Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.004G145300 Gossypium raimondii HOM05D004146 ORTHO05D004843 3.1e-254 881.3 456 100.0
Gohir.A08G120400 Gossypium hirsutum HOM05D004146 ORTHO05D004843 3.5e-253 877.9 456 99.6
Gohir.D08G141300 Gossypium hirsutum HOM05D004146 ORTHO05D004843 1.4e-249 865.9 456 99.1
Thecc.01G319000 Theobroma cacao HOM05D004146 ORTHO05D004843 1.6e-229 799.3 456 91.2
COL.COLO4_23187 Corchorus olitorius HOM05D004146 ORTHO05D004843 1.7e-220 769.2 450 88.9
Ciclev10020117m.g Citrus clementina HOM05D004146 ORTHO05D004843 9.2e-214 746.9 457 85.3
Duzib211G0650 Durio zibethinus HOM05D004146 ORTHO05D004843 2.7e-213 745.3 456 86.8
Duzib211G0108 Durio zibethinus HOM05D004146 ORTHO05D004843 1.5e-211 739.6 422 90.8
Atru.chr5.940 Acer truncatum HOM05D004146 ORTHO05D004843 5.6e-211 737.6 457 84.9
Sabra14G0087100 Salix brachista HOM05D004146 ORTHO05D004843 3.1e-209 731.9 462 82.9
Potri.014G117400 Populus trichocarpa HOM05D004146 ORTHO05D004843 4.4e-208 728.0 457 83.2
Cpa.g.sc18.100 Carica papaya HOM05D004146 ORTHO05D004843 7.8e-205 717.2 457 83.4
Manes.05G012300 Manihot esculenta HOM05D004146 ORTHO05D004843 7.8e-205 717.2 456 82.7
QL12p018794 Quercus lobata HOM05D004146 ORTHO05D004843 1.0e-204 716.8 456 82.9
Dinv12116 Davidia involucrata HOM05D004146 ORTHO05D004843 6.2e-202 707.6 456 81.1
CiPaw.08G086700 Carya illinoinensis HOM05D004146 ORTHO05D004843 7.6e-200 700.7 457 80.3
Rhsim13G0002300 Rhododendron simsii HOM05D004146 ORTHO05D004843 3.2e-198 695.3 456 80.0
CSS0038119 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 1.3e-196 689.9 456 79.4
Eucgr.K03560 Eucalyptus grandis HOM05D004146 ORTHO05D004843 5.1e-196 688.0 456 78.3
GSVIVG01028167001 Vitis vinifera HOM05D004146 ORTHO05D004843 6.6e-196 687.6 455 80.0
Actinidia17925 Actinidia chinensis HOM05D004146 ORTHO05D004843 4.3e-195 684.9 456 79.4
TWI14G0575 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 2.8e-194 682.2 455 80.0
CSS0021664 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 3.1e-193 678.7 456 78.7
TWI23G0480 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 3.4e-192 675.2 457 78.3
Sopen01g030990 Solanum pennellii HOM05D004146 ORTHO05D004843 8.4e-191 670.6 457 79.0
CSS0047407 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 1.1e-190 670.2 456 77.4
PGR083G0515 Punica granatum HOM05D004146 ORTHO05D004843 4.2e-190 668.3 457 76.8
vmacro02380 Vaccinium macrocarpon HOM05D004146 ORTHO05D004843 5.4e-190 667.9 462 77.5
Dinv39081 Davidia involucrata HOM05D004146 ORTHO05D004843 1.6e-189 666.4 492 73.8
CANSAT80G2876 Cannabis sativa HOM05D004146 ORTHO05D004843 4.6e-189 664.8 459 76.7
AUR62024599 Chenopodium quinoa HOM05D004146 ORTHO05D004843 6.0e-189 664.5 452 76.8
PGSC0003DMG400009054 Solanum tuberosum HOM05D004146 ORTHO05D004843 1.8e-188 662.9 457 78.1
Nn2g12083 Nelumbo nucifera HOM05D004146 ORTHO05D004843 2.3e-188 662.5 456 77.2
Phvul.001G214900 Phaseolus vulgaris HOM05D004146 ORTHO05D004843 8.7e-188 660.6 456 77.4
