Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.009G324500 Gossypium raimondii HOM05D001988 ORTHO05D004985 0.0e+00 1492.2 730 100.0
Gohir.D05G304800 Gossypium hirsutum HOM05D001988 ORTHO05D004985 0.0e+00 1486.9 730 99.7
Gohir.A05G183600 Gossypium hirsutum HOM05D001988 ORTHO05D004985 0.0e+00 1385.2 731 93.6
Duzib251G0871 Durio zibethinus HOM05D001988 ORTHO05D004985 0.0e+00 1174.1 736 78.7
Thecc.02G346500 Theobroma cacao HOM05D001988 ORTHO05D004985 0.0e+00 1106.7 736 75.8
Cfa008981 Carpinus fangiana HOM05D001988 ORTHO05D004985 2.5e-205 719.5 739 52.5
Manes.01G185700 Manihot esculenta HOM05D001988 ORTHO05D004985 7.3e-205 718.0 759 52.3
Eucgr.B03445 Eucalyptus grandis HOM05D001988 ORTHO05D004985 2.9e-201 706.1 735 51.4
Actinidia19875 Actinidia chinensis HOM05D001988 ORTHO05D004985 3.2e-200 702.6 739 52.5
QL03p063402 Quercus lobata HOM05D001988 ORTHO05D004985 4.2e-200 702.2 745 51.9
QL03p064038 Quercus lobata HOM05D001988 ORTHO05D004985 4.2e-200 702.2 745 51.9
Cpa.g.sc128.24 Carica papaya HOM05D001988 ORTHO05D004985 7.9e-199 698.0 740 50.8
Ciclev10030768m.g Citrus clementina HOM05D001988 ORTHO05D004985 1.9e-197 693.3 776 50.5
Rhsim12G0063800 Rhododendron simsii HOM05D001988 ORTHO05D004985 1.1e-192 677.6 742 50.5
Haze_12013 Corylus avellana HOM05D001988 ORTHO05D004985 1.8e-190 670.2 870 44.9
CANSAT54G1389 Cannabis sativa HOM05D001988 ORTHO05D004985 3.9e-190 669.1 747 48.3
Prupe.1G174900 Prunus persica HOM05D001988 ORTHO05D004985 2.5e-189 666.4 747 50.2
Glyma.11G111300 Glycine max HOM05D001988 ORTHO05D004985 2.4e-187 659.8 752 48.8
Phvul.011G039300 Phaseolus vulgaris HOM05D001988 ORTHO05D004985 4.0e-187 659.1 738 49.5
CSS0030030 Camellia sinensis var. sinensis HOM05D001988 ORTHO05D004985 5.3e-187 658.7 738 49.7
MD04G1025400 Malus domestica HOM05D001988 ORTHO05D004985 3.4e-186 656.0 711 50.8
ClCG11G010950 Citrullus lanatus HOM05D001988 ORTHO05D004985 4.6e-183 645.6 746 48.5
MELO3C008752.2 Cucumis melo HOM05D001988 ORTHO05D004985 7.9e-183 644.8 761 48.2
VMungo1127G0715 Vigna mungo HOM05D001988 ORTHO05D004985 7.9e-183 644.8 744 47.7
GSVIVG01019982001 Vitis vinifera HOM05D001988 ORTHO05D004985 1.5e-181 640.6 727 48.7
vmacro01260 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 1.9e-181 640.2 742 48.4
PGR102G2417 Punica granatum HOM05D001988 ORTHO05D004985 4.3e-181 639.0 737 50.1
COL.COLO4_23013 Corchorus olitorius HOM05D001988 ORTHO05D004985 8.2e-180 634.8 737 49.5
Sabra10G0129300 Salix brachista HOM05D001988 ORTHO05D004985 1.8e-179 633.6 745 48.6
Lj3g0010541 Lotus japonicus HOM05D001988 ORTHO05D004985 5.9e-178 628.6 739 47.6
Sed0003814 Sechium edule HOM05D001988 ORTHO05D004985 1.4e-176 624.0 747 47.8
FAN21G2649 Fragaria x ananassa HOM05D001988 ORTHO05D004985 1.6e-175 620.5 760 48.2
Lj8A318G47 Lonicera japonica HOM05D001988 ORTHO05D004985 6.1e-175 618.6 715 49.4
