 Manihot esculenta HOM05D004365 ORTHO05D005123 1.1e-59 233.0 115 87.8
Duzib052G0793 Durio zibethinus HOM05D004365 ORTHO05D005123 1.9e-59 232.3 115 89.6
Eucgr.H02666 Eucalyptus grandis HOM05D004365 ORTHO05D005123 1.9e-59 232.3 115 89.6
Lalb_Chr18g0058831 Lupinus albus HOM05D004365 ORTHO05D005123 1.9e-59 232.3 115 87.8
MD13G1156200 Malus domestica HOM05D004365 ORTHO05D005123 1.9e-59 232.3 115 88.7
unitig_22.g6354 Utricularia gibba HOM05D004365 ORTHO05D005123 1.9e-59 232.3 115 89.6
Lj6g0010863 Lotus japonicus HOM05D004365 ORTHO05D005123 2.5e-59 231.9 115 88.7
Phvul.009G256100 Phaseolus vulgaris HOM05D004365 ORTHO05D005123 3.3e-59 231.5 115 89.6
Cc03_g00970 Coffea canephora HOM05D004365 ORTHO05D005123 4.3e-59 231.1 115 89.6
FvH4_4g19480 Fragaria vesca HOM05D004365 ORTHO05D005123 4.3e-59 231.1 115 88.7
FAN07G2773 Fragaria x ananassa HOM05D004365 ORTHO05D005123 4.3e-59 231.1 115 88.7
Sabra10G0110500 Salix brachista HOM05D004365 ORTHO05D005123 5.6e-59 230.7 115 87.0
Glyma.09G037400 Glycine max HOM05D004365 ORTHO05D005123 7.3e-59 230.3 115 87.8
Thecc.04G297700 Theobroma cacao HOM05D004365 ORTHO05D005123 7.3e-59 230.3 115 88.7
TWI73G0828 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 7.3e-59 230.3 115 87.8
MD16G1157100 Malus domestica HOM05D004365 ORTHO05D005123 9.6e-59 229.9 115 87.8
Medtr2g034520 Medicago truncatula HOM05D004365 ORTHO05D005123 9.6e-59 229.9 115 88.7
Nitab4.5_0000647g0090 Nicotiana tabacum HOM05D004365 ORTHO05D005123 9.6e-59 229.9 115 89.6
Peaxi162Scf00164g01133 Petunia axillaris HOM05D004365 ORTHO05D005123 9.6e-59 229.9 115 89.6
Solyc05g053430.3 Solanum lycopersicum HOM05D004365 ORTHO05D005123 9.6e-59 229.9 115 89.6
Sopen05g031930 Solanum pennellii HOM05D004365 ORTHO05D005123 9.6e-59 229.9 115 89.6
PGSC0003DMG400027213 Solanum tuberosum HOM05D004365 ORTHO05D005123 9.6e-59 229.9 115 89.6
SEGI_37796 Sequoiadendron giganteum HOM05D004365 ORTHO05D005123 1.2e-58 229.6 115 87.8
Ca_01870_v3 Cicer arietinum L. HOM05D004365 ORTHO05D005123 1.6e-58 229.2 115 87.8
Gohir.A01G034300 Gossypium hirsutum HOM05D004365 ORTHO05D005123 1.6e-58 229.2 115 87.8
Gohir.D01G023535 Gossypium hirsutum HOM05D004365 ORTHO05D005123 1.6e-58 229.2 115 87.8
Gorai.002G030000 Gossypium raimondii HOM05D004365 ORTHO05D005123 1.6e-58 229.2 115 87.8
Psat6g078760 Pisum sativum HOM05D004365 ORTHO05D005123 2.1e-58 228.8 115 88.7
SMO174G0170 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 2.1e-58 228.8 114 87.7
Duzib212G0477 Durio zibethinus HOM05D004365 ORTHO05D005123 2.8e-58 228.4 115 87.8
AL3G29960 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 3.6e-58 228.0 115 86.1
TPR.G5757 Trifolium pratense HOM05D004365 ORTHO05D005123 3.6e-58 228.0 115 87.8
Carub.0003s1673 Capsella rubella HOM05D004365 ORTHO05D005123 4.7e-58 227.6 115 86.1
AT3G16980 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 1.1e-57 226.5 115 85.2
