Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.16G041400 Glycine max HOM05D004151 ORTHO05D004775 4.4e-72 275.0 181 100.0
Glyma.19G110900 Glycine max HOM05D004151 ORTHO05D004775 1.7e-60 236.5 194 85.1
Sed0025621 Sechium edule HOM05D004151 ORTHO05D004775 7.6e-56 221.1 170 81.2
TPR.G5895 Trifolium pratense HOM05D004151 ORTHO05D004775 1.3e-55 220.3 146 86.3
Lalb_Chr14g0364491 Lupinus albus HOM05D004151 ORTHO05D004775 8.4e-55 217.6 173 73.4
CsaV3_4G013280 Cucumis sativus L. HOM05D004151 ORTHO05D004775 1.1e-54 217.2 168 81.0
Manes.08G144000 Manihot esculenta HOM05D004151 ORTHO05D004775 4.2e-54 215.3 150 84.7
Lalb_Chr22g0359191 Lupinus albus HOM05D004151 ORTHO05D004775 7.1e-54 214.5 181 70.7
Phvul.001G110400 Phaseolus vulgaris HOM05D004151 ORTHO05D004775 9.2e-54 214.2 155 80.0
Aqoxy1G00486 Aquilegia oxysepala HOM05D004151 ORTHO05D004775 1.2e-53 213.8 146 84.2
Lj1g0021266 Lotus japonicus HOM05D004151 ORTHO05D004775 1.6e-53 213.4 197 72.1
MELO3C008801.2 Cucumis melo HOM05D004151 ORTHO05D004775 1.0e-52 210.7 169 83.4
SGA_v2.0_scaffold274G46513 Striga asiatica HOM05D004151 ORTHO05D004775 1.3e-52 210.3 159 81.1
Manes.09G141400 Manihot esculenta HOM05D004151 ORTHO05D004775 1.7e-52 209.9 150 84.0
Psat0s1971g0280 Pisum sativum HOM05D004151 ORTHO05D004775 2.3e-52 209.5 151 84.1
TAR369G0512 Trochodendron aralioides HOM05D004151 ORTHO05D004775 2.3e-52 209.5 157 82.2
Cfa016441 Carpinus fangiana HOM05D004151 ORTHO05D004775 3.0e-52 209.1 185 70.8
VMungo1383G2477 Vigna mungo HOM05D004151 ORTHO05D004775 3.0e-52 209.1 149 86.6
Haze_19418 Corylus avellana HOM05D004151 ORTHO05D004775 5.1e-52 208.4 185 76.2
Haze_19447 Corylus avellana HOM05D004151 ORTHO05D004775 5.1e-52 208.4 185 76.2
ClCG04G005310 Citrullus lanatus HOM05D004151 ORTHO05D004775 6.6e-52 208.0 152 82.9
Medtr7g085640 Medicago truncatula HOM05D004151 ORTHO05D004775 8.7e-52 207.6 153 81.0
PGR142G1491 Punica granatum HOM05D004151 ORTHO05D004775 8.7e-52 207.6 146 84.9
Atru.chr5.2062 Acer truncatum HOM05D004151 ORTHO05D004775 2.5e-51 206.1 170 72.4
Duzib106G1401 Durio zibethinus HOM05D004151 ORTHO05D004775 2.5e-51 206.1 144 84.0
Nitab4.5_0007542g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 2.5e-51 206.1 149 77.2
TWI32G1207 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 2.5e-51 206.1 154 81.8
GSVIVG01033401001 Vitis vinifera HOM05D004151 ORTHO05D004775 2.5e-51 206.1 150 78.7
Solyc10g078540.3 Solanum lycopersicum HOM05D004151 ORTHO05D004775 3.3e-51 205.7 149 80.5
Sopen10g029190 Solanum pennellii HOM05D004151 ORTHO05D004775 3.3e-51 205.7 149 80.5
Sp6g26140 Schrenkiella parvula HOM05D004151 ORTHO05D004775 4.3e-51 205.3 146 84.2
arahy.Tifrunner.gnm1.ann1.JDMG7B Arachis hypogaea HOM05D004151 ORTHO05D004775 5.6e-51 204.9 170 82.4
arahy.Tifrunner.gnm1.ann1.PLSY77 Arachis hypogaea HOM05D004151 ORTHO05D004775 5.6e-51 204.9 170 82.4
Migut.J01888 Erythranthe guttata HOM05D004151 ORTHO05D004775 7.3e-51 204.5 146 82.2
