Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.A07G044400 Gossypium hirsutum HOM05D005564 ORTHO05D006872 1.3e-162 576.2 282 100.0
Gorai.001G052100 Gossypium raimondii HOM05D005564 ORTHO05D006872 5.1e-122 441.4 265 84.5
Gohir.D07G048900 Gossypium hirsutum HOM05D005564 ORTHO05D006872 6.7e-122 441.0 265 84.2
Gohir.A13G032000 Gossypium hirsutum HOM05D005564 ORTHO05D006872 4.3e-121 438.3 265 83.0
Gorai.007G289400 Gossypium raimondii HOM05D005564 ORTHO05D006872 1.3e-120 436.8 265 83.8
Gorai.005G129900 Gossypium raimondii HOM05D005564 ORTHO05D006872 9.0e-119 430.6 265 83.0
Duzib084G1177 Durio zibethinus HOM05D005564 ORTHO05D006872 3.4e-110 402.1 265 76.2
Thecc.03G145600 Theobroma cacao HOM05D005564 ORTHO05D006872 6.3e-104 381.3 264 71.2
Gorai.013G121700 Gossypium raimondii HOM05D005564 ORTHO05D006872 3.3e-97 359.0 235 78.3
Cfa013601 Carpinus fangiana HOM05D005564 ORTHO05D006872 1.6e-94 350.1 265 66.0
Manes.06G130000 Manihot esculenta HOM05D005564 ORTHO05D006872 3.5e-94 349.0 260 66.9
CiPaw.07G183300 Carya illinoinensis HOM05D005564 ORTHO05D006872 4.5e-94 348.6 267 63.7
COL.COLO4_37310 Corchorus olitorius HOM05D005564 ORTHO05D006872 2.2e-93 346.3 234 73.9
MD07G1241800 Malus domestica HOM05D005564 ORTHO05D006872 4.2e-92 342.0 265 64.2
MD07G1243700 Malus domestica HOM05D005564 ORTHO05D006872 7.2e-92 341.3 260 64.2
QL09p027441 Quercus lobata HOM05D005564 ORTHO05D006872 7.2e-92 341.3 260 64.2
GSVIVG01024470001 Vitis vinifera HOM05D005564 ORTHO05D006872 1.2e-91 340.5 260 63.5
Atru.chr6.1979 Acer truncatum HOM05D005564 ORTHO05D006872 2.7e-91 339.3 265 64.2
Atru.chr6.2007 Acer truncatum HOM05D005564 ORTHO05D006872 2.7e-91 339.3 265 64.2
FvH4_7g26720 Fragaria vesca HOM05D005564 ORTHO05D006872 3.6e-91 339.0 265 63.8
Sabra15G0133100 Salix brachista HOM05D005564 ORTHO05D006872 6.8e-90 334.7 265 63.8
Potri.015G111628 Populus trichocarpa HOM05D005564 ORTHO05D006872 7.5e-89 331.3 260 64.2
Hma1.2p1_1014F.1_g247960 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 9.8e-89 330.9 267 63.3
Hma1.2p1_1305F.1_g274526 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 9.8e-89 330.9 267 63.3
Prupe.2G270700 Prunus persica HOM05D005564 ORTHO05D006872 9.8e-89 330.9 260 62.3
Cpa.g.sc13.231 Carica papaya HOM05D005564 ORTHO05D006872 6.3e-88 328.2 260 63.8
Ciclev10032148m.g Citrus clementina HOM05D005564 ORTHO05D006872 1.4e-87 327.0 269 61.3
TAR629G2772 Trochodendron aralioides HOM05D005564 ORTHO05D006872 5.4e-87 325.1 258 62.8
Haze_22223 Corylus avellana HOM05D005564 ORTHO05D006872 9.1e-87 324.3 251 65.3
EL10Ac7g17720 Beta vulgaris HOM05D005564 ORTHO05D006872 1.6e-86 323.6 290 58.3
Ah.08g213710 Amaranthus hybridus HOM05D005564 ORTHO05D006872 2.7e-86 322.8 265 61.5
TWI39G1038 Tripterygium wilfordii HOM05D005564 ORTHO05D006872 3.5e-86 322.4 261 62.5
Dinv34536 Davidia involucrata HOM05D005564 ORTHO05D006872 7.7e-86 321.2 249 64.7
HanXRQChr08g0223121 Helianthus annuus HOM05D005564 ORTHO05D006872 1.0e-85 320.9 266 62.4
