Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.17G123700 Glycine max HOM05D000251 ORTHO05D007889 0.0e+00 1819.7 958 100.0
Glyma.05G015200 Glycine max HOM05D000251 ORTHO05D007889 0.0e+00 1582.8 976 87.6
VMungo1215G2774 Vigna mungo HOM05D000251 ORTHO05D007889 0.0e+00 1468.0 983 81.3
Lj4g0022759 Lotus japonicus HOM05D000251 ORTHO05D007889 0.0e+00 1355.9 965 75.8
Lalb_Chr12g0197521 Lupinus albus HOM05D000251 ORTHO05D007889 0.0e+00 1354.3 961 76.3
Psat4g045640 Pisum sativum HOM05D000251 ORTHO05D007889 0.0e+00 1341.3 984 73.3
Medtr4g112420 Medicago truncatula HOM05D000251 ORTHO05D007889 0.0e+00 1334.7 960 75.9
Ca_02522_v3 Cicer arietinum L. HOM05D000251 ORTHO05D007889 0.0e+00 1320.4 918 77.0
arahy.Tifrunner.gnm1.ann1.MAJ7P0 Arachis hypogaea HOM05D000251 ORTHO05D007889 0.0e+00 1315.1 1010 71.6
arahy.Tifrunner.gnm1.ann1.ESZ5GR Arachis hypogaea HOM05D000251 ORTHO05D007889 0.0e+00 1313.9 1003 71.8
TPR.G2793 Trifolium pratense HOM05D000251 ORTHO05D007889 0.0e+00 1305.8 916 76.2
Phvul.003G179400 Phaseolus vulgaris HOM05D000251 ORTHO05D007889 0.0e+00 1295.0 889 78.4
CiPaw.15G123200 Carya illinoinensis HOM05D000251 ORTHO05D007889 3.0e-310 1068.5 923 62.8
QL10p022316 Quercus lobata HOM05D000251 ORTHO05D007889 1.1e-307 1060.1 919 62.6
Cfa019845 Carpinus fangiana HOM05D000251 ORTHO05D007889 4.1e-307 1058.1 998 59.4
Dinv36870 Davidia involucrata HOM05D000251 ORTHO05D007889 1.1e-302 1043.5 848 64.3
Thecc.03G114900 Theobroma cacao HOM05D000251 ORTHO05D007889 2.4e-299 1032.3 949 61.3
Prupe.5G214300 Prunus persica HOM05D000251 ORTHO05D007889 1.5e-296 1023.1 916 60.2
RcHm_v2.0_Chr7g0184311 Rosa chinensis HOM05D000251 ORTHO05D007889 1.5e-296 1023.1 912 60.6
Duzib205G0552 Durio zibethinus HOM05D000251 ORTHO05D007889 6.2e-295 1017.7 923 60.7
COL.COLO4_32187 Corchorus olitorius HOM05D000251 ORTHO05D007889 1.4e-294 1016.5 924 61.3
Atru.chr9.705 Acer truncatum HOM05D000251 ORTHO05D007889 2.3e-294 1015.8 892 60.9
FAN18G2230 Fragaria x ananassa HOM05D000251 ORTHO05D007889 2.3e-294 1015.8 861 61.7
MD14G1219700 Malus domestica HOM05D000251 ORTHO05D007889 1.5e-293 1013.1 920 59.5
Lj9C433G11 Lonicera japonica HOM05D000251 ORTHO05D007889 3.4e-293 1011.9 885 61.0
FvH4_5g12911 Fragaria vesca HOM05D000251 ORTHO05D007889 1.3e-292 1010.0 912 59.5
CSS0040641 Camellia sinensis var. sinensis HOM05D000251 ORTHO05D007889 3.7e-292 1008.4 968 58.0
FAN13G2548 Fragaria x ananassa HOM05D000251 ORTHO05D000414 8.3e-292 1007.3 886 60.8
Rhsim08G0149100 Rhododendron simsii HOM05D000251 ORTHO05D007889 4.6e-290 1001.5 961 57.3
MD06G1209200 Malus domestica HOM05D000251 ORTHO05D007889 3.0e-289 998.8 921 59.0
