Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.19G059900 Glycine max HOM05D005290 ORTHO05D006040 1.7e-31 138.7 69 100.0
Glyma.04G254900 Glycine max HOM05D005290 ORTHO05D006040 2.1e-21 105.1 56 91.1
VMungo1080G0256 Vigna mungo HOM05D005290 ORTHO05D006040 1.1e-20 102.8 56 89.3
Phvul.005G002000 Phaseolus vulgaris HOM05D005290 ORTHO05D006040 5.2e-20 100.5 56 89.3
Lj3g0002821 Lotus japonicus HOM05D005290 ORTHO05D006040 5.8e-19 97.1 56 83.9
TPR.G25526 Trifolium pratense HOM05D005290 ORTHO05D006040 5.8e-19 97.1 56 80.4
Medtr3g005810 Medicago truncatula HOM05D005290 ORTHO05D006040 1.3e-18 95.9 56 80.4
Ca_13983_v3 Cicer arietinum L. HOM05D005290 ORTHO05D006040 6.4e-18 93.6 56 80.4
arahy.Tifrunner.gnm1.ann1.0B02IH Arachis hypogaea HOM05D005290 ORTHO05D006040 8.4e-18 93.2 56 82.1
arahy.Tifrunner.gnm1.ann1.QF83TB Arachis hypogaea HOM05D005290 ORTHO05D006040 8.4e-18 93.2 56 82.1
Psat1g008120 Pisum sativum HOM05D005290 ORTHO05D006040 8.4e-18 93.2 56 80.4
CSS0003964 Camellia sinensis var. sinensis HOM05D005290 ORTHO05D006040 3.5e-16 87.8 57 73.7
CSS0033470 Camellia sinensis var. sinensis HOM05D005290 ORTHO05D006040 6.0e-16 87.0 56 75.0
COL.COLO4_24646 Corchorus olitorius HOM05D005290 ORTHO05D006040 3.9e-15 84.3 56 69.6
Duzib177G0512 Durio zibethinus HOM05D005290 ORTHO05D006040 3.9e-15 84.3 56 69.6
Aqoxy6G00108 Aquilegia oxysepala HOM05D005290 ORTHO05D006040 5.1e-15 84.0 56 73.2
Lalb_Chr07g0189291 Lupinus albus HOM05D005290 ORTHO05D006040 1.1e-14 82.8 58 69.0
Hund27128 Selenicereus undatus HOM05D005290 ORTHO05D006040 1.1e-14 82.8 56 67.9
Hund27133 Selenicereus undatus HOM05D005290 ORTHO05D006040 1.1e-14 82.8 56 67.9
Dinv41762 Davidia involucrata HOM05D005290 ORTHO05D006040 1.9e-14 82.0 56 69.6
Rhsim12G0006000 Rhododendron simsii HOM05D005290 ORTHO05D006040 3.3e-14 81.3 56 67.9
Atru.chr13.2376 Acer truncatum HOM05D005290 ORTHO05D006040 4.3e-14 80.9 56 69.6
PGR042G0738 Punica granatum HOM05D005290 ORTHO05D006040 4.3e-14 80.9 56 69.6
TAR381G0263 Trochodendron aralioides HOM05D005290 ORTHO05D006040 4.3e-14 80.9 56 67.9
Migut.C01329 Erythranthe guttata HOM05D005290 ORTHO05D006040 5.6e-14 80.5 56 69.6
Potri.019G078700 Populus trichocarpa HOM05D005290 ORTHO05D006040 5.6e-14 80.5 56 66.1
Sabra19G0089500 Salix brachista HOM05D005290 ORTHO05D006040 5.6e-14 80.5 56 66.1
Gohir.D13G122700 Gossypium hirsutum HOM05D005290 ORTHO05D006040 7.3e-14 80.1 56 67.9
Gorai.013G137700 Gossypium raimondii HOM05D005290 ORTHO05D006040 7.3e-14 80.1 56 67.9
AUR62004596 Chenopodium quinoa HOM05D005290 ORTHO05D006040 9.6e-14 79.7 56 67.9
vmacro00977 Vaccinium macrocarpon HOM05D005290 ORTHO05D006040 9.6e-14 79.7 56 67.9
Eucgr.F02988 Eucalyptus grandis HOM05D005290 ORTHO05D006040 1.3e-13 79.3 56 66.1
MBI03_g18676_MAGBIO Magnolia biondii HOM05D005290 ORTHO05D006040 1.3e-13 79.3 56 66.1
Cpa.g.sc50.56 Carica papaya HOM05D005290 ORTHO05D006040 1.6e-13 79.0 56 69.6
