Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A08G201701 Gossypium hirsutum HOM05D005824 ORTHO05D007029 2.2e-269 931.8 506 100.0
Gohir.A03G155800 Gossypium hirsutum HOM05D005824 ORTHO05D007029 1.1e-162 577.4 693 56.7
Gorai.005G200700 Gossypium raimondii HOM05D005824 ORTHO05D007029 7.0e-162 574.7 706 56.1
Gohir.D02G178900 Gossypium hirsutum HOM05D005824 ORTHO05D007029 1.3e-147 527.3 706 53.1
Thecc.09G352900 Theobroma cacao HOM05D005824 ORTHO05D007029 1.1e-143 514.2 690 51.9
Duzib150G0567 Durio zibethinus HOM05D005824 ORTHO05D007029 1.1e-138 497.7 670 52.7
Duzib168G0004 Durio zibethinus HOM05D005824 ORTHO05D007029 5.8e-116 422.2 579 49.2
COL.COLO4_11087 Corchorus olitorius HOM05D005824 ORTHO05D007029 2.8e-110 403.3 583 46.0
QL07p026733 Quercus lobata HOM05D005824 ORTHO05D007029 1.6e-97 360.9 670 38.7
GSVIVG01031305001 Vitis vinifera HOM05D005824 ORTHO05D007029 1.6e-94 350.9 665 38.0
CiPaw.10G020000 Carya illinoinensis HOM05D005824 ORTHO05D007029 9.9e-92 341.7 670 40.3
CSS0029355 Camellia sinensis var. sinensis HOM05D005824 ORTHO05D007029 3.5e-89 333.2 663 37.3
Manes.06G027100 Manihot esculenta HOM05D005824 ORTHO05D007029 1.7e-88 330.9 662 37.5
Cpa.g.sc48.209 Carica papaya HOM05D005824 ORTHO05D007029 3.6e-86 323.2 668 35.5
TPR.G21237 Trifolium pratense HOM05D005824 ORTHO05D007029 5.3e-85 319.3 705 35.3
PSO384G0570 Papaver somniferum HOM05D005824 ORTHO05D007029 9.0e-85 318.5 633 37.4
Cfa020078 Carpinus fangiana HOM05D005824 ORTHO05D007029 1.3e-83 314.7 676 38.8
Atru.chr12.1601 Acer truncatum HOM05D005824 ORTHO05D007029 4.9e-83 312.8 694 35.0
PSO063G2449 Papaver somniferum HOM05D005824 ORTHO05D007029 1.9e-82 310.8 596 37.8
PSO339G3868 Papaver somniferum HOM05D005824 ORTHO05D007029 9.3e-82 308.5 634 36.3
Dinv24497 Davidia involucrata HOM05D005824 ORTHO05D007029 3.5e-81 306.6 676 36.1
Lj5A322T66 Lonicera japonica HOM05D005824 ORTHO05D007029 6.0e-81 305.8 627 35.9
Ca_11665_v3 Cicer arietinum L. HOM05D005824 ORTHO05D007029 7.9e-81 305.4 672 34.8
arahy.Tifrunner.gnm1.ann1.E5V6X9 Arachis hypogaea HOM05D005824 ORTHO05D007029 1.0e-80 305.1 716 33.9
Rhsim11G0099700 Rhododendron simsii HOM05D005824 ORTHO05D007029 1.3e-80 304.7 653 37.1
VMungo0720G2244 Vigna mungo HOM05D005824 ORTHO05D007029 1.3e-80 304.7 702 34.5
arahy.Tifrunner.gnm1.ann1.S86EGP Arachis hypogaea HOM05D005824 ORTHO05D007029 2.3e-80 303.9 716 34.2
TAR362G0448 Trochodendron aralioides HOM05D005824 ORTHO05D007029 2.3e-80 303.9 668 38.5
Lalb_Chr02g0154321 Lupinus albus HOM05D005824 ORTHO05D007029 3.3e-79 300.1 717 33.3
PSO017G5895 Papaver somniferum HOM05D005824 ORTHO05D007029 4.3e-79 299.7 620 36.3
Potri.015G010900 Populus trichocarpa HOM05D005824 ORTHO05D007029 9.6e-79 298.5 719 33.1
Eucgr.B01798 Eucalyptus grandis HOM05D005824 ORTHO05D007029 2.8e-78 297.0 677 34.7
