Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.009G202100 Gossypium raimondii HOM05D005848 ORTHO05D047491 2.6e-39 164.9 78 100.0
Gohir.D05G197232 Gossypium hirsutum HOM05D005848 ORTHO05D047491 9.7e-39 162.9 78 98.7
Gohir.A05G194001 Gossypium hirsutum HOM05D005848 ORTHO05D218087 1.0e-27 126.3 58 98.3
Gohir.A01G115800 Gossypium hirsutum HOM05D005848 ORTHO05D007532 4.3e-10 67.8 47 66.0
COL.COLO4_26317 Corchorus olitorius HOM05D005848 ORTHO05D007532 7.3e-10 67.0 46 67.4
vmacro04525 Vaccinium macrocarpon HOM05D005848 ORTHO05D007532 1.2e-09 66.2 53 60.4
GSVIVG01009707001 Vitis vinifera HOM05D005848 ORTHO05D007532 1.6e-09 65.9 40 72.5
Gohir.D01G104100 Gossypium hirsutum HOM05D005848 ORTHO05D007532 2.1e-09 65.5 47 63.8
Gorai.002G128000 Gossypium raimondii HOM05D005848 ORTHO05D007532 2.1e-09 65.5 47 63.8
vmacro11198 Vaccinium macrocarpon HOM05D005848 ORTHO05D007532 3.6e-09 64.7 40 70.0
Atru.chr13.482 Acer truncatum HOM05D005848 ORTHO05D007532 4.7e-09 64.3 47 61.7
Duzib116G0609 Durio zibethinus HOM05D005848 ORTHO05D007532 4.7e-09 64.3 40 70.0
Thecc.08G026700 Theobroma cacao HOM05D005848 ORTHO05D007532 8.0e-09 63.5 40 70.0
TAR381G1506 Trochodendron aralioides HOM05D005848 ORTHO05D007532 8.0e-09 63.5 40 70.0
CSS0006033 Camellia sinensis var. sinensis HOM05D005848 ORTHO05D007532 1.0e-08 63.2 58 55.2
MBI16_g31221_MAGBIO Magnolia biondii HOM05D005848 ORTHO05D007532 1.0e-08 63.2 50 58.0
Sabra02G0198400 Salix brachista HOM05D005848 ORTHO05D007532 1.0e-08 63.2 40 70.0
Cpa.g.sc36.76 Carica papaya HOM05D005848 ORTHO05D007532 1.4e-08 62.8 40 67.5
Manes.18G027000 Manihot esculenta HOM05D005848 ORTHO05D007532 1.8e-08 62.4 40 65.0
Os03g0775300 Oryza sativa ssp. japonica HOM05D005848 ORTHO05D007532 1.8e-08 62.4 40 65.0
Potri.002G260700 Populus trichocarpa HOM05D005848 ORTHO05D007532 2.3e-08 62.0 40 65.0
vmacro04526 Vaccinium macrocarpon HOM05D005848 ORTHO05D007532 2.3e-08 62.0 40 67.5
CsaV3_2G028680 Cucumis sativus L. HOM05D005848 ORTHO05D007532 3.1e-08 61.6 49 57.1
Dinv36081 Davidia involucrata HOM05D005848 ORTHO05D007532 3.1e-08 61.6 40 67.5
Zm00001eb059170 Zea mays HOM05D005848 ORTHO05D007532 3.1e-08 61.6 40 62.5
Aqoxy6G01108 Aquilegia oxysepala HOM05D005848 ORTHO05D007532 5.2e-08 60.8 40 65.0
CiPaw.16G056600 Carya illinoinensis HOM05D005848 ORTHO05D007532 5.2e-08 60.8 40 65.0
Ciclev10003946m.g Citrus clementina HOM05D005848 ORTHO05D007532 5.2e-08 60.8 40 65.0
Prupe.1G379500 Prunus persica HOM05D005848 ORTHO05D007532 5.2e-08 60.8 40 65.0
Sed0016731 Sechium edule HOM05D005848 ORTHO05D007532 5.2e-08 60.8 53 49.1
THA.LOC104809061 Tarenaya hassleriana HOM05D005848 ORTHO05D007532 5.2e-08 60.8 40 65.0
ClCG08G015110 Citrullus lanatus HOM05D005848 ORTHO05D007532 6.8e-08 60.5 49 55.1
PSO675G8513 Papaver somniferum HOM05D005848 ORTHO05D007532 6.8e-08 60.5 46 54.3
unitig_37.g12994 Utricularia gibba HOM05D005848 ORTHO05D007532 6.8e-08 60.5 40 65.0
MELO3C010940.2 Cucumis melo HOM05D005848 ORTHO05D007532 8.9e-08 60.1 49 55.1
HanXRQChr02g0042111 Helianthus annuus HOM05D005848 ORTHO05D007532 8.9e-08 60.1 44 59.1