THA.LOC104820300 Tarenaya hassleriana HOM05D004365 ORTHO05D005123 1.1e-57 226.5 115 85.2
Glyma.15G142700 Glycine max HOM05D004365 ORTHO05D005123 1.4e-57 226.1 115 87.0
BcaB08g34342 Brassica carinata HOM05D004365 ORTHO05D005123 1.8e-57 225.7 115 84.3
BcaC07g37975 Brassica carinata HOM05D004365 ORTHO05D005123 1.8e-57 225.7 115 84.3
A08p12300 Brassica napus HOM05D004365 ORTHO05D005123 1.8e-57 225.7 115 84.3
BolC8t48354H Brassica oleracea HOM05D004365 ORTHO05D005123 1.8e-57 225.7 115 84.3
Dinv44302 Davidia involucrata HOM05D004365 ORTHO05D005123 1.8e-57 225.7 115 87.8
Aa31LG8G4020 Aethionema arabicum HOM05D004365 ORTHO05D005123 3.1e-57 224.9 115 84.3
BcaC09g50324 Brassica carinata HOM05D004365 ORTHO05D005123 3.1e-57 224.9 115 84.3
BcaNung00211 Brassica carinata HOM05D004365 ORTHO05D005123 3.1e-57 224.9 115 84.3
A01p21300 Brassica napus HOM05D004365 ORTHO05D005123 3.1e-57 224.9 115 84.3
Cpa.g.sc9.86 Carica papaya HOM05D004365 ORTHO05D005123 3.1e-57 224.9 115 85.2
Thhalv10021989m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 4.0e-57 224.6 115 84.3
Mapoly0028s0097 Marchantia polymorpha HOM05D004365 ORTHO05D005123 4.0e-57 224.6 115 87.0
vmacro15189 Vaccinium macrocarpon HOM05D004365 ORTHO05D005123 4.0e-57 224.6 135 78.5
AL7G38770 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 1.5e-56 222.6 115 83.5
AT4G16265 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 1.5e-56 222.6 115 83.5
Carub.0007s2525 Capsella rubella HOM05D004365 ORTHO05D005123 1.5e-56 222.6 115 83.5
SMO364G0316 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 2.6e-56 221.9 115 83.5
Thhalv10026603m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 5.8e-56 220.7 115 82.6
Pp3c18_17910 Physcomitrium patens HOM05D004365 ORTHO05D005123 1.7e-55 219.2 115 82.6
CARHR092230 Cardamine hirsuta HOM05D004365 ORTHO05D005123 2.9e-55 218.4 115 83.5
CARHR222650 Cardamine hirsuta HOM05D004365 ORTHO05D005123 2.9e-55 218.4 115 80.9
Nitab4.5_0006365g0010 Nicotiana tabacum HOM05D004365 ORTHO05D005123 2.9e-55 218.4 134 76.9
TWI09G0163 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 6.4e-55 217.2 115 83.5
Hund03115 Selenicereus undatus HOM05D004365 ORTHO05D005123 3.2e-54 214.9 105 92.4
Hund11961 Selenicereus undatus HOM05D004365 ORTHO05D005123 3.2e-54 214.9 105 92.4
arahy.Tifrunner.gnm1.ann1.79Y4XM Arachis hypogaea HOM05D004365 ORTHO05D005123 5.4e-54 214.2 112 84.8
arahy.Tifrunner.gnm1.ann1.C4ZZV2 Arachis hypogaea HOM05D004365 ORTHO05D005123 5.4e-54 214.2 112 84.8
Zm00001eb088460 Zea mays HOM05D004365 ORTHO05D005123 7.1e-54 213.8 115 78.3
EL10Ac3g05464 Beta vulgaris HOM05D004365 ORTHO05D005123 2.7e-53 211.8 115 83.5
Migut.N00047 Erythranthe guttata HOM05D004365 ORTHO05D005123 2.7e-53 211.8 105 89.5
A09p28560 Brassica napus HOM05D004365 ORTHO05D005123 3.5e-53 211.5 113 80.5
BraA09t38417Z Brassica rapa HOM05D004365 ORTHO05D005123 3.5e-53 211.5 113 80.5
