Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.18G003850 Glycine max HOM05D002182 ORTHO05D214443 9.1e-30 132.9 66 100.0
Medtr3g084800 Medicago truncatula HOM05D002182 ORTHO05D008382 3.3e-11 71.2 38 81.6
Glyma.11G253100 Glycine max HOM05D002182 ORTHO05D008382 7.3e-11 70.1 38 78.9
TPR.G18108 Trifolium pratense HOM05D002182 ORTHO05D008382 7.3e-11 70.1 38 78.9
VMungo1383G0373 Vigna mungo HOM05D002182 ORTHO05D008382 1.6e-10 68.9 38 76.3
Phvul.001G264300 Phaseolus vulgaris HOM05D002182 ORTHO05D008382 2.1e-10 68.6 38 73.7
Ca_16436_v3 Cicer arietinum L. HOM05D002182 ORTHO05D008382 2.8e-10 68.2 38 76.3
arahy.Tifrunner.gnm1.ann1.93YPU9 Arachis hypogaea HOM05D002182 ORTHO05D008382 3.6e-10 67.8 38 71.1
arahy.Tifrunner.gnm1.ann1.RWIY1E Arachis hypogaea HOM05D002182 ORTHO05D008382 3.6e-10 67.8 38 71.1
Lalb_Chr23g0278251 Lupinus albus HOM05D002182 ORTHO05D008382 1.0e-09 66.2 38 68.4
Lj6g0009713 Lotus japonicus HOM05D002182 ORTHO05D008382 2.3e-09 65.1 36 72.2
Psat5g097840 Pisum sativum HOM05D002182 ORTHO05D008382 6.8e-09 63.5 38 71.1
Manes.01G002901 Manihot esculenta HOM05D002182 ORTHO05D008382 1.5e-08 62.4 38 63.2
CANSAT78G1786 Cannabis sativa HOM05D002182 ORTHO05D008382 3.4e-08 61.2 38 63.2
AUR62018514 Chenopodium quinoa HOM05D002182 ORTHO05D008382 3.4e-08 61.2 47 57.4
Ah.04g149650 Amaranthus hybridus HOM05D002182 ORTHO05D008382 4.4e-08 60.8 40 65.0
ECA238G0923 Erigeron canadensis HOM05D002182 ORTHO05D008382 4.4e-08 60.8 38 65.8
PSO063G4176 Papaver somniferum HOM05D002182 ORTHO05D008382 4.4e-08 60.8 38 63.2
Sed0005840 Sechium edule HOM05D002182 ORTHO05D008382 4.4e-08 60.8 38 65.8
Hund19029 Selenicereus undatus HOM05D002182 ORTHO05D008382 4.4e-08 60.8 38 63.2
GSVIVG01031636001 Vitis vinifera HOM05D002182 ORTHO05D008382 4.4e-08 60.8 38 63.2
Migut.N00431 Erythranthe guttata HOM05D002182 ORTHO05D008382 5.8e-08 60.5 55 45.5
Duzib212G0342 Durio zibethinus HOM05D002182 ORTHO05D008382 7.5e-08 60.1 38 65.8
HanXRQChr14g0436751 Helianthus annuus HOM05D002182 ORTHO05D008382 7.5e-08 60.1 38 65.8
Atru.chr3.1773 Acer truncatum HOM05D002182 ORTHO05D008382 9.8e-08 59.7 48 50.0
Sabra14G0112200 Salix brachista HOM05D002182 ORTHO05D008382 9.8e-08 59.7 38 60.5
vmacro00427 Vaccinium macrocarpon HOM05D002182 ORTHO05D008382 9.8e-08 59.7 34 70.6
Lsat_1_v5_gn_2_49140 Lactuca sativa HOM05D002182 ORTHO05D008382 1.3e-07 59.3 38 65.8
Oeu034295.1 Olea europaea HOM05D002182 ORTHO05D008382 1.3e-07 59.3 38 60.5
PGR142G0868 Punica granatum HOM05D002182 ORTHO05D008382 1.3e-07 59.3 38 68.4
Potri.014G148800 Populus trichocarpa HOM05D002182 ORTHO05D008382 1.7e-07 58.9 38 63.2
Gohir.A10G131800 Gossypium hirsutum HOM05D002182 ORTHO05D008382 2.2e-07 58.5 38 60.5
Gorai.011G150100 Gossypium raimondii HOM05D002182 ORTHO05D008382 2.2e-07 58.5 38 60.5
QL06p028465 Quercus lobata HOM05D002182 ORTHO05D008382 2.2e-07 58.5 38 60.5
Sc19g0007480 Simmondsia chinensis HOM05D002182 ORTHO05D008382 2.2e-07 58.5 38 63.2