Peaxi162Scf00003g04832 Petunia axillaris HOM05D004151 ORTHO05D004775 7.3e-51 204.5 153 74.5
MSTRG.19934 Avicennia marina HOM05D004151 ORTHO05D004775 9.6e-51 204.1 152 77.6
Nitab4.5_0009048g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 1.6e-50 203.4 149 77.9
Sed0023399 Sechium edule HOM05D004151 ORTHO05D004775 1.6e-50 203.4 151 84.8
QL07p019530 Quercus lobata HOM05D004151 ORTHO05D004775 2.1e-50 203.0 153 81.0
PGSC0003DMG400008366 Solanum tuberosum HOM05D004151 ORTHO05D004775 2.1e-50 203.0 149 79.2
Atru.chr5.2060 Acer truncatum HOM05D004151 ORTHO05D004775 3.6e-50 202.2 170 71.8
Hma1.2p1_0134F.1_g061640 Hydrangea macrophylla HOM05D004151 ORTHO05D004775 4.7e-50 201.8 158 79.7
CiPaw.09G001900 Carya illinoinensis HOM05D004151 ORTHO05D004775 6.2e-50 201.4 150 80.7
Cc06_g22960 Coffea canephora HOM05D004151 ORTHO05D004775 6.2e-50 201.4 147 77.6
THA.LOC104827273 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 6.2e-50 201.4 143 84.6
Thecc.05G294500 Theobroma cacao HOM05D004151 ORTHO05D004775 6.2e-50 201.4 144 83.3
Ah.06g191800 Amaranthus hybridus HOM05D004151 ORTHO05D004775 8.1e-50 201.1 167 76.0
A01p41270 Brassica napus HOM05D004151 ORTHO05D004775 8.1e-50 201.1 166 78.9
BNapus_Darmor_BZH_scaffold_78p00440 Brassica napus HOM05D004151 ORTHO05D004775 8.1e-50 201.1 166 78.9
CDE06G0359 Ceratophyllum demersum HOM05D004151 ORTHO05D004775 8.1e-50 201.1 148 79.1
Sabra13G0051900 Salix brachista HOM05D004151 ORTHO05D004775 8.1e-50 201.1 170 72.9
BraA01t04550Z Brassica rapa HOM05D004151 ORTHO05D004775 1.1e-49 200.7 168 78.0
Nn7g35851 Nelumbo nucifera HOM05D004151 ORTHO05D004775 1.4e-49 200.3 148 81.1
SEGI_32651 Sequoiadendron giganteum HOM05D004151 ORTHO05D004775 1.4e-49 200.3 150 77.3
THA.LOC104802867 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 1.4e-49 200.3 149 82.6
HPP92_021240 Vanilla planifolia HOM05D004151 ORTHO05D004775 1.4e-49 200.3 147 82.3
CARHR194880 Cardamine hirsuta HOM05D004151 ORTHO05D004775 2.4e-49 199.5 163 76.1
FvH4_1g30320 Fragaria vesca HOM05D004151 ORTHO05D004775 2.4e-49 199.5 168 75.6
Gohir.D11G310400 Gossypium hirsutum HOM05D004151 ORTHO05D004775 2.4e-49 199.5 144 82.6
Gorai.007G343400 Gossypium raimondii HOM05D004151 ORTHO05D004775 2.4e-49 199.5 144 82.6
Oeu059999.1 Olea europaea HOM05D004151 ORTHO05D004775 2.4e-49 199.5 185 68.1
Ah.13g075350 Amaranthus hybridus HOM05D004151 ORTHO05D004775 5.3e-49 198.4 155 80.0
Gohir.A08G213200 Gossypium hirsutum HOM05D004151 ORTHO05D004775 5.3e-49 198.4 144 82.6
Gohir.D08G230300 Gossypium hirsutum HOM05D004151 ORTHO05D004775 5.3e-49 198.4 144 82.6
Gorai.004G244500 Gossypium raimondii HOM05D004151 ORTHO05D004775 5.3e-49 198.4 144 82.6
SalBow5G4201 Salvia bowleyana HOM05D004151 ORTHO05D004775 5.3e-49 198.4 141 79.4
Gohir.A11G296500 Gossypium hirsutum HOM05D004151 ORTHO05D004775 6.9e-49 198.0 144 81.9
FAN28G2413 Fragaria x ananassa HOM05D004151 ORTHO05D004775 1.2e-48 197.2 141 82.3