CANSAT80G2803 Cannabis sativa HOM05D000251 ORTHO05D007889 6.6e-289 997.7 896 59.9
GSVIVG01008206001 Vitis vinifera HOM05D000251 ORTHO05D007889 8.6e-289 997.3 963 58.7
Ciclev10018692m.g Citrus clementina HOM05D000251 ORTHO05D007889 1.1e-288 996.9 911 60.3
Potri.012G058100 Populus trichocarpa HOM05D000251 ORTHO05D007889 1.1e-288 996.9 921 59.4
Sed0011411 Sechium edule HOM05D000251 ORTHO05D007889 2.1e-287 992.6 968 57.7
Nn4g23656 Nelumbo nucifera HOM05D000251 ORTHO05D007889 1.2e-285 986.9 965 57.3
Actinidia31039 Actinidia chinensis HOM05D000251 ORTHO05D007889 7.6e-285 984.2 966 59.0
CsaV3_1G003490 Cucumis sativus L. HOM05D000251 ORTHO05D007889 1.7e-284 983.0 917 58.3
Gorai.003G106300 Gossypium raimondii HOM05D000251 ORTHO05D007889 1.7e-284 983.0 936 58.2
PGR044G2008 Punica granatum HOM05D000251 ORTHO05D007889 6.4e-284 981.1 821 63.6
Cc04_g07720 Coffea canephora HOM05D000251 ORTHO05D007889 5.4e-283 978.0 819 61.9
Gohir.D03G100900 Gossypium hirsutum HOM05D000251 ORTHO05D007889 7.1e-283 977.6 939 58.1
TAR622G0769 Trochodendron aralioides HOM05D000251 ORTHO05D007889 4.6e-282 974.9 989 55.9
Nitab4.5_0000646g0050 Nicotiana tabacum HOM05D000251 ORTHO05D007889 3.9e-281 971.8 968 55.7
TWI81G0067 Tripterygium wilfordii HOM05D000251 ORTHO05D007889 3.9e-281 971.8 976 58.2
Gohir.A03G074400 Gossypium hirsutum HOM05D000251 ORTHO05D007889 5.1e-281 971.5 935 57.4
Haze_18572 Corylus avellana HOM05D000251 ORTHO05D007889 6.6e-281 971.1 909 59.1
FAN18G3790 Fragaria x ananassa HOM05D000251 ORTHO05D007889 2.1e-279 966.1 945 55.9
CAN.G781.3 Capsicum annuum HOM05D000251 ORTHO05D007889 4.7e-279 964.9 903 58.8
Sabra12G0041800 Salix brachista HOM05D000251 ORTHO05D007889 8.1e-279 964.1 1002 55.3
Peaxi162Scf00017g03036 Petunia axillaris HOM05D000251 ORTHO05D007889 5.8e-277 958.0 917 58.0
Nitab4.5_0004342g0020 Nicotiana tabacum HOM05D000251 ORTHO05D007889 2.4e-275 952.6 926 56.9
DCAR_015126 Daucus carota HOM05D000251 ORTHO05D007889 1.1e-272 943.7 966 56.6
EL10Ac5g11229 Beta vulgaris HOM05D000251 ORTHO05D007889 9.0e-270 934.1 899 55.8
Manes.05G117300 Manihot esculenta HOM05D000251 ORTHO05D007889 2.6e-269 932.6 743 66.5
Eucgr.K02644 Eucalyptus grandis HOM05D000251 ORTHO05D007889 7.6e-269 931.0 912 57.0
Solyc03g114410.3 Solanum lycopersicum HOM05D000251 ORTHO05D007889 9.9e-269 930.6 900 57.1
Sopen03g033510 Solanum pennellii HOM05D000251 ORTHO05D007889 6.4e-268 927.9 902 57.4
ClCG06G015150 Citrullus lanatus HOM05D000251 ORTHO05D007889 5.4e-267 924.9 987 55.2
HanXRQChr05g0157761 Helianthus annuus HOM05D000251 ORTHO05D007889 2.3e-265 919.5 917 56.5