vmacro01166 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 3.0e-174 616.3 745 48.5
FAN25G3604 Fragaria x ananassa HOM05D001988 ORTHO05D006298 5.1e-174 615.5 761 48.1
CiPaw.05G135300 Carya illinoinensis HOM05D001988 ORTHO05D004985 1.5e-173 614.0 609 54.4
FvH4_3g26291 Fragaria vesca HOM05D001988 ORTHO05D004985 1.9e-173 613.6 760 48.0
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 1.3e-172 610.9 760 47.9
Ca_20931_v3 Cicer arietinum L. HOM05D001988 ORTHO05D004985 2.8e-172 609.8 751 46.2
TWI53G0339 Tripterygium wilfordii HOM05D001988 ORTHO05D004985 2.8e-172 609.8 717 48.7
Lalb_Chr14g0368981 Lupinus albus HOM05D001988 ORTHO05D004985 1.1e-168 597.8 714 47.8
Nitab4.5_0007649g0010 Nicotiana tabacum HOM05D001988 ORTHO05D004985 1.6e-167 594.0 720 46.2
Medtr4g057650 Medicago truncatula HOM05D001988 ORTHO05D004985 1.4e-166 590.9 742 45.6
Nn4g23157 Nelumbo nucifera HOM05D001988 ORTHO05D004985 6.7e-166 588.6 777 45.6
THA.LOC104805159 Tarenaya hassleriana HOM05D001988 ORTHO05D004985 9.7e-165 584.7 747 44.4
Peaxi162Scf00217g00713 Petunia axillaris HOM05D001988 ORTHO05D004985 2.2e-164 583.6 723 47.0
Psat7g139200 Pisum sativum HOM05D001988 ORTHO05D004985 1.4e-163 580.9 738 45.3
Nitab4.5_0000428g0180 Nicotiana tabacum HOM05D001988 ORTHO05D004985 2.4e-163 580.1 715 46.2
Lsat_1_v5_gn_5_156781 Lactuca sativa HOM05D001988 ORTHO05D004985 4.1e-163 579.3 731 47.1
Lsat_1_v5_gn_8_100701 Lactuca sativa HOM05D001988 ORTHO05D004985 9.1e-163 578.2 715 48.0
Cc09_g03970 Coffea canephora HOM05D001988 ORTHO05D004985 1.2e-162 577.8 711 46.0
arahy.Tifrunner.gnm1.ann1.41IR6N Arachis hypogaea HOM05D001988 ORTHO05D004985 2.6e-162 576.6 761 44.3
arahy.Tifrunner.gnm1.ann1.8UN484 Arachis hypogaea HOM05D001988 ORTHO05D004985 8.5e-161 571.6 758 44.2
HanXRQChr05g0145521 Helianthus annuus HOM05D001988 ORTHO05D004985 1.9e-160 570.5 726 45.5
arahy.Tifrunner.gnm1.ann1.AY0VQT Arachis hypogaea HOM05D001988 ORTHO05D004985 5.5e-160 568.9 758 44.2
TPR.G27077 Trifolium pratense HOM05D001988 ORTHO05D004985 7.2e-160 568.5 720 45.4
HanXRQChr09g0255131 Helianthus annuus HOM05D001988 ORTHO05D004985 2.7e-159 566.6 719 45.3
FAN25G3456 Fragaria x ananassa HOM05D001988 ORTHO05D004985 4.7e-159 565.8 730 47.4
Hund05880 Selenicereus undatus HOM05D001988 ORTHO05D004985 7.4e-157 558.5 735 44.4
EL10Ac6g13205 Beta vulgaris HOM05D001988 ORTHO05D004985 1.7e-156 557.4 751 44.5
ECA248G0899 Erigeron canadensis HOM05D001988 ORTHO05D004985 2.2e-156 557.0 733 44.1
Solyc11g071540.2 Solanum lycopersicum HOM05D001988 ORTHO05D004985 8.2e-156 555.1 704 46.3
Medtr4g071660 Medicago truncatula HOM05D001988 ORTHO05D004985 4.1e-155 552.7 724 44.3
PGSC0003DMG401018705 Solanum tuberosum HOM05D001988 ORTHO05D004985 1.2e-154 551.2 705 45.7
CsaV3_2G009530 Cucumis sativus L. HOM05D001988 ORTHO05D004985 5.9e-154 548.9 643 47.9