Rhsim07G0239300 Rhododendron simsii HOM05D005848 ORTHO05D007532 8.9e-08 60.1 40 62.5
Actinidia15328 Actinidia chinensis HOM05D005848 ORTHO05D007532 1.2e-07 59.7 40 65.0
Actinidia22546 Actinidia chinensis HOM05D005848 ORTHO05D007532 1.2e-07 59.7 40 65.0
Nitab4.5_0005373g0030 Nicotiana tabacum HOM05D005848 ORTHO05D007532 1.2e-07 59.7 50 54.0
Sed0003570 Sechium edule HOM05D005848 ORTHO05D007532 1.2e-07 59.7 49 55.1
CANSAT35G0174 Cannabis sativa HOM05D005848 ORTHO05D007532 1.5e-07 59.3 53 49.1
CAN.G1226.12 Capsicum annuum HOM05D005848 ORTHO05D007532 1.5e-07 59.3 53 50.9
CDE01G0181 Ceratophyllum demersum HOM05D005848 ORTHO05D007532 1.5e-07 59.3 40 62.5
Nitab4.5_0006280g0010 Nicotiana tabacum HOM05D005848 ORTHO05D007532 1.5e-07 59.3 50 54.0
TWI56G0568 Tripterygium wilfordii HOM05D005848 ORTHO05D007532 1.5e-07 59.3 40 65.0
Cfa018151 Carpinus fangiana HOM05D005848 ORTHO05D007532 2.0e-07 58.9 40 65.0
FvH4_2g39810 Fragaria vesca HOM05D005848 ORTHO05D007532 2.0e-07 58.9 40 65.0
FAN15G3081 Fragaria x ananassa HOM05D005848 ORTHO05D007532 2.0e-07 58.9 40 65.0
FAN27G0156 Fragaria x ananassa HOM05D005848 ORTHO05D007532 2.0e-07 58.9 40 65.0
MD08G1031900 Malus domestica HOM05D005848 ORTHO05D007532 2.0e-07 58.9 40 62.5
PGR031G0193 Punica granatum HOM05D005848 ORTHO05D007532 2.0e-07 58.9 40 62.5
RcHm_v2.0_Chr6g0301031 Rosa chinensis HOM05D005848 ORTHO05D007532 2.0e-07 58.9 40 65.0
Hund17082 Selenicereus undatus HOM05D005848 ORTHO05D007532 2.0e-07 58.9 45 57.8
arahy.Tifrunner.gnm1.ann1.SF2S3L Arachis hypogaea HOM05D003791 ORTHO05D004961 2.6e-07 58.5 40 65.0
arahy.Tifrunner.gnm1.ann1.U1EDB6 Arachis hypogaea HOM05D005848 ORTHO05D007532 2.6e-07 58.5 40 65.0
PSO541G0294 Papaver somniferum HOM05D005848 ORTHO05D007532 2.6e-07 58.5 46 52.2
EL10Ac1g00774 Beta vulgaris HOM05D005848 ORTHO05D007532 4.4e-07 57.8 51 51.0
Eucgr.F01897 Eucalyptus grandis HOM05D005848 ORTHO05D007532 4.4e-07 57.8 47 55.3
Lalb_Chr14g0369301 Lupinus albus HOM05D005848 ORTHO05D007532 4.4e-07 57.8 51 52.9
Oeu049954.1 Olea europaea HOM05D005848 ORTHO05D007532 4.4e-07 57.8 40 60.0
Sp5g30360 Schrenkiella parvula HOM05D005848 ORTHO05D007532 4.4e-07 57.8 40 62.5
arahy.Tifrunner.gnm1.ann1.K656SJ Arachis hypogaea HOM05D005848 ORTHO05D007532 5.8e-07 57.4 40 62.5
arahy.Tifrunner.gnm1.ann1.R41T5G Arachis hypogaea HOM05D005848 ORTHO05D007532 5.8e-07 57.4 40 62.5
QL02p008579 Quercus lobata HOM05D005848 ORTHO05D007532 5.8e-07 57.4 40 62.5
QL02p008596 Quercus lobata HOM05D005848 ORTHO05D007532 5.8e-07 57.4 40 62.5
TWI36G0400 Tripterygium wilfordii HOM05D005848 ORTHO05D007532 5.8e-07 57.4 40 62.5
HPP92_012274 Vanilla planifolia HOM05D005848 ORTHO05D007532 5.8e-07 57.4 40 62.5
BcaB02g07015 Brassica carinata HOM05D005848 ORTHO05D007532 7.5e-07 57.0 40 62.5
A07p28980 Brassica napus HOM05D005848 ORTHO05D007532 7.5e-07 57.0 40 62.5
A07p40790 Brassica napus HOM05D005848 ORTHO05D007532 7.5e-07 57.0 40 62.5
C06p49180 Brassica napus HOM05D005848 ORTHO05D007532 7.5e-07 57.0 40 62.5
BolC6t39951H Brassica oleracea HOM05D005848 ORTHO05D007532 7.5e-07 57.0 40 62.5
BraA07t30539Z Brassica rapa HOM05D005848 ORTHO05D007532 7.5e-07 57.0 40 62.5