Lsat_1_v5_gn_5_24161 Lactuca sativa HOM05D000251 ORTHO05D007889 1.9e-264 916.4 864 58.1
Aqoxy3G00409 Aquilegia oxysepala HOM05D000251 ORTHO05D007889 2.5e-264 916.0 922 56.2
Carub.0006s2087 Capsella rubella HOM05D000251 ORTHO05D007889 2.1e-263 912.9 802 61.2
Sp2g24040 Schrenkiella parvula HOM05D000251 ORTHO05D007889 2.8e-263 912.5 873 58.0
Hund02531 Selenicereus undatus HOM05D000251 ORTHO05D007889 4.8e-263 911.8 855 57.9
BraA03t13769Z Brassica rapa HOM05D000251 ORTHO05D007889 2.4e-262 909.4 825 60.6
AUR62036928 Chenopodium quinoa HOM05D000251 ORTHO05D007889 1.2e-261 907.1 832 59.1
AL6G34270 Arabidopsis lyrata HOM05D000251 ORTHO05D007889 1.5e-261 906.7 802 61.5
A03p46430 Brassica napus HOM05D000251 ORTHO05D007889 2.6e-261 906.0 825 60.4
MELO3C017274.2 Cucumis melo HOM05D000251 ORTHO05D007889 1.7e-260 903.3 976 55.0
ECA246G2449 Erigeron canadensis HOM05D000251 ORTHO05D007889 1.7e-260 903.3 859 58.3
AT5G23080 Arabidopsis thaliana HOM05D000251 ORTHO05D007889 2.2e-260 902.9 797 61.5
SGA_v2.0_scaffold283G46981 Striga asiatica HOM05D000251 ORTHO05D007889 2.3e-257 892.9 965 54.0
vmacro17646 Vaccinium macrocarpon HOM05D000251 ORTHO05D007889 6.7e-257 891.3 963 51.9
THA.LOC104819385 Tarenaya hassleriana HOM05D000251 ORTHO05D007889 1.1e-256 890.6 820 60.2
C07p44450 Brassica napus HOM05D000251 ORTHO05D007889 5.6e-256 888.3 962 55.1
BolC7t44966H Brassica oleracea HOM05D000251 ORTHO05D007889 9.6e-256 887.5 962 55.1
Migut.G01282 Erythranthe guttata HOM05D000251 ORTHO05D007889 3.7e-255 885.6 903 55.0
Aa31LG11G2570 Aethionema arabicum HOM05D000251 ORTHO05D007889 5.8e-253 878.2 837 58.1
BcaC04g23479 Brassica carinata HOM05D000251 ORTHO05D007889 5.8e-253 878.2 804 60.2
BolC9t53705H Brassica oleracea HOM05D000251 ORTHO05D007889 5.8e-253 878.2 804 60.2
C09p07920 Brassica napus HOM05D000251 ORTHO05D007889 3.9e-249 865.5 804 59.6
Thhalv10003608m.g Eutrema salsugineum HOM05D000251 ORTHO05D007889 8.7e-249 864.4 871 55.8
Cpa.g.sc13.78 Carica papaya HOM05D000251 ORTHO05D007889 4.3e-248 862.1 743 61.1
BraA09t36355Z Brassica rapa HOM05D000251 ORTHO05D007889 1.3e-247 860.5 980 53.7
AUR62032169 Chenopodium quinoa HOM05D000251 ORTHO05D007889 1.3e-247 860.5 827 57.1
PSO017G5760 Papaver somniferum HOM05D000251 ORTHO05D007889 7.6e-245 851.3 906 53.4
A09p07070 Brassica napus HOM05D000251 ORTHO05D007889 1.4e-243 847.0 975 53.2
BcaB04g19889 Brassica carinata HOM05D000251 ORTHO05D007889 1.9e-243 846.7 844 56.8
Sc10g0009620 Simmondsia chinensis HOM05D000251 ORTHO05D007889 2.2e-239 833.2 743 59.2
Rhsim08G0139200 Rhododendron simsii HOM05D000251 ORTHO05D007889 4.1e-238 828.9 695 61.7