Os11g0579800 Oryza sativa ssp. japonica HOM05D004151 ORTHO05D004775 1.2e-48 197.2 150 77.3
A03p08690 Brassica napus HOM05D004151 ORTHO05D004775 1.5e-48 196.8 153 79.7
CARHR078040 Cardamine hirsuta HOM05D004151 ORTHO05D004775 1.5e-48 196.8 162 68.5
Thhalv10014755m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 1.5e-48 196.8 148 74.3
PSO063G0165 Papaver somniferum HOM05D004151 ORTHO05D004775 1.5e-48 196.8 167 77.2
Prupe.8G064800 Prunus persica HOM05D004151 ORTHO05D004775 2.0e-48 196.4 144 84.7
MD05G1045500 Malus domestica HOM05D004151 ORTHO05D004775 2.6e-48 196.1 145 77.9
TWI34G0161 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 2.6e-48 196.1 163 76.7
Potri.013G058400 Populus trichocarpa HOM05D004151 ORTHO05D004775 3.4e-48 195.7 160 73.1
PSO782G4796 Papaver somniferum HOM05D004151 ORTHO05D004775 4.4e-48 195.3 164 75.0
A02p04770 Brassica napus HOM05D004151 ORTHO05D004775 5.8e-48 194.9 168 75.6
Dinv37014 Davidia involucrata HOM05D004151 ORTHO05D004775 7.6e-48 194.5 183 66.7
BolC3t13499H Brassica oleracea HOM05D004151 ORTHO05D004775 1.3e-47 193.7 170 77.1
FAN19G1796 Fragaria x ananassa HOM05D004151 ORTHO05D004775 1.3e-47 193.7 168 75.0
FAN26G2823 Fragaria x ananassa HOM05D004151 ORTHO05D004775 1.3e-47 193.7 168 75.0
AT5G18180 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 2.2e-47 193.0 148 76.4
CANSAT78G0749 Cannabis sativa HOM05D004151 ORTHO05D004775 2.2e-47 193.0 177 75.7
Potri.019G034900 Populus trichocarpa HOM05D004151 ORTHO05D004775 2.2e-47 193.0 159 76.7
RcHm_v2.0_Chr3g0490211 Rosa chinensis HOM05D004151 ORTHO05D004775 2.2e-47 193.0 167 74.3
BcaNung05743 Brassica carinata HOM05D004151 ORTHO05D004775 2.9e-47 192.6 169 75.7
MD00G1189600 Malus domestica HOM05D004151 ORTHO05D004775 2.9e-47 192.6 143 74.8
PSO384G0229 Papaver somniferum HOM05D004151 ORTHO05D004775 2.9e-47 192.6 149 78.5
Dinv14579 Davidia involucrata HOM05D004151 ORTHO05D004775 3.8e-47 192.2 184 72.3
Duzib177G0709 Durio zibethinus HOM05D004151 ORTHO05D004775 3.8e-47 192.2 146 80.8
Zm00001eb200450 Zea mays HOM05D004151 ORTHO05D004775 3.8e-47 192.2 144 79.2
COL.COLO4_13597 Corchorus olitorius HOM05D004151 ORTHO05D004775 4.9e-47 191.8 145 80.0
FAN23G0170 Fragaria x ananassa HOM05D004151 ORTHO05D004775 6.4e-47 191.4 168 74.4
Sp3g02890 Schrenkiella parvula HOM05D004151 ORTHO05D004775 6.4e-47 191.4 150 75.3
BcaC03g13582 Brassica carinata HOM05D004151 ORTHO05D004775 8.4e-47 191.0 168 73.8
BolC2t06882H Brassica oleracea HOM05D004151 ORTHO05D004775 8.4e-47 191.0 168 73.8
BcaB01g05179 Brassica carinata HOM05D004151 ORTHO05D004775 1.1e-46 190.7 170 76.5
C03p10140 Brassica napus HOM05D004151 ORTHO05D004775 1.1e-46 190.7 170 76.5
BraA03t10192Z Brassica rapa HOM05D004151 ORTHO05D004775 1.1e-46 190.7 170 76.5
Sabra19G0042500 Salix brachista HOM05D004151 ORTHO05D004775 1.1e-46 190.7 145 82.1
Sabra19G0044800 Salix brachista HOM05D004151 ORTHO05D004775 1.1e-46 190.7 145 82.1