AUR62005788 Chenopodium quinoa HOM05D001988 ORTHO05D004985 7.7e-154 548.5 745 43.0
EL10Ac9g22126 Beta vulgaris HOM05D001988 ORTHO05D004985 2.2e-153 547.0 788 42.5
Sopen11g029230 Solanum pennellii HOM05D001988 ORTHO05D004985 3.8e-153 546.2 704 45.9
MSTRG.27418 Avicennia marina HOM05D001988 ORTHO05D004985 1.9e-152 543.9 719 43.9
CAN.G439.30 Capsicum annuum HOM05D001988 ORTHO05D004985 6.1e-151 538.9 706 45.8
Lsat_1_v5_gn_4_55321 Lactuca sativa HOM05D001988 ORTHO05D004985 2.0e-149 533.9 731 44.6
SHI13475 Sapria himalayana HOM05D001988 ORTHO05D004985 4.8e-148 529.3 700 45.1
Aa31LG2G7390 Aethionema arabicum HOM05D001988 ORTHO05D004985 2.4e-147 526.9 744 42.9
Migut.F02100 Erythranthe guttata HOM05D001988 ORTHO05D004985 9.1e-147 525.0 718 42.1
Sc11g0001930 Simmondsia chinensis HOM05D001988 ORTHO05D004985 4.2e-144 516.2 750 41.2
Ah.05g179340 Amaranthus hybridus HOM05D001988 ORTHO05D004985 8.8e-142 508.4 754 41.9
DCAR_007151 Daucus carota HOM05D001988 ORTHO05D004985 2.6e-141 506.9 725 41.0
ECA234G0637 Erigeron canadensis HOM05D001988 ORTHO05D004985 7.5e-141 505.4 720 41.8
SalBow1G3615 Salvia bowleyana HOM05D001988 ORTHO05D004985 4.1e-139 499.6 698 43.7
TPR.G16225 Trifolium pratense HOM05D001988 ORTHO05D004985 2.0e-138 497.3 722 40.7
Dinv16646 Davidia involucrata HOM05D001988 ORTHO05D004985 2.7e-138 496.9 421 60.3
Solyc09g007120.4 Solanum lycopersicum HOM05D001988 ORTHO05D004985 3.5e-138 496.5 707 42.6
Sopen09g001990 Solanum pennellii HOM05D001988 ORTHO05D004985 2.9e-137 493.4 704 43.2
SGA_v2.0_scaffold58G20462 Striga asiatica HOM05D001988 ORTHO05D004985 5.0e-137 492.7 705 41.3
AL5G12570 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 5.5e-136 489.2 722 43.5
Carub.0005s0183 Capsella rubella HOM05D001988 ORTHO05D004985 7.2e-136 488.8 729 43.2
TAR629G1399 Trochodendron aralioides HOM05D001988 ORTHO05D004985 1.4e-134 484.6 541 51.0
AT2G02955 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 4.0e-134 483.0 707 42.7
AUR62028773 Chenopodium quinoa HOM05D001988 ORTHO05D004985 2.0e-133 480.7 689 41.9
RcHm_v2.0_Chr5g0048641 Rosa chinensis HOM05D001988 ORTHO05D004985 9.2e-131 471.9 541 49.7
RcHm_v2.0_Chr7g0220021 Rosa chinensis HOM05D001988 ORTHO05D004985 1.1e-128 464.9 542 48.9
Thhalv10027666m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 5.6e-128 462.6 718 41.6
Aqoxy1G01101 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 3.6e-127 459.9 730 39.0
Hma1.2p1_0265F.1_g106750 Hydrangea macrophylla HOM05D001988 ORTHO05D004985 1.4e-126 458.0 398 56.5
C08p52490 Brassica napus HOM05D001988 ORTHO05D004985 2.2e-124 450.7 736 40.8
Medtr5g067430 Medicago truncatula HOM05D001988 ORTHO05D004985 2.9e-124 450.3 705 39.9
BcaC07g42212 Brassica carinata HOM05D001988 ORTHO05D004985 5.4e-123 446.0 720 40.0
Sp7g05500 Schrenkiella parvula HOM05D001988 ORTHO05D004985 2.0e-122 444.1 724 39.9