Migut.B00860 Erythranthe guttata HOM05D005824 ORTHO05D007029 6.2e-78 295.8 604 36.6
Lj3g0001001 Lotus japonicus HOM05D005824 ORTHO05D007029 1.1e-77 295.0 711 34.5
Nitab4.5_0000185g0360 Nicotiana tabacum HOM05D005824 ORTHO05D007029 1.1e-77 295.0 643 33.6
vmacro01596 Vaccinium macrocarpon HOM05D005824 ORTHO05D007029 1.1e-77 295.0 657 34.7
Psat6g118640 Pisum sativum HOM05D005824 ORTHO05D007029 5.3e-77 292.7 724 34.1
Sopen01g044470 Solanum pennellii HOM05D005824 ORTHO05D007029 6.9e-77 292.4 672 33.6
CANSAT54G1845 Cannabis sativa HOM05D005824 ORTHO05D007029 1.2e-76 291.6 720 33.6
TPR.G12910 Trifolium pratense HOM05D005824 ORTHO05D007029 1.2e-76 291.6 673 34.3
Nitab4.5_0009690g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 1.5e-76 291.2 674 34.7
Sabra15G0009000 Salix brachista HOM05D005824 ORTHO05D007029 2.0e-76 290.8 737 33.4
SalBow7G3942 Salvia bowleyana HOM05D005824 ORTHO05D007029 2.0e-76 290.8 621 36.2
MSTRG.15631 Avicennia marina HOM05D005824 ORTHO05D007029 7.6e-76 288.9 659 34.3
Glyma.02G192500 Glycine max HOM05D005824 ORTHO05D007029 7.6e-76 288.9 712 32.4
Sc09g0002470 Simmondsia chinensis HOM05D005824 ORTHO05D007029 1.0e-75 288.5 722 36.1
THA.LOC104821746 Tarenaya hassleriana HOM05D005824 ORTHO05D007029 1.3e-75 288.1 689 33.4
PGSC0003DMG400018251 Solanum tuberosum HOM05D005824 ORTHO05D007029 2.2e-75 287.3 686 32.2
CAN.G1374.10 Capsicum annuum HOM05D005824 ORTHO05D007029 3.8e-75 286.6 668 33.7
Medtr1g055080 Medicago truncatula HOM05D005824 ORTHO05D007029 8.4e-75 285.4 713 33.8
ClCG07G011770 Citrullus lanatus HOM05D005824 ORTHO05D007029 1.1e-74 285.0 668 33.1
Lj5g0026124 Lotus japonicus HOM05D005824 ORTHO05D007029 3.2e-74 283.5 712 33.7
Aqoxy2G02580 Aquilegia oxysepala HOM05D005824 ORTHO05D007029 2.3e-72 277.3 622 33.3
Glyma.10G084300 Glycine max HOM05D005824 ORTHO05D007029 3.0e-72 276.9 712 31.9
Haze_20113 Corylus avellana HOM05D005824 ORTHO05D007029 5.7e-71 272.7 740 34.3
Oeu061927.1 Olea europaea HOM05D005824 ORTHO05D007029 5.7e-71 272.7 732 32.4
MELO3C017799.2 Cucumis melo HOM05D005824 ORTHO05D007029 7.4e-71 272.3 672 33.3
Nn2g14227 Nelumbo nucifera HOM05D005824 ORTHO05D007029 2.8e-70 270.4 666 34.1
MBI19_g32704_MAGBIO Magnolia biondii HOM05D005824 ORTHO05D007029 3.7e-70 270.0 730 32.5
TWI38G0226 Tripterygium wilfordii HOM05D005824 ORTHO05D007029 4.8e-70 269.6 671 33.4
CsaV3_4G002430 Cucumis sativus L. HOM05D005824 ORTHO05D007029 6.3e-70 269.2 672 32.6
Thhalv10003721m.g Eutrema salsugineum HOM05D005824 ORTHO05D007029 8.2e-70 268.9 686 32.9
Prupe.6G306900 Prunus persica HOM05D005824 ORTHO05D007029 1.1e-69 268.5 721 32.2
Cc02_g35570 Coffea canephora HOM05D005824 ORTHO05D007029 1.5e-68 264.6 769 30.6
ECA247G2466 Erigeron canadensis HOM05D005824 ORTHO05D007029 5.9e-68 262.7 635 34.0