Thhalv10028465m.g Eutrema salsugineum HOM05D005290 ORTHO05D006040 1.6e-13 79.0 56 67.9
Gohir.A13G118900 Gossypium hirsutum HOM05D005290 ORTHO05D006040 1.6e-13 79.0 56 67.9
Sc01g0002020 Simmondsia chinensis HOM05D005290 ORTHO05D006040 1.6e-13 79.0 56 64.3
EL10Ac1g00141 Beta vulgaris HOM05D005290 ORTHO05D006040 2.1e-13 78.6 56 67.9
ECA232G1421 Erigeron canadensis HOM05D005290 ORTHO05D006040 2.1e-13 78.6 56 67.9
Manes.02G198901 Manihot esculenta HOM05D005290 ORTHO05D006040 2.1e-13 78.6 56 67.9
SGA_v2.0_scaffold118G32566 Striga asiatica HOM05D005290 ORTHO05D006040 2.1e-13 78.6 56 67.9
TWI59G0173 Tripterygium wilfordii HOM05D005290 ORTHO05D006040 2.1e-13 78.6 56 69.6
Nn1g08422 Nelumbo nucifera HOM05D005290 ORTHO05D006040 2.8e-13 78.2 56 69.6
AL6G42870 Arabidopsis lyrata HOM05D005290 ORTHO05D006040 3.6e-13 77.8 56 66.1
BcaC01g04730 Brassica carinata HOM05D005290 ORTHO05D006040 4.8e-13 77.4 56 66.1
A03p28460 Brassica napus HOM05D005290 ORTHO05D006040 4.8e-13 77.4 56 66.1
C03p34390 Brassica napus HOM05D005290 ORTHO05D006040 4.8e-13 77.4 56 66.1
BolC3t15749H Brassica oleracea HOM05D005290 ORTHO05D006040 4.8e-13 77.4 56 66.1
BraA03t12051Z Brassica rapa HOM05D005290 ORTHO05D006040 4.8e-13 77.4 56 66.1
Oeu059199.1 Olea europaea HOM05D005290 ORTHO05D006040 4.8e-13 77.4 56 64.3
RcHm_v2.0_Chr3g0494621 Rosa chinensis HOM05D005290 ORTHO05D006040 4.8e-13 77.4 58 65.5
SalBow7G4073 Salvia bowleyana HOM05D005290 ORTHO05D006040 4.8e-13 77.4 56 66.1
Thecc.08G192800 Theobroma cacao HOM05D005290 ORTHO05D006040 4.8e-13 77.4 56 64.3
Ciclev10019018m.g Citrus clementina HOM05D005290 ORTHO05D006040 6.2e-13 77.0 56 66.1
Lalb_Chr18g0049141 Lupinus albus HOM05D005290 ORTHO05D006040 6.2e-13 77.0 58 65.5
Sp6g08400 Schrenkiella parvula HOM05D005290 ORTHO05D006040 6.2e-13 77.0 56 66.1
FAN04G2711 Fragaria x ananassa HOM05D005290 ORTHO05D006040 8.1e-13 76.6 56 66.1
HanXRQChr09g0266431 Helianthus annuus HOM05D005290 ORTHO05D006040 8.1e-13 76.6 56 66.1
Lj7C285G2 Lonicera japonica HOM05D005290 ORTHO05D006040 8.1e-13 76.6 56 64.3
RcHm_v2.0_Chr7g0226931 Rosa chinensis HOM05D005290 ORTHO05D006040 8.1e-13 76.6 56 66.1
CARHR260140 Cardamine hirsuta HOM05D005290 ORTHO05D006040 1.1e-12 76.3 56 66.1
Cc10_g09470 Coffea canephora HOM05D005290 ORTHO05D006040 1.4e-12 75.9 56 66.1
Carub.0006s2769 Capsella rubella HOM05D005290 ORTHO05D006040 1.8e-12 75.5 56 66.1
Hma1.2p1_0004F.1_g003900 Hydrangea macrophylla HOM05D005290 ORTHO05D006040 1.8e-12 75.5 56 66.1
AT4G09140 Arabidopsis thaliana HOM05D005290 ORTHO05D006040 2.4e-12 75.1 56 66.1
MSTRG.25478 Avicennia marina HOM05D005290 ORTHO05D006040 2.4e-12 75.1 56 64.3
BcaB01g02803 Brassica carinata HOM05D005290 ORTHO05D006040 4.0e-12 74.3 56 64.3
Prupe.1G555900 Prunus persica HOM05D005290 ORTHO05D006040 4.0e-12 74.3 56 60.7
CiPaw.07G235300 Carya illinoinensis HOM05D005290 ORTHO05D006040 5.3e-12 73.9 56 62.5
FvH4_5g31560 Fragaria vesca HOM05D005290 ORTHO05D006040 5.3e-12 73.9 56 64.3
