Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A08G120400 Gossypium hirsutum HOM05D004146 ORTHO05D004843 1.8e-254 882.1 456 100.0
Gorai.004G145300 Gossypium raimondii HOM05D004146 ORTHO05D004843 3.5e-253 877.9 456 99.6
Gohir.D08G141300 Gossypium hirsutum HOM05D004146 ORTHO05D004843 1.5e-248 862.4 456 98.7
Thecc.01G319000 Theobroma cacao HOM05D004146 ORTHO05D004843 1.7e-228 795.8 456 90.8
COL.COLO4_23187 Corchorus olitorius HOM05D004146 ORTHO05D004843 1.9e-219 765.8 450 88.4
Ciclev10020117m.g Citrus clementina HOM05D004146 ORTHO05D004843 2.7e-213 745.3 457 85.1
Duzib211G0650 Durio zibethinus HOM05D004146 ORTHO05D004843 3.0e-212 741.9 456 86.4
Duzib211G0108 Durio zibethinus HOM05D004146 ORTHO05D004843 1.6e-210 736.1 422 90.3
Atru.chr5.940 Acer truncatum HOM05D004146 ORTHO05D004843 2.8e-210 735.3 457 84.7
Sabra14G0087100 Salix brachista HOM05D004146 ORTHO05D004843 3.4e-208 728.4 462 82.5
Potri.014G117400 Populus trichocarpa HOM05D004146 ORTHO05D004843 2.2e-207 725.7 457 82.9
Cpa.g.sc18.100 Carica papaya HOM05D004146 ORTHO05D004843 1.3e-204 716.5 457 83.2
Manes.05G012300 Manihot esculenta HOM05D004146 ORTHO05D004843 2.3e-204 715.7 456 82.5
QL12p018794 Quercus lobata HOM05D004146 ORTHO05D004843 3.0e-204 715.3 456 82.7
Dinv12116 Davidia involucrata HOM05D004146 ORTHO05D004843 1.8e-201 706.1 456 80.9
CiPaw.08G086700 Carya illinoinensis HOM05D004146 ORTHO05D004843 9.9e-200 700.3 457 80.3
Rhsim13G0002300 Rhododendron simsii HOM05D004146 ORTHO05D004843 9.3e-198 693.7 456 79.8
CSS0038119 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 3.9e-196 688.3 456 79.2
Eucgr.K03560 Eucalyptus grandis HOM05D004146 ORTHO05D004843 1.5e-195 686.4 456 78.1
GSVIVG01028167001 Vitis vinifera HOM05D004146 ORTHO05D004843 1.9e-195 686.0 455 79.8
Actinidia17925 Actinidia chinensis HOM05D004146 ORTHO05D004843 1.3e-194 683.3 456 79.2
TWI14G0575 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 1.4e-193 679.9 455 79.8
CSS0021664 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 9.0e-193 677.2 456 78.5
TWI23G0480 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 3.8e-191 671.8 457 77.9
Sopen01g030990 Solanum pennellii HOM05D004146 ORTHO05D004843 1.4e-190 669.8 456 78.7
CSS0047407 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 3.2e-190 668.7 456 77.2
PGR083G0515 Punica granatum HOM05D004146 ORTHO05D004843 1.2e-189 666.8 457 76.6
vmacro02380 Vaccinium macrocarpon HOM05D004146 ORTHO05D004843 1.6e-189 666.4 462 77.3
AUR62024599 Chenopodium quinoa HOM05D004146 ORTHO05D004843 3.5e-189 665.2 452 76.8
Dinv39081 Davidia involucrata HOM05D004146 ORTHO05D004843 4.6e-189 664.8 492 73.6
CANSAT80G2876 Cannabis sativa HOM05D004146 ORTHO05D004843 1.3e-188 663.3 459 76.5
PGSC0003DMG400009054 Solanum tuberosum HOM05D004146 ORTHO05D004843 3.0e-188 662.1 456 77.9
Nn2g12083 Nelumbo nucifera HOM05D004146 ORTHO05D004843 6.7e-188 661.0 456 77.0
Phvul.001G214900 Phaseolus vulgaris HOM05D004146 ORTHO05D004843 9.6e-187 657.1 456 77.0