PSO478G4362 Papaver somniferum HOM05D000251 ORTHO05D007889 3.4e-237 825.9 933 51.9
CDE08G0099 Ceratophyllum demersum HOM05D000251 ORTHO05D007889 9.7e-232 807.7 912 50.0
SalBow2G1753 Salvia bowleyana HOM05D000251 ORTHO05D007889 5.0e-228 795.4 842 53.7
unitig_736.g22471 Utricularia gibba HOM05D000251 ORTHO05D007889 6.5e-220 768.5 806 54.8
ATR0723G093 Amborella trichopoda HOM05D000251 ORTHO05D007889 5.5e-219 765.4 938 48.8
Os06g0489200 Oryza sativa ssp. japonica HOM05D000251 ORTHO05D007889 5.3e-214 748.8 905 48.1
Ah.02g114420 Amaranthus hybridus HOM05D000251 ORTHO05D007889 8.3e-207 724.9 826 50.8
AagrBONN_evm.TU.Sc2ySwM_344.5190 Anthoceros agrestis HOM05D000251 ORTHO05D007889 6.0e-165 585.9 886 43.2
Nn039s41709 Nelumbo nucifera HOM05D000251 ORTHO05D007889 5.3e-161 572.8 509 59.3
Pp3c6_280 Physcomitrium patens HOM05D000251 ORTHO05D007889 1.6e-154 551.2 941 41.8
SMO358G0348 Selaginella moellendorffii HOM05D000251 ORTHO05D007889 4.8e-146 523.1 842 40.3
Mapoly0043s0012 Marchantia polymorpha HOM05D000251 ORTHO05D007889 2.3e-140 504.2 843 40.6
HPP92_003115 Vanilla planifolia HOM05D000251 ORTHO05D007889 1.4e-137 495.0 674 47.8
CARHR190450 Cardamine hirsuta HOM05D000251 ORTHO05D007889 1.9e-134 484.6 512 54.9
SEGI_18733 Sequoiadendron giganteum HOM05D000251 ORTHO05D007889 3.2e-118 430.6 440 52.7
Hma1.2p1_0595F.1_g186110 Hydrangea macrophylla HOM05D000251 ORTHO05D007889 5.0e-111 406.8 353 58.4
Zm00001eb382170 Zea mays HOM05D000251 ORTHO05D007889 1.1e-94 352.4 507 44.4
Hma1.2p1_0595F.1_g186100 Hydrangea macrophylla HOM05D000251 ORTHO05D007889 2.2e-90 338.2 220 76.8
CBR_g57132 Chara braunii HOM05D000251 ORTHO05D007889 7.7e-88 329.7 1006 31.0
Psat4g067080 Pisum sativum HOM05D000251 ORTHO05D007889 1.5e-59 235.7 234 56.0
MCO14G468 Micromonas commoda HOM05D000251 ORTHO05D007889 2.2e-58 231.9 743 29.2
BcaC06g33188 Brassica carinata HOM05D000251 ORTHO05D007889 2.4e-44 185.3 293 44.7
Cre13.g568700 Chlamydomonas reinhardtii HOM05D000251 ORTHO05D007889 1.5e-43 182.6 279 38.0
SHI18972 Sapria himalayana HOM05D000251 ORTHO05D007889 3.4e-43 181.4 106 81.1
Actinidia16061 Actinidia chinensis HOM05D000251 ORTHO05D007889 5.8e-43 180.6 201 54.2
Ah.02g114430 Amaranthus hybridus HOM05D000169 ORTHO05D000542 3.8e-42 177.9 106 80.2
CiPaw.15G123400 Carya illinoinensis HOM05D000251 ORTHO05D007889 2.8e-29 135.2 88 73.9
Actinidia16060 Actinidia chinensis HOM05D000251 ORTHO05D007889 6.9e-28 130.6 149 48.3
GSVIVG01008210001 Vitis vinifera HOM05D000251 ORTHO05D007889 1.1e-20 106.7 73 68.5
Cfa026338 Carpinus fangiana HOM05D000251 ORTHO05D007889 4.5e-19 101.3 807 25.5