VMungo1383G2606 Vigna mungo HOM05D004146 ORTHO05D004843 1.9e-187 659.4 456 77.0
CAN.G293.4 Capsicum annuum HOM05D004146 ORTHO05D004843 3.7e-186 655.2 454 77.8
EL10As5g23605 Beta vulgaris HOM05D004146 ORTHO05D004843 4.8e-186 654.8 452 76.8
Cc01_g21680 Coffea canephora HOM05D004146 ORTHO05D004843 6.2e-186 654.4 468 75.9
THA.LOC104802140 Tarenaya hassleriana HOM05D004146 ORTHO05D004843 8.1e-186 654.1 470 73.4
CARHR142600 Cardamine hirsuta HOM05D004146 ORTHO05D004843 4.5e-184 648.3 456 74.1
Aa31LG1G28520 Aethionema arabicum HOM05D004146 ORTHO05D004843 7.6e-184 647.5 456 74.3
SGA_v2.0_scaffold376G50305 Striga asiatica HOM05D004146 ORTHO05D004843 7.6e-184 647.5 457 75.7
MSTRG.21711 Avicennia marina HOM05D004146 ORTHO05D004843 9.9e-184 647.1 458 75.5
ECA236G0429 Erigeron canadensis HOM05D004146 ORTHO05D004843 9.9e-184 647.1 456 75.2
RcHm_v2.0_Chr3g0486991 Rosa chinensis HOM05D004146 ORTHO05D004843 1.3e-183 646.7 458 76.0
TAR633G1592 Trochodendron aralioides HOM05D004146 ORTHO05D004843 4.9e-183 644.8 456 75.4
Thhalv10001452m.g Eutrema salsugineum HOM05D004146 ORTHO05D004843 1.1e-182 643.7 456 75.0
BcaB06g29458 Brassica carinata HOM05D004146 ORTHO05D004843 1.4e-182 643.3 456 74.1
Sc24g0004180 Simmondsia chinensis HOM05D004146 ORTHO05D004843 1.9e-182 642.9 454 74.7
AT2G47210 Arabidopsis thaliana HOM05D004146 ORTHO05D004843 3.2e-182 642.1 456 74.3
CsaV3_7G030200 Cucumis sativus L. HOM05D004146 ORTHO05D004843 4.2e-182 641.7 457 75.9
Glyma.19G218500 Glycine max HOM05D004146 ORTHO05D004843 5.5e-182 641.3 456 76.1
Sp4g29200 Schrenkiella parvula HOM05D004146 ORTHO05D004843 7.1e-182 641.0 456 74.3
AL4G46770 Arabidopsis lyrata HOM05D004146 ORTHO05D004843 1.2e-181 640.2 456 74.1
Sed0005540 Sechium edule HOM05D004146 ORTHO05D004843 2.7e-181 639.0 457 74.6
Psat3g019080 Pisum sativum HOM05D004146 ORTHO05D004843 6.0e-181 637.9 456 73.7
MELO3C015904.2 Cucumis melo HOM05D004146 ORTHO05D004843 1.3e-180 636.7 457 75.5
MD01G1004200 Malus domestica HOM05D004146 ORTHO05D004843 1.3e-180 636.7 458 75.1
BolC4t21705H Brassica oleracea HOM05D004146 ORTHO05D004843 3.0e-180 635.6 456 73.7
FAN23G2063 Fragaria x ananassa HOM05D004146 ORTHO05D004843 3.9e-180 635.2 458 74.9
C04p00700 Brassica napus HOM05D004146 ORTHO05D004843 5.1e-180 634.8 456 73.7
BcaC02g12586 Brassica carinata HOM05D004146 ORTHO05D004843 6.7e-180 634.4 456 73.5
FvH4_1g26770 Fragaria vesca HOM05D004146 ORTHO05D004843 1.1e-179 633.6 458 75.3
arahy.Tifrunner.gnm1.ann1.E9GQEB Arachis hypogaea HOM05D004146 ORTHO05D004843 1.9e-179 632.9 458 73.6
Glyma.03G221500 Glycine max HOM05D004146 ORTHO05D004843 1.9e-179 632.9 463 73.9
arahy.Tifrunner.gnm1.ann1.BI9FA3 Arachis hypogaea HOM05D004146 ORTHO05D004843 2.5e-179 632.5 458 73.6
Ca_09227_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 7.4e-179 630.9 473 71.9
Solyc01g079210.3 Solanum lycopersicum HOM05D004146 ORTHO05D004843 9.6e-179 630.6 430 78.6
Migut.D00054 Erythranthe guttata HOM05D004146 ORTHO05D004843 1.3e-178 630.2 458 74.0