VMungo1383G2606 Vigna mungo HOM05D004146 ORTHO05D004843 2.1e-186 656.0 456 76.5
EL10As5g23605 Beta vulgaris HOM05D004146 ORTHO05D004843 3.7e-186 655.2 452 77.4
CAN.G293.4 Capsicum annuum HOM05D004146 ORTHO05D004843 8.1e-186 654.1 453 77.0
THA.LOC104802140 Tarenaya hassleriana HOM05D004146 ORTHO05D004843 1.1e-185 653.7 470 73.4
Cc01_g21680 Coffea canephora HOM05D004146 ORTHO05D004843 1.8e-185 652.9 468 75.6
CARHR142600 Cardamine hirsuta HOM05D004146 ORTHO05D004843 1.3e-183 646.7 456 73.9
SGA_v2.0_scaffold376G50305 Striga asiatica HOM05D004146 ORTHO05D004843 1.7e-183 646.4 457 75.5
Aa31LG1G28520 Aethionema arabicum HOM05D004146 ORTHO05D004843 2.2e-183 646.0 456 74.1
MSTRG.21711 Avicennia marina HOM05D004146 ORTHO05D004843 2.9e-183 645.6 458 75.3
ECA236G0429 Erigeron canadensis HOM05D004146 ORTHO05D004843 2.9e-183 645.6 456 75.0
RcHm_v2.0_Chr3g0486991 Rosa chinensis HOM05D004146 ORTHO05D004843 4.9e-183 644.8 458 75.8
TAR633G1592 Trochodendron aralioides HOM05D004146 ORTHO05D004843 6.4e-183 644.4 456 75.4
Thhalv10001452m.g Eutrema salsugineum HOM05D004146 ORTHO05D004843 3.2e-182 642.1 456 74.8
BcaB06g29458 Brassica carinata HOM05D004146 ORTHO05D004843 4.2e-182 641.7 456 73.9
Sc24g0004180 Simmondsia chinensis HOM05D004146 ORTHO05D004843 5.5e-182 641.3 454 74.4
AT2G47210 Arabidopsis thaliana HOM05D004146 ORTHO05D004843 9.3e-182 640.6 456 74.1
CsaV3_7G030200 Cucumis sativus L. HOM05D004146 ORTHO05D004843 1.2e-181 640.2 457 75.7
Sp4g29200 Schrenkiella parvula HOM05D004146 ORTHO05D004843 2.1e-181 639.4 456 74.1
AL4G46770 Arabidopsis lyrata HOM05D004146 ORTHO05D004843 3.5e-181 638.6 456 73.9
Glyma.19G218500 Glycine max HOM05D004146 ORTHO05D004843 6.0e-181 637.9 456 75.7
Sed0005540 Sechium edule HOM05D004146 ORTHO05D004843 7.9e-181 637.5 457 74.4
MELO3C015904.2 Cucumis melo HOM05D004146 ORTHO05D004843 3.9e-180 635.2 457 75.3
Psat3g019080 Pisum sativum HOM05D004146 ORTHO05D004843 6.7e-180 634.4 456 73.2
BolC4t21705H Brassica oleracea HOM05D004146 ORTHO05D004843 8.7e-180 634.0 456 73.5
MD01G1004200 Malus domestica HOM05D004146 ORTHO05D004843 1.1e-179 633.6 458 74.7
C04p00700 Brassica napus HOM05D004146 ORTHO05D004843 1.5e-179 633.3 456 73.5
BcaC02g12586 Brassica carinata HOM05D004146 ORTHO05D004843 1.9e-179 632.9 456 73.2
FAN23G2063 Fragaria x ananassa HOM05D004146 ORTHO05D004843 1.9e-179 632.9 458 74.7
FvH4_1g26770 Fragaria vesca HOM05D004146 ORTHO05D004843 4.3e-179 631.7 458 75.1
Solyc01g079210.3 Solanum lycopersicum HOM05D004146 ORTHO05D004843 1.3e-178 630.2 429 78.3
arahy.Tifrunner.gnm1.ann1.E9GQEB Arachis hypogaea HOM05D004146 ORTHO05D004843 2.1e-178 629.4 458 73.1
Glyma.03G221500 Glycine max HOM05D004146 ORTHO05D004843 2.1e-178 629.4 463 73.4
arahy.Tifrunner.gnm1.ann1.BI9FA3 Arachis hypogaea HOM05D004146 ORTHO05D004843 2.8e-178 629.0 458 73.1
Migut.D00054 Erythranthe guttata HOM05D004146 ORTHO05D004843 3.7e-178 628.6 458 73.8
Lj5g0012537 Lotus japonicus HOM05D004146 ORTHO05D004843 4.8e-178 628.2 457 73.7