CSS0045523 Camellia sinensis var. sinensis HOM05D004151 ORTHO05D004775 1.4e-46 190.3 151 76.2
HanXRQChr08g0216931 Helianthus annuus HOM05D004151 ORTHO05D004775 1.4e-46 190.3 153 77.1
Hund24835 Selenicereus undatus HOM05D004151 ORTHO05D004775 1.4e-46 190.3 151 77.5
BcaNung05745 Brassica carinata HOM05D004151 ORTHO05D004775 2.4e-46 189.5 160 74.4
Aa31LG11G11430 Aethionema arabicum HOM05D004151 ORTHO05D004775 3.2e-46 189.1 146 77.4
BolC1t05799H Brassica oleracea HOM05D004151 ORTHO05D004775 3.2e-46 189.1 167 73.1
BraA02t05436Z Brassica rapa HOM05D004151 ORTHO05D004775 3.2e-46 189.1 169 72.2
Carub.0003s0316 Capsella rubella HOM05D004151 ORTHO05D004775 4.2e-46 188.7 154 77.3
Thhalv10021561m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 4.2e-46 188.7 151 74.8
Lsat_1_v5_gn_8_24760 Lactuca sativa HOM05D004151 ORTHO05D004775 4.2e-46 188.7 153 77.8
PSO339G5713 Papaver somniferum HOM05D004151 ORTHO05D004775 4.2e-46 188.7 145 79.3
AT3G03920 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 7.1e-46 188.0 172 72.1
Oeu049600.1 Olea europaea HOM05D004151 ORTHO05D004775 7.1e-46 188.0 167 79.6
unitig_21.g20195 Utricularia gibba HOM05D004151 ORTHO05D004775 7.1e-46 188.0 156 65.4
Lsat_1_v5_gn_8_145841 Lactuca sativa HOM05D004151 ORTHO05D004775 9.3e-46 187.6 153 77.1
Sc25g0004980 Simmondsia chinensis HOM05D004151 ORTHO05D004775 9.3e-46 187.6 149 71.1
ATR0697G007 Amborella trichopoda HOM05D004151 ORTHO05D004775 1.2e-45 187.2 144 81.9
C02p09730 Brassica napus HOM05D004151 ORTHO05D004775 1.6e-45 186.8 168 72.6
AL6G29380 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 2.1e-45 186.4 148 71.6
Actinidia22083 Actinidia chinensis HOM05D004151 ORTHO05D004775 2.7e-45 186.0 144 81.9
Carub.0006s1646 Capsella rubella HOM05D004151 ORTHO05D004775 2.7e-45 186.0 148 78.4
BcaB05g23300 Brassica carinata HOM05D004151 ORTHO05D004775 3.5e-45 185.7 147 79.6
EL10Ac3g06820 Beta vulgaris HOM05D004151 ORTHO05D004775 6.0e-45 184.9 149 75.2
AUR62032690 Chenopodium quinoa HOM05D004151 ORTHO05D004775 6.0e-45 184.9 148 75.7
HanXRQChr07g0204461 Helianthus annuus HOM05D004151 ORTHO05D004775 6.0e-45 184.9 147 74.1
AL3G13810 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 7.8e-45 184.5 175 75.4
Aa31LG5G14500 Aethionema arabicum HOM05D004151 ORTHO05D004775 1.3e-44 183.7 167 76.0
vmacro09141 Vaccinium macrocarpon HOM05D004151 ORTHO05D004775 1.7e-44 183.3 164 69.5
ECA233G5487 Erigeron canadensis HOM05D004151 ORTHO05D004775 6.6e-44 181.4 168 65.5
Pp3c5_28430 Physcomitrium patens HOM05D004151 ORTHO05D004775 4.3e-43 178.7 148 75.0
Ca_08267_v3 Cicer arietinum L. HOM05D004151 ORTHO05D004775 7.3e-43 177.9 87 94.3
Pp3c25_15020 Physcomitrium patens HOM05D004151 ORTHO05D004775 9.6e-43 177.6 148 75.0
Cpa.g.sc51.114 Carica papaya HOM05D004151 ORTHO05D004775 1.3e-42 177.2 91 89.0
Peaxi162Scf00076g01048 Petunia axillaris HOM05D004151 ORTHO05D004775 1.3e-42 177.2 149 73.2
Zm00001eb114360 Zea mays HOM05D004151 ORTHO05D004775 1.6e-42 176.8 181 64.6