BcaB02g08794 Brassica carinata HOM05D004146 ORTHO05D004843 2.8e-178 629.0 456 72.6
HanXRQChr06g0168071 Helianthus annuus HOM05D004146 ORTHO05D004843 3.7e-178 628.6 429 76.5
Lj5g0012537 Lotus japonicus HOM05D004146 ORTHO05D004843 3.7e-178 628.6 457 73.7
Peaxi162Scf00770g00128 Petunia axillaris HOM05D004146 ORTHO05D004843 6.2e-178 627.9 453 75.1
BraSC79t46677Z Brassica rapa HOM05D004146 ORTHO05D004843 1.4e-177 626.7 455 72.1
Medtr7g109870 Medicago truncatula HOM05D004146 ORTHO05D004843 4.0e-177 625.2 461 72.9
C04p72630 Brassica napus HOM05D004146 ORTHO05D004843 5.3e-177 624.8 457 72.4
BraA05t19061Z Brassica rapa HOM05D004146 ORTHO05D004843 5.3e-177 624.8 483 69.2
BcaC02g06965 Brassica carinata HOM05D004146 ORTHO05D004843 1.2e-176 623.6 457 72.2
Lalb_Chr18g0046551 Lupinus albus HOM05D004146 ORTHO05D004843 2.0e-176 622.9 457 74.0
arahy.Tifrunner.gnm1.ann1.F4ZKGQ Arachis hypogaea HOM05D004146 ORTHO05D004843 3.4e-176 622.1 456 74.3
FAN28G1198 Fragaria x ananassa HOM05D004146 ORTHO05D004843 4.5e-176 621.7 471 72.4
Lalb_Chr04g0260041 Lupinus albus HOM05D004146 ORTHO05D004843 7.6e-176 620.9 456 74.1
arahy.Tifrunner.gnm1.ann1.TWIF5Z Arachis hypogaea HOM05D004146 ORTHO05D004843 1.0e-175 620.5 456 74.1
FAN19G1384 Fragaria x ananassa HOM05D004146 ORTHO05D004843 2.2e-175 619.4 468 73.1
TPR.G4037 Trifolium pratense HOM05D004146 ORTHO05D004843 2.9e-175 619.0 456 72.4
Carub.0004s2995 Capsella rubella HOM05D004146 ORTHO05D004843 8.4e-175 617.5 456 72.1
Lj1C336G0 Lonicera japonica HOM05D004146 ORTHO05D004843 3.2e-174 615.5 456 73.7
Lj1g0001654 Lotus japonicus HOM05D004146 ORTHO05D004843 4.2e-174 615.1 456 71.1
TPR.G38442 Trifolium pratense HOM05D004146 ORTHO05D004843 5.5e-174 614.8 456 73.0
Carub.0004s2994 Capsella rubella HOM05D004146 ORTHO05D004843 2.1e-173 612.8 456 71.5
Prupe.3G006800 Prunus persica HOM05D004146 ORTHO05D004843 2.1e-173 612.8 394 80.2
A04p34860 Brassica napus HOM05D004146 ORTHO05D004843 2.7e-173 612.5 481 68.2
Nitab4.5_0000222g0120 Nicotiana tabacum HOM05D004146 ORTHO05D004843 6.0e-173 611.3 414 77.5
ClCG09G004890 Citrullus lanatus HOM05D004146 ORTHO05D004843 1.3e-172 610.1 506 67.8
MD15G1342700 Malus domestica HOM05D004146 ORTHO05D004843 2.3e-172 609.4 459 73.2
TAR362G0580 Trochodendron aralioides HOM05D004146 ORTHO05D004843 9.0e-169 597.4 413 77.2
PSO210G5259 Papaver somniferum HOM05D004146 ORTHO05D004843 1.5e-168 596.7 452 70.8
ATR0564G334 Amborella trichopoda HOM05D004146 ORTHO05D004843 1.7e-167 593.2 458 69.9
Aqoxy2G00845 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 2.5e-166 589.3 456 71.7
PSO761G0652 Papaver somniferum HOM05D004146 ORTHO05D004843 2.5e-166 589.3 455 69.7
Actinidia21373 Actinidia chinensis HOM05D004146 ORTHO05D004843 4.2e-166 588.6 452 70.4
Lalb_Chr06g0167021 Lupinus albus HOM05D004146 ORTHO05D004843 1.2e-165 587.0 456 70.4
CDE10G1142 Ceratophyllum demersum HOM05D004146 ORTHO05D004843 1.3e-164 583.6 454 67.8