Peaxi162Scf00770g00128 Petunia axillaris HOM05D004146 ORTHO05D004843 6.2e-178 627.9 453 75.1
BcaB02g08794 Brassica carinata HOM05D004146 ORTHO05D004843 8.2e-178 627.5 456 72.4
Ca_09227_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 8.2e-178 627.5 473 71.5
HanXRQChr06g0168071 Helianthus annuus HOM05D004146 ORTHO05D004843 1.4e-177 626.7 429 76.2
BraSC79t46677Z Brassica rapa HOM05D004146 ORTHO05D004843 3.1e-177 625.5 455 72.3
C04p72630 Brassica napus HOM05D004146 ORTHO05D004843 1.5e-176 623.2 457 72.2
BraA05t19061Z Brassica rapa HOM05D004146 ORTHO05D004843 1.5e-176 623.2 483 68.9
BcaC02g06965 Brassica carinata HOM05D004146 ORTHO05D004843 3.4e-176 622.1 457 72.0
Medtr7g109870 Medicago truncatula HOM05D004146 ORTHO05D004843 4.5e-176 621.7 461 72.5
Lalb_Chr18g0046551 Lupinus albus HOM05D004146 ORTHO05D004843 1.0e-175 620.5 457 73.7
FAN28G1198 Fragaria x ananassa HOM05D004146 ORTHO05D004843 2.2e-175 619.4 471 72.2
arahy.Tifrunner.gnm1.ann1.F4ZKGQ Arachis hypogaea HOM05D004146 ORTHO05D004843 3.8e-175 618.6 456 73.9
FAN19G1384 Fragaria x ananassa HOM05D004146 ORTHO05D004843 8.4e-175 617.5 468 72.9
Lalb_Chr04g0260041 Lupinus albus HOM05D004146 ORTHO05D004843 8.4e-175 617.5 456 73.7
arahy.Tifrunner.gnm1.ann1.TWIF5Z Arachis hypogaea HOM05D004146 ORTHO05D004843 1.1e-174 617.1 456 73.7
Carub.0004s2995 Capsella rubella HOM05D004146 ORTHO05D004843 2.5e-174 615.9 456 71.9
Lj1g0001654 Lotus japonicus HOM05D004146 ORTHO05D004843 3.2e-174 615.5 456 71.1
TPR.G4037 Trifolium pratense HOM05D004146 ORTHO05D004843 3.2e-174 615.5 456 71.9
Lj1C336G0 Lonicera japonica HOM05D004146 ORTHO05D004843 9.3e-174 614.0 456 73.5
A04p34860 Brassica napus HOM05D004146 ORTHO05D004843 6.0e-173 611.3 481 68.4
Carub.0004s2994 Capsella rubella HOM05D004146 ORTHO05D004843 6.0e-173 611.3 456 71.3
TPR.G38442 Trifolium pratense HOM05D004146 ORTHO05D004843 6.0e-173 611.3 456 72.6
Nitab4.5_0000222g0120 Nicotiana tabacum HOM05D004146 ORTHO05D004843 7.9e-173 610.9 414 77.5
Prupe.3G006800 Prunus persica HOM05D004146 ORTHO05D004843 2.3e-172 609.4 394 79.7
ClCG09G004890 Citrullus lanatus HOM05D004146 ORTHO05D004843 3.9e-172 608.6 506 67.6
MD15G1342700 Malus domestica HOM05D004146 ORTHO05D004843 2.5e-171 605.9 459 72.8
TAR362G0580 Trochodendron aralioides HOM05D004146 ORTHO05D004843 1.2e-168 597.0 413 77.2
PSO210G5259 Papaver somniferum HOM05D004146 ORTHO05D004843 4.5e-168 595.1 452 70.6
ATR0564G334 Amborella trichopoda HOM05D004146 ORTHO05D004843 1.9e-166 589.7 458 69.4
Aqoxy2G00845 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 7.2e-166 587.8 456 71.5
PSO761G0652 Papaver somniferum HOM05D004146 ORTHO05D004843 9.3e-166 587.4 455 69.5
Actinidia21373 Actinidia chinensis HOM05D004146 ORTHO05D004843 1.2e-165 587.0 452 70.1
Lalb_Chr06g0167021 Lupinus albus HOM05D004146 ORTHO05D004843 3.6e-165 585.5 456 70.2
CDE10G1142 Ceratophyllum demersum HOM05D004146 ORTHO05D004843 1.5e-163 580.1 454 67.4