FAN18G4563 Fragaria x ananassa HOM05D005290 ORTHO05D006040 5.3e-12 73.9 56 64.3
CSS0016165 Camellia sinensis var. sinensis HOM05D005290 ORTHO05D006040 9.0e-12 73.2 49 71.4
HPP92_004622 Vanilla planifolia HOM05D005290 ORTHO05D006040 9.0e-12 73.2 57 61.4
Aa31LG9G14750 Aethionema arabicum HOM05D005290 ORTHO05D006040 1.5e-11 72.4 56 60.7
CsaV3_6G002720 Cucumis sativus L. HOM05D005290 ORTHO05D006040 1.5e-11 72.4 55 65.5
MD12G1033300 Malus domestica HOM05D005290 ORTHO05D006040 1.5e-11 72.4 56 64.3
PSO170G3966 Papaver somniferum HOM05D005290 ORTHO05D006040 2.0e-11 72.0 56 64.3
ClCG08G002460 Citrullus lanatus HOM05D005290 ORTHO05D006040 2.6e-11 71.6 55 65.5
Cfa012974 Carpinus fangiana HOM05D005290 ORTHO05D006040 3.4e-11 71.2 56 60.7
Ah.05g178620 Amaranthus hybridus HOM05D005290 ORTHO05D006040 4.5e-11 70.9 56 64.3
MELO3C025009.2 Cucumis melo HOM05D005290 ORTHO05D006040 4.5e-11 70.9 55 65.5
CANSAT80G2649 Cannabis sativa HOM05D005290 ORTHO05D006040 7.6e-11 70.1 56 60.7
Lsat_1_v5_gn_1_31200 Lactuca sativa HOM05D005290 ORTHO05D006040 7.6e-11 70.1 56 62.5
Sed0025467 Sechium edule HOM05D005290 ORTHO05D006040 7.6e-11 70.1 55 60.0
Sed0027029 Sechium edule HOM05D005290 ORTHO05D006040 7.6e-11 70.1 55 60.0
unitig_26.g9865 Utricularia gibba HOM05D005290 ORTHO05D006040 1.3e-10 69.3 56 60.7
PSO782G1799 Papaver somniferum HOM05D005290 ORTHO05D006040 4.9e-10 67.4 56 62.5
Solyc04g045660.4 Solanum lycopersicum HOM05D005290 ORTHO05D006040 6.4e-10 67.0 56 58.9
Sopen04g017660 Solanum pennellii HOM05D005290 ORTHO05D006040 6.4e-10 67.0 56 58.9
SHI12388 Sapria himalayana HOM05D005290 ORTHO05D006040 1.1e-09 66.2 56 55.4
CDE02G3660 Ceratophyllum demersum HOM05D005290 ORTHO05D006040 1.4e-09 65.9 56 57.1
Nitab4.5_0008566g0030 Nicotiana tabacum HOM05D005290 ORTHO05D006040 1.4e-09 65.9 57 59.6
Nitab4.5_0006434g0010 Nicotiana tabacum HOM05D005290 ORTHO05D006040 2.4e-09 65.1 57 59.6
Sed0005919 Sechium edule HOM05D005290 ORTHO05D006040 3.2e-09 64.7 52 57.7
CAN.G982.5 Capsicum annuum HOM05D005290 ORTHO05D006040 5.4e-09 63.9 58 58.6
MD14G1034100 Malus domestica HOM05D005290 ORTHO05D006040 7.1e-09 63.5 55 58.2
Os01g0958900 Oryza sativa ssp. japonica HOM05D005290 ORTHO05D006040 7.1e-09 63.5 56 57.1
Lsat_1_v5_gn_1_32860 Lactuca sativa HOM05D005290 ORTHO05D006040 1.6e-08 62.4 56 55.4
Zm00001eb362590 Zea mays HOM05D005290 ORTHO05D006040 6.0e-08 60.5 58 53.4
AagrBONN_evm.TU.Sc2ySwM_344.4012 Anthoceros agrestis HOM05D005290 ORTHO05D006040 1.0e-07 59.7 56 50.0
Peaxi162Scf00076g10023 Petunia axillaris HOM05D005290 ORTHO05D006040 1.5e-06 55.8 37 73.0
Zm00001eb258080 Zea mays HOM05D000837 ORTHO05D444011 1.5e-06 55.8 55 54.5
ATR1136G152 Amborella trichopoda HOM05D005290 ORTHO05D006040 4.3e-06 54.3 54 51.9
Mapoly0086s0067 Marchantia polymorpha HOM05D005290 ORTHO05D006040 5.6e-06 53.9 58 46.6


User provided reference genes

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