BraA07t31621Z Brassica rapa HOM05D005848 ORTHO05D007532 7.5e-07 57.0 40 62.5
Lj5g0008078 Lotus japonicus HOM05D005848 ORTHO05D007532 7.5e-07 57.0 46 56.5
Migut.C00727 Erythranthe guttata HOM05D005848 ORTHO05D007532 9.8e-07 56.6 40 60.0
Thhalv10018304m.g Eutrema salsugineum HOM05D005848 ORTHO05D007532 9.8e-07 56.6 40 62.5
MD15G1027800 Malus domestica HOM05D005848 ORTHO05D007532 9.8e-07 56.6 40 62.5
Medtr1g022225 Medicago truncatula HOM05D005848 ORTHO05D007532 1.3e-06 56.2 40 62.5
Sopen04g033930 Solanum pennellii HOM05D005848 ORTHO05D007532 1.3e-06 56.2 40 60.0
PGSC0003DMG400004542 Solanum tuberosum HOM05D005848 ORTHO05D007532 1.3e-06 56.2 40 60.0
AT1G75200 Arabidopsis thaliana HOM05D005848 ORTHO05D007532 1.7e-06 55.8 40 60.0
Carub.0002s2201 Capsella rubella HOM05D005848 ORTHO05D007532 1.7e-06 55.8 40 60.0
Cc10_g02890 Coffea canephora HOM05D005848 ORTHO05D007532 1.7e-06 55.8 40 60.0
DCAR_020974 Daucus carota HOM05D005848 ORTHO05D007532 1.7e-06 55.8 46 54.3
ECA247G2683 Erigeron canadensis HOM05D005848 ORTHO05D007532 1.7e-06 55.8 44 54.5
Glyma.14G075000 Glycine max HOM05D005848 ORTHO05D007532 1.7e-06 55.8 40 60.0
Glyma.17G250400 Glycine max HOM05D005848 ORTHO05D007532 1.7e-06 55.8 40 60.0
Ah.05g173260 Amaranthus hybridus HOM05D005848 ORTHO05D007532 2.2e-06 55.5 49 53.1
CARHR068530 Cardamine hirsuta HOM05D005848 ORTHO05D007532 2.2e-06 55.5 40 60.0
Psat6g008800 Pisum sativum HOM05D005848 ORTHO05D007532 2.2e-06 55.5 40 62.5
VMungo0647G1182 Vigna mungo HOM05D005848 ORTHO05D007532 2.2e-06 55.5 40 60.0
SalBow7G2715 Salvia bowleyana HOM05D005848 ORTHO05D007532 2.9e-06 55.1 40 57.5
Solyc04g080340.3 Solanum lycopersicum HOM05D005848 ORTHO05D007532 2.9e-06 55.1 40 57.5
FAN20G0176 Fragaria x ananassa HOM05D005848 ORTHO05D007532 3.7e-06 54.7 40 60.0
FAN20G3094 Fragaria x ananassa HOM05D005848 ORTHO05D007532 3.7e-06 54.7 40 60.0
Nn1g04993 Nelumbo nucifera HOM05D005848 ORTHO05D007532 3.7e-06 54.7 40 57.5
SGA_v2.0_scaffold54G19521 Striga asiatica HOM05D005848 ORTHO05D007532 3.7e-06 54.7 40 57.5
Aa31LG4G5410 Aethionema arabicum HOM05D005848 ORTHO05D007532 4.9e-06 54.3 40 57.5
Ca_13375_v3 Cicer arietinum L. HOM05D005848 ORTHO05D007532 4.9e-06 54.3 40 62.5
Lsat_1_v5_gn_1_17721 Lactuca sativa HOM05D005848 ORTHO05D007532 4.9e-06 54.3 44 54.5
Lj4A40T46 Lonicera japonica HOM05D005848 ORTHO05D007532 4.9e-06 54.3 40 55.0
Peaxi162Scf00417g01212 Petunia axillaris HOM05D005848 ORTHO05D007532 4.9e-06 54.3 50 50.0
Phvul.001G014532 Phaseolus vulgaris HOM05D005848 ORTHO05D007532 4.9e-06 54.3 40 57.5
C06p32750 Brassica napus HOM05D005848 ORTHO05D007532 6.4e-06 53.9 40 60.0
BolC6t38398H Brassica oleracea HOM05D005848 ORTHO05D007532 6.4e-06 53.9 40 60.0
Haze_17969 Corylus avellana HOM05D005848 ORTHO05D007532 6.4e-06 53.9 35 65.7
Sc02g0006150 Simmondsia chinensis HOM05D005848 ORTHO05D007532 6.4e-06 53.9 39 59.0
Mapoly0010s0191 Marchantia polymorpha HOM05D005848 ORTHO05D007532 8.3e-06 53.5 40 57.5
TPR.G20173 Trifolium pratense HOM05D005848 ORTHO05D007532 8.3e-06 53.5 56 48.2


User provided reference genes

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