HPP92_024389 Vanilla planifolia HOM05D004146 ORTHO05D004843 2.5e-163 579.3 455 69.7
Lsat_1_v5_gn_0_33621 Lactuca sativa HOM05D004146 ORTHO05D004843 3.7e-162 575.5 462 69.5
Aqoxy4G02480 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 6.5e-159 564.7 458 69.0
MBI19_g36749_MAGBIO Magnolia biondii HOM05D004146 ORTHO05D004843 1.4e-156 557.0 455 67.5
A05p00620 Brassica napus HOM05D004146 ORTHO05D004843 2.0e-155 553.1 369 77.0
Hma1.2p1_0965F.1_g242130 Hydrangea macrophylla HOM05D004146 ORTHO05D004843 3.3e-155 552.4 461 68.8
Duzib138G1200 Durio zibethinus HOM05D004146 ORTHO05D004843 1.2e-152 543.9 456 68.2
Os05g0540800 Oryza sativa ssp. japonica HOM05D004146 ORTHO05D004843 1.2e-152 543.9 457 66.5
unitig_736.g22928 Utricularia gibba HOM05D004146 ORTHO05D004843 3.8e-151 538.9 462 66.0
Hund09662 Selenicereus undatus HOM05D004146 ORTHO05D004843 1.1e-150 537.3 414 71.5
Zm00001eb235700 Zea mays HOM05D004146 ORTHO05D004843 1.6e-149 533.5 457 65.0
Medtr1g086590 Medicago truncatula HOM05D004146 ORTHO05D004843 2.1e-149 533.1 429 67.6
AUR62011755 Chenopodium quinoa HOM05D004146 ORTHO05D004843 4.7e-149 531.9 430 68.1
Nitab4.5_0010752g0020 Nicotiana tabacum HOM05D004146 ORTHO05D004843 3.3e-147 525.8 371 75.5
Haze_05083 Corylus avellana HOM05D004146 ORTHO05D004843 4.7e-141 505.4 485 62.3
Ca_10265_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 8.8e-140 501.1 511 56.6
DCAR_018267 Daucus carota HOM05D004146 ORTHO05D004843 8.2e-138 494.6 414 65.9
TPR.G31750 Trifolium pratense HOM05D004146 ORTHO05D004843 2.0e-131 473.4 428 63.1
Oeu044739.1 Olea europaea HOM05D004146 ORTHO05D004843 7.5e-131 471.5 399 64.7
CiPaw.07G120600 Carya illinoinensis HOM05D004146 ORTHO05D004843 1.1e-129 467.6 343 72.3
SEGI_29063 Sequoiadendron giganteum HOM05D004146 ORTHO05D004843 1.5e-126 457.2 474 55.9
Lj1A14G70 Lonicera japonica HOM05D004146 ORTHO05D004843 2.8e-122 443.0 344 68.6
Mapoly0165s0024 Marchantia polymorpha HOM05D004146 ORTHO05D004843 9.2e-121 438.0 477 53.5
AagrBONN_evm.TU.Sc2ySwM_228.1245 Anthoceros agrestis HOM05D004146 ORTHO05D004843 5.0e-119 432.2 504 50.4
BcaC02g09008 Brassica carinata HOM05D004146 ORTHO05D004843 3.2e-113 412.9 471 53.9
SMO244G0096 Selaginella moellendorffii HOM05D004146 ORTHO05D004843 1.8e-108 397.1 454 51.1
Pp3c1_35180 Physcomitrium patens HOM05D004146 ORTHO05D004843 2.3e-108 396.7 498 46.4
Psat6g160560 Pisum sativum HOM05D004146 ORTHO05D004843 1.8e-100 370.5 375 56.5
BolC4t25516H Brassica oleracea HOM05D004146 ORTHO05D004843 2.6e-99 366.7 345 60.9
SHI33153 Sapria himalayana HOM05D004146 ORTHO05D004843 4.4e-99 365.9 243 74.5
Dinv33143 Davidia involucrata HOM05D004146 ORTHO05D004843 8.6e-95 351.7 492 48.0
CBR_g3593 Chara braunii HOM05D004146 ORTHO05D004843 7.3e-86 322.0 556 40.3
Psat6g160640 Pisum sativum HOM05D004146 ORTHO05D004843 2.3e-79 300.4 364 50.0
Mapoly0092s0082 Marchantia polymorpha HOM05D004146 ORTHO05D004843 2.8e-77 293.5 522 39.5
Pp3c2_4040 Physcomitrium patens HOM05D004146 ORTHO05D004843 1.7e-74 284.3 385 44.7