VMungo1383G3643 Vigna mungo HOM05D005564 ORTHO05D006872 2.2e-85 319.7 258 62.4
HanXRQChr08g0221891 Helianthus annuus HOM05D005564 ORTHO05D006872 3.8e-85 318.9 266 62.0
CANSAT56G0249 Cannabis sativa HOM05D005564 ORTHO05D006872 6.5e-85 318.2 260 60.4
Lj8A49G34 Lonicera japonica HOM05D005564 ORTHO05D006872 8.5e-85 317.8 263 62.0
Hund18321 Selenicereus undatus HOM05D005564 ORTHO05D006872 1.1e-84 317.4 252 63.1
Sed0010204 Sechium edule HOM05D005564 ORTHO05D006872 7.2e-84 314.7 273 57.9
VMungo1080G0069 Vigna mungo HOM05D005564 ORTHO05D006872 7.2e-84 314.7 268 61.2
Sp6g13380 Schrenkiella parvula HOM05D005564 ORTHO05D006872 1.2e-83 313.9 269 59.9
Eucgr.A02932 Eucalyptus grandis HOM05D005564 ORTHO05D006872 1.6e-83 313.5 270 58.5
Thhalv10014247m.g Eutrema salsugineum HOM05D005564 ORTHO05D006872 1.6e-83 313.5 266 59.4
THA.LOC104825050 Tarenaya hassleriana HOM05D005564 ORTHO05D006872 2.1e-83 313.2 264 59.8
TPR.G39148 Trifolium pratense HOM05D005564 ORTHO05D006872 2.1e-83 313.2 256 62.5
Carub.0008s1121 Capsella rubella HOM05D005564 ORTHO05D006872 3.6e-83 312.4 269 58.7
Nn6g33765 Nelumbo nucifera HOM05D005564 ORTHO05D006872 4.7e-83 312.0 270 57.0
BraSC35t46004Z Brassica rapa HOM05D005564 ORTHO05D006872 8.0e-83 311.2 269 58.0
Cc00_g13030 Coffea canephora HOM05D005564 ORTHO05D006872 1.0e-82 310.8 261 59.8
BcaC04g20726 Brassica carinata HOM05D005564 ORTHO05D006872 1.4e-82 310.5 269 57.6
C09p39850 Brassica napus HOM05D005564 ORTHO05D006872 1.4e-82 310.5 269 57.6
BolC9t56884H Brassica oleracea HOM05D005564 ORTHO05D006872 1.4e-82 310.5 269 57.6
A10p07960 Brassica napus HOM05D005564 ORTHO05D006872 1.8e-82 310.1 269 57.6
CSS0008072 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 1.8e-82 310.1 261 60.2
Aa31LG3G7670 Aethionema arabicum HOM05D005564 ORTHO05D006872 2.3e-82 309.7 265 58.5
Phvul.008G143300 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 3.0e-82 309.3 258 60.1
AL8G25430 Arabidopsis lyrata HOM05D005564 ORTHO05D006872 4.0e-82 308.9 269 59.5
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 5.2e-82 308.5 256 60.5
MD01G1175500 Malus domestica HOM05D005564 ORTHO05D006872 6.8e-82 308.1 274 56.2
AT5G51170 Arabidopsis thaliana HOM05D005564 ORTHO05D006872 8.8e-82 307.8 269 57.6
MD07G1244900 Malus domestica HOM05D005564 ORTHO05D006872 1.2e-81 307.4 216 69.4
Migut.F00541 Erythranthe guttata HOM05D005564 ORTHO05D006872 1.5e-81 307.0 267 57.7
Lj1g0017373 Lotus japonicus HOM05D005564 ORTHO05D006872 1.5e-81 307.0 255 61.6
Lalb_Chr19g0127411 Lupinus albus HOM05D005564 ORTHO05D006872 2.0e-81 306.6 260 60.0
vmacro19959 Vaccinium macrocarpon HOM05D005564 ORTHO05D006872 2.0e-81 306.6 261 59.4
CSS0031726 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 4.4e-81 305.4 258 59.7
Glyma.01G079300 Glycine max HOM05D005564 ORTHO05D006872 4.4e-81 305.4 255 59.6
FAN03G1301 Fragaria x ananassa HOM05D005564 ORTHO05D006872 5.7e-81 305.1 243 62.6
FAN06G0976 Fragaria x ananassa HOM05D005564 ORTHO05D006872 5.7e-81 305.1 236 64.4