Thecc.04G190100 Theobroma cacao HOM05D002182 ORTHO05D008382 2.2e-07 58.5 38 63.2
TAR365G1258 Trochodendron aralioides HOM05D002182 ORTHO05D008382 2.2e-07 58.5 38 60.5
MD04G1023600 Malus domestica HOM05D002182 ORTHO05D008382 2.9e-07 58.2 38 60.5
Rhsim09G0063400 Rhododendron simsii HOM05D002182 ORTHO05D008382 2.9e-07 58.2 48 56.2
CSS0003059 Camellia sinensis var. sinensis HOM05D002182 ORTHO05D008382 3.7e-07 57.8 38 60.5
Haze_11692 Corylus avellana HOM05D002182 ORTHO05D008382 3.7e-07 57.8 38 60.5
Dinv32179 Davidia involucrata HOM05D002182 ORTHO05D008382 4.9e-07 57.4 38 60.5
Pp3c8_22620 Physcomitrium patens HOM05D002182 ORTHO05D008382 4.9e-07 57.4 39 59.0
EL10Ac3g07419 Beta vulgaris HOM05D002182 ORTHO05D008382 6.4e-07 57.0 32 71.9
Gohir.D10G135200 Gossypium hirsutum HOM05D002182 ORTHO05D008382 6.4e-07 57.0 53 49.1
CDE05G0942 Ceratophyllum demersum HOM05D002182 ORTHO05D008382 8.3e-07 56.6 38 63.2
DCAR_024119 Daucus carota HOM05D002182 ORTHO05D008382 8.3e-07 56.6 36 63.9
THA.LOC104800954 Tarenaya hassleriana HOM05D002182 ORTHO05D008382 8.3e-07 56.6 38 57.9
TWI63G1391 Tripterygium wilfordii HOM05D002182 ORTHO05D008382 8.3e-07 56.6 38 57.9
COL.COLO4_35972 Corchorus olitorius HOM05D002182 ORTHO05D008382 1.1e-06 56.2 38 60.5
Nn1g08084 Nelumbo nucifera HOM05D002182 ORTHO05D008382 1.1e-06 56.2 38 63.2
Cpa.g.sc157.4 Carica papaya HOM05D002182 ORTHO05D008382 1.4e-06 55.8 38 55.3
Eucgr.L00646 Eucalyptus grandis HOM05D002182 ORTHO05D008382 1.4e-06 55.8 37 56.8
CiPaw.01G112100 Carya illinoinensis HOM05D002182 ORTHO05D008382 1.9e-06 55.5 38 60.5
Thhalv10016222m.g Eutrema salsugineum HOM05D002182 ORTHO05D008382 1.9e-06 55.5 42 54.8
AT2G32000 Arabidopsis thaliana HOM05D002182 ORTHO05D008382 2.4e-06 55.1 38 57.9
ClCG05G007130 Citrullus lanatus HOM05D002182 ORTHO05D008382 2.4e-06 55.1 38 57.9
Cc03_g09640 Coffea canephora HOM05D002182 ORTHO05D008382 2.4e-06 55.1 38 55.3
CsaV3_3G015890 Cucumis sativus L. HOM05D002182 ORTHO05D008382 2.4e-06 55.1 38 57.9
Nitab4.5_0000309g0290 Nicotiana tabacum HOM05D002182 ORTHO05D008382 2.4e-06 55.1 33 66.7
Nitab4.5_0004869g0010 Nicotiana tabacum HOM05D002182 ORTHO05D008382 2.4e-06 55.1 33 66.7
Aqoxy2G03986 Aquilegia oxysepala HOM05D002182 ORTHO05D008382 4.1e-06 54.3 38 57.9
AL4G27360 Arabidopsis lyrata HOM05D002182 ORTHO05D008382 4.1e-06 54.3 38 55.3
SMO347G0440 Selaginella moellendorffii HOM05D002182 ORTHO05D008382 4.1e-06 54.3 37 56.8
SEGI_13382 Sequoiadendron giganteum HOM05D002182 ORTHO05D008382 4.1e-06 54.3 39 56.4
AagrBONN_evm.TU.Sc2ySwM_228.2256 Anthoceros agrestis HOM05D002182 ORTHO05D008382 7.0e-06 53.5 39 53.8
Mapoly0014s0219 Marchantia polymorpha HOM05D002182 ORTHO05D008382 7.0e-06 53.5 39 53.8
SGA_v2.0_scaffold128G34129 Striga asiatica HOM05D002182 ORTHO05D008382 7.0e-06 53.5 38 50.0
CARHR125770 Cardamine hirsuta HOM05D002182 ORTHO05D008382 9.2e-06 53.1 38 57.9
Prupe.1G173400 Prunus persica HOM05D002182 ORTHO05D008382 9.2e-06 53.1 36 55.6


User provided reference genes

Program Settings