A09p68050 Brassica napus HOM05D001988 ORTHO05D004985 3.0e-121 440.3 731 39.9
BolC8t52776H Brassica oleracea HOM05D001988 ORTHO05D004985 3.0e-121 440.3 736 40.1
BraA09t42140Z Brassica rapa HOM05D001988 ORTHO05D004985 1.1e-120 438.3 729 39.4
Migut.I00421 Erythranthe guttata HOM05D001988 ORTHO05D004985 1.1e-120 438.3 728 37.4
unitig_60.g25620 Utricularia gibba HOM05D001988 ORTHO05D004985 2.5e-120 437.2 672 39.7
CDE07G0941 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 4.7e-119 433.0 585 43.8
AL6G52060 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 1.0e-113 415.2 697 38.6
PSO017G3571 Papaver somniferum HOM05D001988 ORTHO05D004985 4.3e-112 409.8 696 36.9
PSO063G4641 Papaver somniferum HOM05D001988 ORTHO05D004985 1.4e-110 404.8 677 37.4
HPP92_021577 Vanilla planifolia HOM05D001988 ORTHO05D004985 4.0e-110 403.3 720 36.9
Oeu037938.2 Olea europaea HOM05D001988 ORTHO05D004985 8.9e-110 402.1 529 44.6
Eucgr.B03444 Eucalyptus grandis HOM05D001988 ORTHO05D004985 1.6e-106 391.3 486 47.3
Carub.0006s3640 Capsella rubella HOM05D001988 ORTHO05D004985 1.5e-101 374.8 713 36.2
Potri.010G169500 Populus trichocarpa HOM05D001988 ORTHO05D004985 4.4e-101 373.2 434 47.9
MBI19_g09828_MAGBIO Magnolia biondii HOM05D001988 ORTHO05D004985 3.8e-100 370.2 540 42.2
SEGI_17598 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 2.3e-97 360.9 733 33.2
AUR62008859 Chenopodium quinoa HOM05D001988 ORTHO05D004985 1.5e-93 348.2 449 44.8
SEGI_28471 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 1.1e-91 342.0 720 33.5
Zm00001eb284870 Zea mays HOM05D001988 ORTHO05D004985 7.1e-91 339.3 705 32.9
CARHR145370 Cardamine hirsuta HOM05D001988 ORTHO05D004985 2.1e-90 337.8 510 40.0
Atru.chr11.1785 Acer truncatum HOM05D001988 ORTHO05D004985 8.7e-81 305.8 375 49.1
Thhalv10004418m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 2.3e-73 281.2 386 42.5
Hund25598 Selenicereus undatus HOM05D001988 ORTHO05D004985 8.7e-73 279.3 662 32.8
Oeu007681.1 Olea europaea HOM05D001988 ORTHO05D004985 3.7e-71 273.9 319 46.1
Pp3c9_8400 Physcomitrium patens HOM05D001988 ORTHO05D004985 3.1e-70 270.8 729 29.5
arahy.Tifrunner.gnm1.ann1.N3HM5N Arachis hypogaea HOM05D001988 ORTHO05D004985 6.3e-63 246.5 405 38.5
Mapoly0075s0087 Marchantia polymorpha HOM05D001988 ORTHO05D004985 1.1e-62 245.7 825 26.1
ATR0782G208 Amborella trichopoda HOM05D001988 ORTHO05D004985 1.1e-54 219.2 402 39.1
AagrBONN_evm.TU.Sc2ySwM_362.1334 Anthoceros agrestis HOM05D001988 ORTHO05D004985 4.7e-50 203.8 637 26.7
Atru.chr11.1786 Acer truncatum HOM05D001988 ORTHO05D004985 7.9e-50 203.0 139 64.7
PGSC0003DMG400002020 Solanum tuberosum HOM05D001988 ORTHO05D004985 8.8e-49 199.5 164 58.5
Actinidia31897 Actinidia chinensis HOM05D001988 ORTHO05D004985 2.0e-48 198.4 237 46.4
Hund25529 Selenicereus undatus HOM05D001988 ORTHO05D004985 1.3e-44 185.7 260 38.8