CARHR256880 Cardamine hirsuta HOM05D005564 ORTHO05D006872 1.3e-80 303.9 264 59.1
CAN.G309.23 Capsicum annuum HOM05D005564 ORTHO05D006872 1.7e-80 303.5 259 59.5
Medtr0053s0020 Medicago truncatula HOM05D005564 ORTHO05D006872 2.2e-80 303.1 255 60.4
BcaB08g35471 Brassica carinata HOM05D005564 ORTHO05D006872 2.8e-80 302.8 276 56.2
Phvul.005G030000 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 3.7e-80 302.4 258 58.5
Nitab4.5_0003973g0040 Nicotiana tabacum HOM05D005564 ORTHO05D006872 4.9e-80 302.0 263 58.2
SGA_v2.0_scaffold60G20845 Striga asiatica HOM05D005564 ORTHO05D006872 8.3e-80 301.2 262 57.3
arahy.Tifrunner.gnm1.ann1.2T0BFY Arachis hypogaea HOM05D005564 ORTHO05D006872 1.4e-79 300.4 260 59.2
PGR042G2925 Punica granatum HOM05D005564 ORTHO05D006872 1.4e-79 300.4 268 59.3
PGSC0003DMG400008328 Solanum tuberosum HOM05D005564 ORTHO05D006872 1.4e-79 300.4 258 58.5
AUR62008825 Chenopodium quinoa HOM05D005564 ORTHO05D006872 7.0e-79 298.1 204 69.1
Sopen03g024760 Solanum pennellii HOM05D005564 ORTHO05D006872 1.2e-78 297.4 260 57.7
CsaV3_5G005020 Cucumis sativus L. HOM05D005564 ORTHO05D006872 2.0e-78 296.6 262 56.9
MSTRG.27230 Avicennia marina HOM05D005564 ORTHO05D006872 2.7e-78 296.2 260 58.1
PSO063G5398 Papaver somniferum HOM05D005564 ORTHO05D006872 4.5e-78 295.4 264 55.3
AUR62025416 Chenopodium quinoa HOM05D005564 ORTHO05D006872 7.7e-78 294.7 204 68.1
ClCG01G004820 Citrullus lanatus HOM05D005564 ORTHO05D006872 7.7e-78 294.7 262 57.3
Solyc03g093880.3 Solanum lycopersicum HOM05D005564 ORTHO05D006872 1.7e-77 293.5 258 57.0
Ca_27086_v3 Cicer arietinum L. HOM05D005564 ORTHO05D006872 5.0e-77 292.0 247 60.7
Oeu030874.1 Olea europaea HOM05D005564 ORTHO05D006872 8.6e-77 291.2 262 56.1
SalBow3G4594 Salvia bowleyana HOM05D005564 ORTHO05D006872 1.2e-75 287.3 262 56.1
ECA233G5472 Erigeron canadensis HOM05D005564 ORTHO05D006872 2.8e-75 286.2 234 60.3
PSO017G2767 Papaver somniferum HOM05D005564 ORTHO05D006872 3.6e-75 285.8 258 54.3
ClCG09G010750 Citrullus lanatus HOM05D005564 ORTHO05D006872 2.3e-74 283.1 251 57.8
CDE02G1506 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 3.0e-74 282.7 259 52.1
SHI14145 Sapria himalayana HOM05D005564 ORTHO05D000001 4.0e-74 282.3 257 57.2
Peaxi162Scf00073g01727 Petunia axillaris HOM05D005564 ORTHO05D006872 2.0e-73 280.0 266 53.4
DCAR_020165 Daucus carota HOM05D005564 ORTHO05D006872 1.1e-71 274.2 261 55.6
PSO782G4004 Papaver somniferum HOM05D005564 ORTHO05D006872 1.6e-70 270.4 264 51.9
RcHm_v2.0_Chr1g0373311 Rosa chinensis HOM05D005564 ORTHO05D006872 1.0e-69 267.7 199 65.8
Rhsim03G0157100 Rhododendron simsii HOM05D005564 ORTHO05D006872 7.3e-68 261.5 264 52.7
Gorai.006G046400 Gossypium raimondii HOM05D005564 ORTHO05D006872 8.0e-67 258.1 138 92.8
ATR0188G007 Amborella trichopoda HOM05D005564 ORTHO05D006872 1.8e-66 256.9 247 53.0
Zm00001eb249040 Zea mays HOM05D005564 ORTHO05D006872 2.3e-66 256.5 257 49.8
FAN01G2799 Fragaria x ananassa HOM05D005564 ORTHO05D006872 3.1e-66 256.1 286 49.7