HPP92_024389 Vanilla planifolia HOM05D004146 ORTHO05D004843 6.7e-164 581.3 455 69.9
Lsat_1_v5_gn_0_33621 Lactuca sativa HOM05D004146 ORTHO05D004843 1.3e-162 577.0 462 69.7
Aqoxy4G02480 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 2.2e-159 566.2 458 69.2
MBI19_g36749_MAGBIO Magnolia biondii HOM05D004146 ORTHO05D004843 1.2e-157 560.5 455 67.9
A05p00620 Brassica napus HOM05D004146 ORTHO05D004843 6.7e-156 554.7 369 77.2
Hma1.2p1_0965F.1_g242130 Hydrangea macrophylla HOM05D004146 ORTHO05D004843 2.6e-155 552.7 461 68.8
Os05g0540800 Oryza sativa ssp. japonica HOM05D004146 ORTHO05D004843 3.1e-153 545.8 457 66.7
Duzib138G1200 Durio zibethinus HOM05D004146 ORTHO05D004843 9.1e-153 544.3 456 68.2
unitig_736.g22928 Utricularia gibba HOM05D004146 ORTHO05D004843 3.8e-151 538.9 462 66.0
Hund09662 Selenicereus undatus HOM05D004146 ORTHO05D004843 6.5e-151 538.1 414 71.7
Medtr1g086590 Medicago truncatula HOM05D004146 ORTHO05D004843 1.9e-150 536.6 429 68.1
Zm00001eb235700 Zea mays HOM05D004146 ORTHO05D004843 4.2e-150 535.4 457 65.2
AUR62011755 Chenopodium quinoa HOM05D004146 ORTHO05D004843 7.9e-149 531.2 430 68.1
Nitab4.5_0010752g0020 Nicotiana tabacum HOM05D004146 ORTHO05D004843 2.6e-147 526.2 371 75.5
Haze_05083 Corylus avellana HOM05D004146 ORTHO05D004843 4.2e-142 508.8 485 62.7
Ca_10265_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 1.8e-140 503.4 511 56.8
DCAR_018267 Daucus carota HOM05D004146 ORTHO05D004843 3.7e-138 495.7 414 66.2
TPR.G31750 Trifolium pratense HOM05D004146 ORTHO05D004843 1.8e-132 476.9 428 63.6
Oeu044739.1 Olea europaea HOM05D004146 ORTHO05D004843 5.7e-131 471.9 399 64.7
CiPaw.07G120600 Carya illinoinensis HOM05D004146 ORTHO05D004843 3.7e-130 469.2 343 72.6
SEGI_29063 Sequoiadendron giganteum HOM05D004146 ORTHO05D004843 1.1e-126 457.6 474 55.9
Lj1A14G70 Lonicera japonica HOM05D004146 ORTHO05D004843 2.8e-122 443.0 344 68.6
Mapoly0165s0024 Marchantia polymorpha HOM05D004146 ORTHO05D004843 1.2e-120 437.6 477 53.5
AagrBONN_evm.TU.Sc2ySwM_228.1245 Anthoceros agrestis HOM05D004146 ORTHO05D004843 1.3e-119 434.1 504 50.6
BcaC02g09008 Brassica carinata HOM05D004146 ORTHO05D004843 1.1e-113 414.5 471 54.1
SMO244G0096 Selaginella moellendorffii HOM05D004146 ORTHO05D004843 1.8e-108 397.1 454 51.1
Pp3c1_35180 Physcomitrium patens HOM05D004146 ORTHO05D004843 4.0e-108 396.0 498 46.2
Psat6g160560 Pisum sativum HOM05D004146 ORTHO05D004843 6.2e-101 372.1 375 56.8
BolC4t25516H Brassica oleracea HOM05D004146 ORTHO05D004843 4.0e-100 369.4 344 61.0
SHI33153 Sapria himalayana HOM05D004146 ORTHO05D004843 3.4e-99 366.3 243 74.5
Dinv33143 Davidia involucrata HOM05D004146 ORTHO05D004843 3.0e-95 353.2 492 48.2
CBR_g3593 Chara braunii HOM05D004146 ORTHO05D004843 1.5e-86 324.3 556 40.5
Psat6g160640 Pisum sativum HOM05D004146 ORTHO05D004843 1.0e-79 301.6 364 50.3
Mapoly0092s0082 Marchantia polymorpha HOM05D004146 ORTHO05D004843 1.6e-77 294.3 522 39.5
Pp3c2_4040 Physcomitrium patens HOM05D004146 ORTHO05D004843 1.3e-74 284.6 394 44.2