Sp2g21220 Schrenkiella parvula HOM05D005824 ORTHO05D007029 1.0e-67 261.9 692 31.9
Peaxi162Scf00357g00429 Petunia axillaris HOM05D005824 ORTHO05D007029 3.8e-67 260.0 555 37.8
SGA_v2.0_scaffold33G13450 Striga asiatica HOM05D005824 ORTHO05D007029 3.8e-67 260.0 684 32.5
Phvul.007G265900 Phaseolus vulgaris HOM05D005824 ORTHO05D007029 1.4e-66 258.1 712 31.0
Carub.0006s2449 Capsella rubella HOM05D005824 ORTHO05D007029 2.5e-66 257.3 688 32.0
Hma1.2p1_1243F.1_g269980 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 5.5e-66 256.1 522 35.2
Aa31LG11G9880 Aethionema arabicum HOM05D005824 ORTHO05D007029 1.0e-64 251.9 677 31.6
EL10Ac4g09532 Beta vulgaris HOM05D005824 ORTHO05D007029 1.1e-63 248.4 740 29.5
AT5G26760 Arabidopsis thaliana HOM05D005824 ORTHO05D007029 9.7e-63 245.4 710 30.4
Hund21844 Selenicereus undatus HOM05D005824 ORTHO05D007029 1.6e-62 244.6 803 29.3
Sed0007659 Sechium edule HOM05D005824 ORTHO05D007029 6.3e-62 242.7 672 30.8
MD04G1189300 Malus domestica HOM05D005824 ORTHO05D007029 1.4e-61 241.5 707 30.1
CARHR186810 Cardamine hirsuta HOM05D005824 ORTHO05D007029 3.1e-61 240.4 694 29.8
RcHm_v2.0_Chr3g0458051 Rosa chinensis HOM05D005824 ORTHO05D007029 1.5e-60 238.0 706 30.7
Ciclev10011677m.g Citrus clementina HOM05D005824 ORTHO05D007029 2.0e-60 237.7 473 37.8
AUR62006798 Chenopodium quinoa HOM05D005824 ORTHO05D007029 1.0e-59 235.3 753 30.0
MD12G1202100 Malus domestica HOM05D005824 ORTHO05D007029 1.0e-59 235.3 716 30.3
Lsat_1_v5_gn_9_78801 Lactuca sativa HOM05D005824 ORTHO05D007029 2.9e-59 233.8 570 34.2
DCAR_005271 Daucus carota HOM05D005824 ORTHO05D007029 3.8e-59 233.4 665 31.7
AUR62000450 Chenopodium quinoa HOM05D005824 ORTHO05D007029 3.2e-58 230.3 762 29.8
AL6G38630 Arabidopsis lyrata HOM05D005824 ORTHO05D007029 2.7e-57 227.3 814 27.8
FAN14G3202 Fragaria x ananassa HOM05D005824 ORTHO05D007029 1.0e-56 225.3 694 29.7
ATR0693G066 Amborella trichopoda HOM05D005824 ORTHO05D007029 3.0e-56 223.8 618 32.5
Ah.10g027060 Amaranthus hybridus HOM05D005824 ORTHO05D007029 3.9e-56 223.4 746 29.2
FvH4_6g08180 Fragaria vesca HOM05D005824 ORTHO05D007029 8.8e-56 222.2 694 29.5
FAN09G3961 Fragaria x ananassa HOM05D005824 ORTHO05D007029 8.2e-54 215.7 706 28.2
FAN05G5613 Fragaria x ananassa HOM05D005824 ORTHO05D007029 2.4e-53 214.2 660 29.7
unitig_748.g6998 Utricularia gibba HOM05D005824 ORTHO05D000260 2.4e-53 214.2 655 30.1
CDE01G0540 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 5.3e-53 213.0 681 29.4
Nitab4.5_0002783g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 2.0e-52 211.1 599 31.6
PGR083G1123 Punica granatum HOM05D005824 ORTHO05D007029 1.6e-49 201.4 471 34.2
BcaNung03676 Brassica carinata HOM05D005824 ORTHO05D007029 7.9e-49 199.1 555 31.4
C07p41490 Brassica napus HOM05D005824 ORTHO05D007029 1.4e-48 198.4 580 30.7
A02p39030 Brassica napus HOM05D005824 ORTHO05D007029 1.1e-47 195.3 305 39.0