BolC4t28751H Brassica oleracea HOM05D004146 ORTHO05D004843 5.4e-73 279.3 260 65.0
BolC4t25515H Brassica oleracea HOM05D004146 ORTHO05D004843 2.8e-61 240.4 173 70.5
C04p39500 Brassica napus HOM05D004146 ORTHO05D004843 7.6e-59 232.3 177 66.1
Lj1g0004326 Lotus japonicus HOM05D004146 ORTHO05D004843 1.4e-57 228.0 261 54.4
C04p39490 Brassica napus HOM05D004146 ORTHO05D004843 5.5e-57 226.1 178 65.2
PRCOL_00004506 Prasinoderma coloniale HOM05D004146 ORTHO05D004843 1.2e-56 224.9 384 40.4
SalBow3G0988 Salvia bowleyana HOM05D004146 ORTHO05D004843 2.2e-53 214.2 128 82.0
BcaC02g09009 Brassica carinata HOM05D004146 ORTHO05D004843 6.3e-53 212.6 171 63.7
AagrBONN_evm.TU.Sc2ySwM_228.1331 Anthoceros agrestis HOM05D004146 ORTHO05D004843 1.1e-49 201.8 388 37.4
Cre03.g144907 Chlamydomonas reinhardtii HOM05D004146 ORTHO05D004843 8.2e-45 185.7 267 40.4
Actinidia20972 Actinidia chinensis HOM05D004146 ORTHO05D004843 1.5e-43 181.4 243 48.1
Psat6g160680 Pisum sativum HOM05D004146 ORTHO05D004843 3.1e-36 157.1 107 67.3
MCO05G453 Micromonas commoda HOM05D004146 ORTHO05D004843 1.5e-35 154.8 370 34.6
Lj1A14G71 Lonicera japonica HOM05D004146 ORTHO05D004843 5.5e-33 146.4 134 64.2
Oeu062253.1 Olea europaea HOM05D004146 ORTHO05D004843 4.7e-32 143.3 140 53.6
Lsat_1_v5_gn_2_7680 Lactuca sativa HOM05D004146 ORTHO05D004843 2.2e-29 134.4 132 62.9
TPR.G18531 Trifolium pratense HOM05D004146 ORTHO05D004843 1.1e-28 132.1 90 66.7
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 7.0e-28 129.4 166 54.8
Lsat_1_v5_gn_8_147141 Lactuca sativa HOM05D004146 ORTHO05D004843 1.2e-27 128.6 142 56.3
Lsat_1_v5_gn_3_136441 Lactuca sativa HOM05D004146 ORTHO05D004843 5.9e-27 126.3 160 51.9
BcaC02g12616 Brassica carinata HOM05D004146 ORTHO05D004843 2.5e-25 120.9 171 45.0
GSVIVG01028163001 Vitis vinifera HOM05D004146 ORTHO05D004843 7.0e-20 102.8 86 66.3
CAN.G111.15 Capsicum annuum HOM05D004146 ORTHO05D004843 2.9e-18 97.4 56 76.8
RcHm_v2.0_Chr2g0114941 Rosa chinensis HOM05D004146 ORTHO05D004843 1.1e-17 95.5 99 51.5
C04p39510 Brassica napus HOM05D004146 ORTHO05D004843 4.2e-17 93.6 129 51.9
Cfa022451 Carpinus fangiana HOM05D004146 ORTHO05D004843 2.1e-16 91.3 312 26.0
HPP92_024388 Vanilla planifolia HOM05D002498 ORTHO05D008129 5.2e-15 86.7 54 75.9
BolC4t28750H Brassica oleracea HOM05D004146 ORTHO05D004843 8.8e-15 85.9 199 34.7
RcHm_v2.0_Chr6g0284911 Rosa chinensis HOM05D004215 ORTHO05D005293 1.3e-10 72.0 109 41.3
VMungo1383G1227 Vigna mungo HOM05D004146 ORTHO05D000001 2.5e-09 67.8 43 81.4
Lsat_1_v5_gn_4_71221 Lactuca sativa HOM05D002292 ORTHO05D003256 2.8e-08 64.3 42 81.0
CSS0026841 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 1.8e-07 61.6 32 93.8
Oeu042819.1 Olea europaea HOM05D004146 ORTHO05D004843 1.8e-07 61.6 40 77.5
DCAR_017471 Daucus carota HOM05D004146 ORTHO05D004843 6.8e-07 59.7 179 29.6
SHI33154 Sapria himalayana HOM05D004146 ORTHO05D004843 5.7e-06 56.6 50 60.0


User provided reference genes

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