BolC4t28751H Brassica oleracea HOM05D004146 ORTHO05D004843 1.9e-73 280.8 260 65.4
BolC4t25515H Brassica oleracea HOM05D004146 ORTHO05D004843 2.8e-61 240.4 173 70.5
C04p39500 Brassica napus HOM05D004146 ORTHO05D004843 7.6e-59 232.3 177 66.1
Lj1g0004326 Lotus japonicus HOM05D004146 ORTHO05D004843 1.4e-57 228.0 261 54.4
C04p39490 Brassica napus HOM05D004146 ORTHO05D004843 5.5e-57 226.1 178 65.2
PRCOL_00004506 Prasinoderma coloniale HOM05D004146 ORTHO05D004843 9.3e-57 225.3 384 40.4
SalBow3G0988 Salvia bowleyana HOM05D004146 ORTHO05D004843 2.2e-53 214.2 128 82.0
BcaC02g09009 Brassica carinata HOM05D004146 ORTHO05D004843 6.3e-53 212.6 171 63.7
AagrBONN_evm.TU.Sc2ySwM_228.1331 Anthoceros agrestis HOM05D004146 ORTHO05D004843 6.5e-50 202.6 388 37.6
Cre03.g144907 Chlamydomonas reinhardtii HOM05D004146 ORTHO05D004843 1.8e-44 184.5 267 40.4
Actinidia20972 Actinidia chinensis HOM05D004146 ORTHO05D004843 5.3e-44 183.0 243 48.6
Psat6g160680 Pisum sativum HOM05D004146 ORTHO05D004843 3.1e-36 157.1 107 67.3
MCO05G453 Micromonas commoda HOM05D004146 ORTHO05D004843 3.5e-35 153.7 363 35.8
Lj1A14G71 Lonicera japonica HOM05D004146 ORTHO05D004843 5.5e-33 146.4 134 64.2
Oeu062253.1 Olea europaea HOM05D004146 ORTHO05D004843 4.7e-32 143.3 140 53.6
Lsat_1_v5_gn_2_7680 Lactuca sativa HOM05D004146 ORTHO05D004843 7.4e-30 136.0 145 60.7
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 6.3e-29 132.9 166 56.0
TPR.G18531 Trifolium pratense HOM05D004146 ORTHO05D004843 1.1e-28 132.1 90 66.7
Lsat_1_v5_gn_8_147141 Lactuca sativa HOM05D004146 ORTHO05D004843 5.3e-28 129.8 142 57.0
Lsat_1_v5_gn_3_136441 Lactuca sativa HOM05D004146 ORTHO05D004843 2.0e-27 127.9 160 52.5
BcaC02g12616 Brassica carinata HOM05D004146 ORTHO05D004843 2.5e-25 120.9 171 45.0
GSVIVG01028163001 Vitis vinifera HOM05D004146 ORTHO05D004843 7.0e-20 102.8 86 66.3
CAN.G111.15 Capsicum annuum HOM05D004146 ORTHO05D004843 2.9e-18 97.4 56 76.8
C04p39510 Brassica napus HOM05D004146 ORTHO05D004843 1.1e-17 95.5 129 52.7
RcHm_v2.0_Chr2g0114941 Rosa chinensis HOM05D004146 ORTHO05D004843 1.1e-17 95.5 99 51.5
Cfa022451 Carpinus fangiana HOM05D004146 ORTHO05D004843 3.6e-16 90.5 312 26.0
HPP92_024388 Vanilla planifolia HOM05D002498 ORTHO05D008129 5.2e-15 86.7 54 75.9
BolC4t28750H Brassica oleracea HOM05D004146 ORTHO05D004843 8.8e-15 85.9 199 34.7
RcHm_v2.0_Chr6g0284911 Rosa chinensis HOM05D004215 ORTHO05D005293 1.3e-10 72.0 109 41.3
VMungo1383G1227 Vigna mungo HOM05D004146 ORTHO05D000001 2.5e-09 67.8 43 81.4
Lsat_1_v5_gn_4_71221 Lactuca sativa HOM05D002292 ORTHO05D003256 2.8e-08 64.3 42 81.0
CSS0026841 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 1.8e-07 61.6 32 93.8
Oeu042819.1 Olea europaea HOM05D004146 ORTHO05D004843 1.8e-07 61.6 40 77.5
DCAR_017471 Daucus carota HOM05D004146 ORTHO05D004843 6.8e-07 59.7 179 29.6
SHI33154 Sapria himalayana HOM05D004146 ORTHO05D004843 5.7e-06 56.6 50 60.0


User provided reference genes

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