FAN10G0633 Fragaria x ananassa HOM05D005564 ORTHO05D006872 1.2e-65 254.2 199 63.3
MELO3C005454.2 Cucumis melo HOM05D005564 ORTHO05D006872 6.0e-62 241.9 196 61.2
unitig_21.g20780 Utricularia gibba HOM05D005564 ORTHO05D006872 3.3e-60 236.1 238 51.7
Os02g0651000 Oryza sativa ssp. japonica HOM05D005564 ORTHO05D006872 5.8e-57 225.3 185 57.3
SEGI_35477 Sequoiadendron giganteum HOM05D005564 ORTHO05D006872 1.1e-55 221.1 241 47.7
MD07G1245400 Malus domestica HOM05D005564 ORTHO05D006872 1.6e-54 217.2 159 69.2
Gohir.D02G135666 Gossypium hirsutum HOM05D005564 ORTHO05D006872 1.0e-53 214.5 109 96.3
Hma1.2p1_1014F.1_g247920 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 1.7e-53 213.8 181 60.8
MD07G1243300 Malus domestica HOM05D005564 ORTHO05D006872 1.1e-52 211.1 216 54.2
Sc19g0002740 Simmondsia chinensis HOM05D005564 ORTHO05D006872 2.5e-52 209.9 177 58.8
Nn6g32633 Nelumbo nucifera HOM05D005564 ORTHO05D006872 7.6e-49 198.4 183 53.0
Medtr0092s0090 Medicago truncatula HOM05D005564 ORTHO05D006872 1.3e-48 197.6 172 58.7
Nitab4.5_0000103g0380 Nicotiana tabacum HOM05D005564 ORTHO05D006872 3.7e-48 196.1 174 55.7
AagrBONN_evm.TU.Sc2ySwM_228.2399 Anthoceros agrestis HOM05D005564 ORTHO05D006872 1.3e-45 187.6 251 41.0
SMO145G0164 Selaginella moellendorffii HOM05D005564 ORTHO05D006872 3.3e-44 183.0 255 38.4
CANSAT78G0945 Cannabis sativa HOM05D005564 ORTHO05D006872 5.6e-44 182.2 212 48.1
Aqoxy3G02663 Aquilegia oxysepala HOM05D005564 ORTHO05D006872 7.6e-41 171.8 129 65.1
arahy.Tifrunner.gnm1.ann1.R6MN5Z Arachis hypogaea HOM05D005564 ORTHO05D006872 9.9e-41 171.4 252 41.7
Prupe.4G133000 Prunus persica HOM05D005564 ORTHO05D006872 1.3e-40 171.0 164 56.1
Dinv34539 Davidia involucrata HOM05D005564 ORTHO05D006872 1.6e-38 164.1 244 40.6
CAN.G1016.1 Capsicum annuum HOM05D005564 ORTHO05D006872 6.0e-38 162.2 117 65.8
CDE11G0070 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 6.0e-38 162.2 117 65.0
Pp3c13_1340 Physcomitrium patens HOM05D005564 ORTHO05D006872 2.8e-35 153.3 204 41.7
Rhsim03G0158000 Rhododendron simsii HOM05D005564 ORTHO05D006872 4.0e-34 149.4 204 43.1
Lsat_1_v5_gn_8_13861 Lactuca sativa HOM05D000071 ORTHO05D006872 5.8e-33 145.6 119 62.2
Gohir.D02G130966 Gossypium hirsutum HOM05D005564 ORTHO05D006872 1.1e-31 141.4 117 64.1
CBR_g31024 Chara braunii HOM05D005564 ORTHO05D006872 1.1e-26 124.8 285 33.7
Nn6g32636 Nelumbo nucifera HOM05D005564 ORTHO05D006872 4.5e-25 119.4 88 64.8
Psat3g166160 Pisum sativum HOM05D005564 ORTHO05D006872 9.6e-20 101.7 173 37.0
Psat3g164240 Pisum sativum HOM05D005564 ORTHO05D006872 3.1e-18 96.7 155 36.8
MCO11G677 Micromonas commoda HOM05D005564 ORTHO05D006872 3.9e-13 79.7 263 25.1
Cre01.g041900 Chlamydomonas reinhardtii HOM05D005564 ORTHO05D006872 2.1e-11 73.9 217 24.0
Mapoly0036s0004 Marchantia polymorpha HOM05D005564 ORTHO05D006872 3.1e-10 70.1 138 32.6
Aqoxy3G02664 Aquilegia oxysepala HOM05D000665 ORTHO05D000140 2.7e-06 57.0 38 65.8


User provided reference genes

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