Os03g0102200 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 3.9e-52 208.0 115 77.4
Os12g0560400 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 1.9e-51 205.7 105 86.7
arahy.Tifrunner.gnm1.ann1.MX4EIU Arachis hypogaea HOM05D004365 ORTHO05D005123 2.5e-51 205.3 114 78.9
HPP92_005120 Vanilla planifolia HOM05D004365 ORTHO05D005123 7.3e-51 203.8 114 74.6
BraA08t33228Z Brassica rapa HOM05D004365 ORTHO05D005123 9.6e-51 203.4 105 82.9
Lalb_Chr08g0234431 Lupinus albus HOM05D004365 ORTHO05D005123 1.3e-50 203.0 112 81.2
BcaC04g21057 Brassica carinata HOM05D004365 ORTHO05D005123 1.6e-50 202.6 112 76.8
BolC1t02605H Brassica oleracea HOM05D004365 ORTHO05D005123 1.6e-50 202.6 105 82.9
SalBow2G2782 Salvia bowleyana HOM05D004365 ORTHO05D005123 1.6e-50 202.6 128 75.8
C09p36150 Brassica napus HOM05D004365 ORTHO05D005123 2.1e-50 202.2 112 76.8
BolC9t56454H Brassica oleracea HOM05D004365 ORTHO05D005123 2.1e-50 202.2 112 76.8
Manes.03G202800 Manihot esculenta HOM05D004365 ORTHO05D005123 6.2e-50 200.7 115 76.5
SpUn0413_0020 Schrenkiella parvula HOM05D004365 ORTHO05D005123 8.1e-50 200.3 105 81.9
Lj4g0028172 Lotus japonicus HOM05D004365 ORTHO05D005123 1.4e-49 199.5 115 75.7
Glyma.07G241200 Glycine max HOM05D004365 ORTHO05D005123 4.0e-49 198.0 115 73.0
Dinv15193 Davidia involucrata HOM05D004365 ORTHO05D005123 4.4e-48 194.5 98 90.8
Phvul.003G112600 Phaseolus vulgaris HOM05D004365 ORTHO05D005123 2.9e-47 191.8 115 70.4
TWI53G1753 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 2.4e-46 188.7 114 71.9
Sp7g14780 Schrenkiella parvula HOM05D004365 ORTHO05D005123 3.5e-45 184.9 130 65.4
VMungo1215G2752 Vigna mungo HOM05D004365 ORTHO05D005123 1.7e-44 182.6 115 67.8
Mapoly0087s0071 Marchantia polymorpha HOM05D004365 ORTHO05D005123 2.3e-44 182.2 115 70.4
TWI53G0542 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 3.9e-44 181.4 114 69.3
DCAR_027008 Daucus carota HOM05D004365 ORTHO05D005123 2.5e-43 178.7 180 53.3
VMungo1309G0143 Vigna mungo HOM05D004365 ORTHO05D005123 1.6e-42 176.0 88 90.9
Sabra10G0110300 Salix brachista HOM05D004365 ORTHO05D005123 3.6e-42 174.9 115 70.4
ATR0665G356 Amborella trichopoda HOM05D004365 ORTHO05D005123 8.1e-42 173.7 88 89.8
Os07g0615800 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 1.8e-41 172.6 115 60.9
arahy.Tifrunner.gnm1.ann1.2XVX11 Arachis hypogaea HOM05D004365 ORTHO05D005123 1.5e-40 169.5 114 68.4
AUR62041403 Chenopodium quinoa HOM05D004365 ORTHO05D005123 2.6e-40 168.7 93 82.8
AUR62016130 Chenopodium quinoa HOM05D004365 ORTHO05D005123 6.4e-39 164.1 80 91.2
TPR.G10905 Trifolium pratense HOM05D004365 ORTHO05D005123 6.4e-39 164.1 88 84.1
Rhsim02G0004900 Rhododendron simsii HOM05D004365 ORTHO05D005123 5.5e-38 161.0 90 81.1
SGA_v2.0_scaffold119G32662 Striga asiatica HOM05D004365 ORTHO05D005123 5.5e-38 161.0 84 86.9
FAN12G3053 Fragaria x ananassa HOM05D004365 ORTHO05D005123 3.5e-37 158.3 80 86.2
FvH4_3g15650 Fragaria vesca HOM05D004365 ORTHO05D005123 2.3e-36 155.6 80 83.8