Mapoly0086s0024 Marchantia polymorpha HOM05D004151 ORTHO05D004775 4.8e-42 175.3 141 75.2
Rhsim04G0087500 Rhododendron simsii HOM05D004151 ORTHO05D004775 4.8e-42 175.3 148 70.3
CBR_g48747 Chara braunii HOM05D004151 ORTHO05D004775 6.2e-42 174.9 154 68.8
AagrBONN_evm.TU.Sc2ySwM_362.2901 Anthoceros agrestis HOM05D004151 ORTHO05D004775 3.1e-41 172.6 149 69.1
COL.COLO4_13598 Corchorus olitorius HOM05D004151 ORTHO05D004775 6.9e-41 171.4 151 71.5
Cre13.g567850 Chlamydomonas reinhardtii HOM05D004151 ORTHO05D004775 2.0e-40 169.9 169 66.3
CAN.G960.49 Capsicum annuum HOM05D004151 ORTHO05D004775 4.5e-40 168.7 92 87.0
Nitab4.5_0004844g0050 Nicotiana tabacum HOM05D004151 ORTHO05D004775 2.2e-39 166.4 89 85.4
Nitab4.5_0002769g0090 Nicotiana tabacum HOM05D004151 ORTHO05D004775 2.4e-38 162.9 153 68.0
Hund19236 Selenicereus undatus HOM05D004151 ORTHO05D004775 1.6e-37 160.2 124 65.3
MBI11_g31283_MAGBIO Magnolia biondii HOM05D004151 ORTHO05D004775 5.1e-36 155.2 81 85.2
MCO13G219 Micromonas commoda HOM05D004151 ORTHO05D004775 1.2e-32 144.1 132 68.2
SMO347G0554 Selaginella moellendorffii HOM05D004151 ORTHO05D004775 1.5e-32 143.7 150 65.3
BolC2t11912H Brassica oleracea HOM05D004151 ORTHO05D004775 4.5e-32 142.1 128 59.4
C09p58800 Brassica napus HOM05D004151 ORTHO05D004775 1.8e-28 130.2 77 74.0
BraA10t42874Z Brassica rapa HOM05D004151 ORTHO05D004775 5.1e-28 128.6 101 65.3
PRCOL_00005119 Prasinoderma coloniale HOM05D005848 ORTHO05D007532 1.8e-25 120.2 76 69.7
Actinidia30553 Actinidia chinensis HOM05D004151 ORTHO05D004775 5.8e-24 115.2 59 91.5
C02p58510 Brassica napus HOM05D004151 ORTHO05D004775 1.1e-22 110.9 94 57.4
unitig_744.g24550 Utricularia gibba HOM05D004151 ORTHO05D004775 1.1e-22 110.9 93 64.5
HanXRQChr05g0143841 Helianthus annuus HOM05D004151 ORTHO05D004775 6.0e-21 105.1 142 52.8
Haze_27090 Corylus avellana HOM05D000590 ORTHO05D004775 3.9e-20 102.4 94 50.0
Oeu035726.1 Olea europaea HOM05D004151 ORTHO05D004775 1.4e-17 94.0 107 56.1
Oeu035720.1 Olea europaea HOM05D004151 ORTHO05D004775 6.9e-17 91.7 104 54.8
Zm00001eb274230 Zea mays HOM05D004151 ORTHO05D004775 1.2e-16 90.9 49 79.6
BcaB08g36698 Brassica carinata HOM05D004151 ORTHO05D004775 2.3e-12 76.6 43 86.0
Atru.chr10.1764 Acer truncatum HOM05D004151 ORTHO05D004775 3.3e-11 72.8 81 56.8
Atru.chr5.2304 Acer truncatum HOM05D004151 ORTHO05D004775 3.3e-11 72.8 81 56.8
Atru.chr6.7 Acer truncatum HOM05D004151 ORTHO05D004775 1.3e-10 70.9 81 55.6
Atru.chr13.534 Acer truncatum HOM05D004151 ORTHO05D004775 2.8e-10 69.7 81 55.6
Atru.chr2.3197 Acer truncatum HOM05D004151 ORTHO05D004775 2.8e-10 69.7 81 55.6
Atru.chr4.2011 Acer truncatum HOM05D004151 ORTHO05D004775 2.8e-10 69.7 81 55.6
BolC9t58722H Brassica oleracea HOM05D004151 ORTHO05D004775 1.4e-09 67.4 146 49.3
ECA246G0128 Erigeron canadensis HOM05D001659 ORTHO05D001659 3.8e-07 59.3 35 71.4


User provided reference genes

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