RcHm_v2.0_Chr7g0220011 Rosa chinensis HOM05D001988 ORTHO05D004985 2.3e-41 174.9 122 68.0
Medtr4g071850 Medicago truncatula HOM05D001988 ORTHO05D004985 8.8e-41 172.9 210 44.8
RcHm_v2.0_Chr5g0048631 Rosa chinensis HOM05D001988 ORTHO05D004985 1.1e-38 166.0 122 66.4
Aqoxy5G02833 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 8.5e-36 156.4 242 39.7
Peaxi162Scf00342g00711 Petunia axillaris HOM05D001988 ORTHO05D004985 1.2e-34 152.5 534 26.8
AagrBONN_evm.TU.Sc2ySwM_362.1335 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.6e-34 152.1 594 25.9
PSO513G0179 Papaver somniferum HOM05D001988 ORTHO05D004985 1.0e-33 149.4 530 26.6
Aqoxy5G02832 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 1.2e-32 146.0 245 35.1
CARHR145380 Cardamine hirsuta HOM05D001988 ORTHO05D004985 6.5e-28 130.2 191 42.4
Aqoxy5G02834 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 1.5e-27 129.0 112 58.0
SMO239G0039 Selaginella moellendorffii HOM05D001988 ORTHO05D004985 1.6e-26 125.6 148 43.2
CARHR212720 Cardamine hirsuta HOM05D001988 ORTHO05D004985 2.0e-21 108.6 337 30.6
Atru.chr11.1787 Acer truncatum HOM05D001988 ORTHO05D004985 9.5e-19 99.8 62 69.4
AagrBONN_evm.TU.Sc2ySwM_117.2968 Anthoceros agrestis HOM05D001988 ORTHO05D004985 1.4e-17 95.9 194 29.4
Peaxi162Scf00342g00712 Petunia axillaris HOM05D001988 ORTHO05D004985 1.4e-17 95.9 173 39.3
AT1G42615 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 7.5e-16 90.1 149 39.6
Cfa008983 Carpinus fangiana HOM05D001988 ORTHO05D004985 1.7e-15 89.0 125 40.0
CDE06G2098 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 4.6e-13 80.9 324 24.4
BcaC06g34029 Brassica carinata HOM05D001988 ORTHO05D004985 6.6e-12 77.0 76 51.3
Sp2g13990 Schrenkiella parvula HOM05D001988 ORTHO05D004985 6.6e-12 77.0 229 31.4
arahy.Tifrunner.gnm1.ann1.ZE0ACQ Arachis hypogaea HOM05D000603 ORTHO05D008734 1.1e-11 76.3 72 48.6
AagrBONN_evm.TU.Sc2ySwM_369.75 Anthoceros agrestis HOM05D001988 ORTHO05D004985 2.5e-11 75.1 191 25.1
MCO03G550 Micromonas commoda HOM05D001988 ORTHO05D004985 1.2e-10 72.8 475 20.4
AL7G47160 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 2.0e-08 65.5 61 55.7
Os05g0352700 Oryza sativa ssp. japonica HOM05D001988 ORTHO05D004985 2.0e-08 65.5 195 27.2
EL10As5g23508 Beta vulgaris HOM05D001988 ORTHO05D004985 3.4e-08 64.7 59 50.8
CARHR289080 Cardamine hirsuta HOM05D001988 ORTHO05D004985 7.5e-08 63.5 65 53.8
Nitab4.5_0004699g0020 Nicotiana tabacum HOM05D001988 ORTHO05D004985 1.3e-07 62.8 70 45.7
BcaC07g42209 Brassica carinata HOM05D001988 ORTHO05D004985 1.7e-07 62.4 135 37.8
CBR_g30180 Chara braunii HOM05D001988 ORTHO05D004985 1.1e-06 59.7 56 41.1
QL03p064050 Quercus lobata HOM05D001988 ORTHO05D004985 1.1e-06 59.7 56 51.8


User provided reference genes

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