Potri.010G142500 Populus trichocarpa HOM05D004365 ORTHO05D005123 3.0e-36 155.2 94 75.5
FAN12G1077 Fragaria x ananassa HOM05D004365 ORTHO05D005123 8.7e-36 153.7 82 81.7
Atru.chr4.3028 Acer truncatum HOM05D004365 ORTHO05D005123 1.1e-35 153.3 79 83.5
BcaB04g18375 Brassica carinata HOM05D004365 ORTHO05D005123 2.5e-35 152.1 80 80.0
BraA01t02037Z Brassica rapa HOM05D004365 ORTHO05D005123 2.5e-35 152.1 81 79.0
COL.COLO4_34649 Corchorus olitorius HOM05D001765 ORTHO05D005123 3.3e-35 151.8 77 90.9
Eucgr.H02672 Eucalyptus grandis HOM05D004365 ORTHO05D005123 7.4e-35 150.6 84 81.0
Zm00001eb086380 Zea mays HOM05D004365 ORTHO05D005123 6.2e-34 147.5 80 78.8
Zm00001eb138580 Zea mays HOM05D004365 ORTHO05D005123 1.1e-33 146.7 81 76.5
Zm00001eb230190 Zea mays HOM05D004365 ORTHO05D005123 5.3e-33 144.4 81 77.8
Haze_26633 Corylus avellana HOM05D004365 ORTHO05D005123 1.2e-32 143.3 110 57.3
MCO01G087 Micromonas commoda HOM05D004365 ORTHO05D005123 3.5e-29 131.7 111 51.4
AL7G38230 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 6.9e-25 117.5 61 80.3
Zm00001eb327460 Zea mays HOM05D004365 ORTHO05D005123 1.5e-24 116.3 97 53.6
Zm00001eb270680 Zea mays HOM05D004365 ORTHO05D005123 1.3e-23 113.2 64 78.1
Cre12.g505750 Chlamydomonas reinhardtii HOM05D004365 ORTHO05D005123 3.2e-22 108.6 113 46.9
AagrBONN_evm.TU.Sc2ySwM_117.3306 Anthoceros agrestis HOM05D004365 ORTHO05D005123 3.5e-21 105.1 114 44.7
Hma1.2p1_0096F.1_g047650 Hydrangea macrophylla HOM05D004365 ORTHO05D005123 1.3e-20 103.2 56 83.9
SHI00177 Sapria himalayana HOM05D004365 ORTHO05D005123 1.8e-20 102.8 71 64.8
PRCOL_00000204 Prasinoderma coloniale HOM05D004365 ORTHO05D005123 8.7e-20 100.5 113 46.0
Zm00001eb137030 Zea mays HOM05D004365 ORTHO05D005123 2.2e-18 95.9 54 81.5
BcaB01g01499 Brassica carinata HOM05D004365 ORTHO05D005123 4.8e-18 94.7 49 81.6
Cfa024902 Carpinus fangiana HOM05D004365 ORTHO05D005123 3.4e-16 88.6 64 53.1
Hma1.2p1_0234F.1_g098400 Hydrangea macrophylla HOM05D001088 ORTHO05D005123 2.2e-15 85.9 64 67.2
Mapoly0020s0069 Marchantia polymorpha HOM05D004365 ORTHO05D005123 8.5e-15 84.0 117 35.9
SMO304G0059 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 1.4e-12 76.6 104 39.4
AagrBONN_evm.TU.Sc2ySwM_344.170 Anthoceros agrestis HOM05D001942 ORTHO05D001996 1.7e-10 69.7 105 35.2
Os11g0676650 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 1.4e-09 66.6 40 75.0
Pp3c15_5550 Physcomitrium patens HOM05D006029 ORTHO05D007439 4.5e-08 61.6 112 33.0
EL10Ac5g10924 Beta vulgaris HOM05D006029 ORTHO05D007439 1.7e-07 59.7 113 27.4
Hund17067 Selenicereus undatus HOM05D006029 ORTHO05D007439 8.5e-07 57.4 115 28.7
Sc02g0002910 Simmondsia chinensis HOM05D006029 ORTHO05D007439 1.4e-06 56.6 113 29.2
PGR102G2016 Punica granatum HOM05D006029 ORTHO05D007439 3.2e-06 55.5 112 25.9


User provided reference genes

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