Rhsim08G0139300 Rhododendron simsii HOM05D000251 ORTHO05D007889 7.6e-19 100.5 322 36.0
Hma1.2p1_0690F.1_g203840 Hydrangea macrophylla HOM05D000251 ORTHO05D007889 3.8e-10 71.6 46 71.7
CsaV3_5G010440 Cucumis sativus L. HOM05D005511 ORTHO05D006616 3.2e-09 68.6 92 38.0
MELO3C003615.2 Cucumis melo HOM05D005511 ORTHO05D006616 2.7e-08 65.5 95 37.9
Atru.chr7.2702 Acer truncatum HOM05D005511 ORTHO05D006616 3.6e-08 65.1 87 37.9
MELO3C018377.2 Cucumis melo HOM05D005511 ORTHO05D006616 4.6e-08 64.7 95 36.8
MSTRG.966 Avicennia marina HOM05D005511 ORTHO05D006616 6.1e-08 64.3 84 36.9
Dinv37487 Davidia involucrata HOM05D005511 ORTHO05D006616 1.4e-07 63.2 91 38.5
MD15G1105800 Malus domestica HOM05D005511 ORTHO05D006616 1.4e-07 63.2 89 39.3
Potri.006G279800 Populus trichocarpa HOM05D005511 ORTHO05D006616 3.9e-07 61.6 60 46.7
Sabra06G0216800 Salix brachista HOM05D005511 ORTHO05D006616 3.9e-07 61.6 60 46.7
vmacro03505 Vaccinium macrocarpon HOM05D005511 ORTHO05D006616 3.9e-07 61.6 64 43.8
COL.COLO4_18647 Corchorus olitorius HOM05D005511 ORTHO05D006616 6.7e-07 60.8 88 37.5
QL12p025629 Quercus lobata HOM05D005511 ORTHO05D006616 6.7e-07 60.8 66 43.9
Sabra18G0005200 Salix brachista HOM05D005511 ORTHO05D006616 6.7e-07 60.8 60 45.0
MD08G1126000 Malus domestica HOM05D005511 ORTHO05D006616 8.8e-07 60.5 113 34.5
Pp3c17_14220 Physcomitrium patens HOM05D005511 ORTHO05D006616 8.8e-07 60.5 65 40.0
Gorai.010G125400 Gossypium raimondii HOM05D005511 ORTHO05D006616 1.5e-06 59.7 89 37.1
CANSAT25G2351 Cannabis sativa HOM05D005511 ORTHO05D006616 2.0e-06 59.3 63 47.6
Ca_09096_v3 Cicer arietinum L. HOM05D005511 ORTHO05D006616 2.0e-06 59.3 88 36.4
CiPaw.07G210700 Carya illinoinensis HOM05D005511 ORTHO05D006616 2.5e-06 58.9 90 37.8
Gohir.A06G108200 Gossypium hirsutum HOM05D005511 ORTHO05D006616 2.5e-06 58.9 81 38.3
Psat5g176520 Pisum sativum HOM05D005511 ORTHO05D006616 2.5e-06 58.9 88 34.1
HPP92_005904 Vanilla planifolia HOM05D005511 ORTHO05D006616 2.5e-06 58.9 64 42.2
Ciclev10014516m.g Citrus clementina HOM05D005511 ORTHO05D006616 3.3e-06 58.5 61 42.6
CBR_g29483 Chara braunii HOM05D000785 ORTHO05D006616 4.3e-06 58.2 70 40.0
Thecc.09G000500 Theobroma cacao HOM05D005511 ORTHO05D006616 4.3e-06 58.2 81 37.0
Eucgr.H04509 Eucalyptus grandis HOM05D005511 ORTHO05D006616 5.7e-06 57.8 88 37.5
Prupe.1G457600 Prunus persica HOM05D005511 ORTHO05D006616 7.4e-06 57.4 78 42.3
Potri.018G002000 Populus trichocarpa HOM05D005511 ORTHO05D006616 9.7e-06 57.0 89 36.0
HPP92_003096 Vanilla planifolia HOM05D000251 ORTHO05D007889 9.7e-06 57.0 133 35.3


User provided reference genes

Program Settings