BraA02t08872Z Brassica rapa HOM05D005824 ORTHO05D007029 2.0e-47 194.5 305 39.0
HanXRQChr12g0362901 Helianthus annuus HOM05D005824 ORTHO05D007029 1.3e-46 191.8 592 31.4
BolC2t11924H Brassica oleracea HOM05D005824 ORTHO05D007029 1.1e-45 188.7 303 38.0
C02p58640 Brassica napus HOM05D005824 ORTHO05D007029 3.1e-45 187.2 303 38.0
BolC7t44682H Brassica oleracea HOM05D005824 ORTHO05D007029 7.7e-44 182.6 620 28.1
BcaNung06222 Brassica carinata HOM05D005824 ORTHO05D007029 2.1e-41 174.5 293 37.5
FAN02G4519 Fragaria x ananassa HOM05D005824 ORTHO05D007029 1.0e-40 172.2 649 28.0
HPP92_021934 Vanilla planifolia HOM05D005824 ORTHO05D007029 1.1e-34 152.1 364 33.5
Os05g0134300 Oryza sativa ssp. japonica HOM05D005824 ORTHO05D007029 2.3e-32 144.4 724 24.7
SEGI_20129 Sequoiadendron giganteum HOM05D005824 ORTHO05D007029 1.6e-28 131.7 323 33.1
Hma1.2p1_1553F.1_g290340 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 3.8e-27 127.1 519 28.1
Zm00001eb354720 Zea mays HOM05D005824 ORTHO05D007029 2.8e-25 120.9 242 36.0
Solyc01g101010.4 Solanum lycopersicum HOM05D005824 ORTHO05D007029 4.4e-23 113.6 110 50.9
CANSAT54G0922 Cannabis sativa HOM05D005824 ORTHO05D007029 3.7e-22 110.5 209 35.9
Nitab4.5_0000185g0370 Nicotiana tabacum HOM05D005824 ORTHO05D007029 3.7e-22 110.5 112 55.4
Mapoly0075s0015 Marchantia polymorpha HOM05D005824 ORTHO05D007029 9.2e-21 105.9 664 25.0
SMO203G0090 Selaginella moellendorffii HOM05D005824 ORTHO05D007029 1.2e-20 105.5 524 25.6
SGA_v2.0_scaffold438G51629 Striga asiatica HOM05D005824 ORTHO05D007029 1.1e-18 99.0 100 51.0
Actinidia35501 Actinidia chinensis HOM05D005824 ORTHO05D007029 5.6e-18 96.7 396 27.8
Pp3c6_10400 Physcomitrium patens HOM05D005824 ORTHO05D007029 1.4e-16 92.0 109 44.0
A06p36990 Brassica napus HOM05D005824 ORTHO05D007029 1.5e-15 88.6 95 48.4
BraA06t26625Z Brassica rapa HOM05D005824 ORTHO05D007029 1.5e-15 88.6 95 48.4
CBR_g20185 Chara braunii HOM05D005824 ORTHO05D007029 9.8e-15 85.9 303 26.4
HPP92_021933 Vanilla planifolia HOM05D005824 ORTHO05D007029 5.9e-12 76.6 101 39.6
Oeu060660.1 Olea europaea HOM05D005824 ORTHO05D007029 3.6e-09 67.4 74 51.4
Zm00001eb056090 Zea mays HOM05D000739 ORTHO05D007029 8.0e-09 66.2 102 39.2
AagrBONN_evm.TU.Sc2ySwM_117.2728 Anthoceros agrestis HOM05D005824 ORTHO05D007029 1.8e-08 65.1 588 21.1
AUR62009842 Chenopodium quinoa HOM05D003327 ORTHO05D004535 3.1e-08 64.3 157 36.3
VMungo0251G1262 Vigna mungo HOM05D005824 ORTHO05D007029 3.1e-08 64.3 102 44.1
Cfa020079 Carpinus fangiana HOM05D005824 ORTHO05D007029 2.6e-07 61.2 72 50.0
Zm00001eb289330 Zea mays HOM05D005824 ORTHO05D007029 2.6e-07 61.2 94 39.4
Dinv30929 Davidia involucrata HOM05D005824 ORTHO05D007029 9.8e-07 59.3 53 52.8


User provided reference genes

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