Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.16G010300 Glycine max HOM05D001849 ORTHO05D004689 5.8e-121 437.6 220 100.0
Glyma.07G042000 Glycine max HOM05D001849 ORTHO05D004689 1.5e-84 316.6 161 96.3
Phvul.010G127100 Phaseolus vulgaris HOM05D001849 ORTHO05D004689 1.4e-82 310.1 161 94.4
VMungo0331G1611 Vigna mungo HOM05D001849 ORTHO05D004689 1.2e-81 307.0 161 92.5
Lj3g0004011 Lotus japonicus HOM05D001849 ORTHO05D004689 6.7e-77 291.2 160 88.1
Lalb_Chr10g0101321 Lupinus albus HOM05D001849 ORTHO05D004689 1.8e-74 283.1 161 86.3
Psat4g166880 Pisum sativum HOM05D001849 ORTHO05D004689 7.9e-70 267.7 161 83.9
TPR.G29992 Trifolium pratense HOM05D001849 ORTHO05D004689 7.9e-70 267.7 161 83.2
Medtr8g022010 Medicago truncatula HOM05D001849 ORTHO05D004689 5.1e-69 265.0 161 82.0
QL05p003662 Quercus lobata HOM05D001849 ORTHO05D004689 4.3e-68 261.9 160 80.0
Cfa003503 Carpinus fangiana HOM05D001849 ORTHO05D004689 2.6e-65 252.7 160 76.9
Actinidia32206 Actinidia chinensis HOM05D001849 ORTHO05D004689 7.7e-65 251.1 159 78.6
Potri.001G165900 Populus trichocarpa HOM05D001849 ORTHO05D004689 2.9e-64 249.2 160 74.4
Dinv20408 Davidia involucrata HOM05D001849 ORTHO05D004689 6.5e-64 248.1 160 75.0
Sabra01G0127400 Salix brachista HOM05D001849 ORTHO05D004689 6.5e-64 248.1 160 74.4
TAR626G0833 Trochodendron aralioides HOM05D001849 ORTHO05D004689 6.5e-64 248.1 181 66.9
Ca_23412_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004689 1.1e-63 247.3 151 82.8
RcHm_v2.0_Chr2g0146431 Rosa chinensis HOM05D001849 ORTHO05D004689 1.4e-63 246.9 160 74.4
vmacro15054 Vaccinium macrocarpon HOM05D001849 ORTHO05D004689 1.4e-63 246.9 171 72.5
CiPaw.01G216000 Carya illinoinensis HOM05D001849 ORTHO05D004689 1.2e-62 243.8 160 76.2
Duzib192G0006 Durio zibethinus HOM05D001849 ORTHO05D004689 1.6e-62 243.4 211 63.5
THA.LOC104822664 Tarenaya hassleriana HOM05D001849 ORTHO05D004689 1.6e-62 243.4 160 73.8
TWI59G1440 Tripterygium wilfordii HOM05D001849 ORTHO05D004689 2.1e-62 243.0 171 68.4
Manes.11G016400 Manihot esculenta HOM05D001849 ORTHO05D004689 3.6e-62 242.3 160 73.8
Atru.chr2.1505 Acer truncatum HOM05D001849 ORTHO05D004689 4.6e-62 241.9 160 74.4
Thecc.06G124800 Theobroma cacao HOM05D001849 ORTHO05D004689 4.6e-62 241.9 213 62.4
Carub.0003s1373 Capsella rubella HOM05D001849 ORTHO05D004689 6.1e-62 241.5 160 74.4
AT3G14120 Arabidopsis thaliana HOM05D001849 ORTHO05D004689 7.9e-62 241.1 160 74.4
CSS0036951 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.0e-61 240.7 160 75.6
CANSAT56G0878 Cannabis sativa HOM05D001849 ORTHO05D004689 1.0e-61 240.7 171 71.3
Duzib235G0671 Durio zibethinus HOM05D001849 ORTHO05D004689 1.0e-61 240.7 160 74.4
MD09G1178100 Malus domestica HOM05D001849 ORTHO05D004689 1.8e-61 240.0 160 71.9
MD17G1148600 Malus domestica HOM05D001849 ORTHO05D004689 3.0e-61 239.2 160 71.2
arahy.Tifrunner.gnm1.ann1.1RN2YG Arachis hypogaea HOM05D001849 ORTHO05D004689 3.9e-61 238.8 129 86.8
arahy.Tifrunner.gnm1.ann1.RMM65D Arachis hypogaea HOM05D001849 ORTHO05D004689 5.1e-61 238.4 160 73.8
AL3G26350 Arabidopsis lyrata HOM05D001849 ORTHO05D004689 8.8e-61 237.7 160 73.8
Gohir.D09G079550 Gossypium hirsutum HOM05D001849 ORTHO05D004689 8.8e-61 237.7 211 61.1
A01p39550 Brassica napus HOM05D001849 ORTHO05D004689 1.1e-60 237.3 160 73.1
Thhalv10019957m.g Eutrema salsugineum HOM05D001849 ORTHO05D004689 1.1e-60 237.3 160 72.5
COL.COLO4_30797 Corchorus olitorius HOM05D001849 ORTHO05D004689 2.0e-60 236.5 214 61.2
Aqoxy7G04006 Aquilegia oxysepala HOM05D001849 ORTHO05D004689 2.6e-60 236.1 157 72.0
FAN02G0489 Fragaria x ananassa HOM05D001849 ORTHO05D004689 3.3e-60 235.7 211 60.7
A05p35330 Brassica napus HOM05D001849 ORTHO05D004689 4.4e-60 235.3 160 72.5
C05p53520 Brassica napus HOM05D001849 ORTHO05D004689 4.4e-60 235.3 160 72.5
BolC5t34029H Brassica oleracea HOM05D001849 ORTHO05D004689 4.4e-60 235.3 160 72.5
FvH4_6g35170 Fragaria vesca HOM05D001849 ORTHO05D004689 4.4e-60 235.3 211 60.2
Gohir.A09G079900 Gossypium hirsutum HOM05D001849 ORTHO05D004689 4.4e-60 235.3 211 60.7
Gorai.006G094800 Gossypium raimondii HOM05D001849 ORTHO05D004689 4.4e-60 235.3 211 60.7
BolC1t05000H Brassica oleracea HOM05D001849 ORTHO05D004689 5.7e-60 235.0 160 72.5
FAN05G2930 Fragaria x ananassa HOM05D001849 ORTHO05D004689 5.7e-60 235.0 211 60.7
MBI13_g01700_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 1.3e-59 233.8 160 71.2
CAN.G1243.9 Capsicum annuum HOM05D001849 ORTHO05D004689 1.7e-59 233.4 159 72.3
AUR62009922 Chenopodium quinoa HOM05D001849 ORTHO05D004689 1.7e-59 233.4 160 68.8
Sp3g12380 Schrenkiella parvula HOM05D001849 ORTHO05D004689 1.7e-59 233.4 160 71.2
Nitab4.5_0000189g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004689 2.2e-59 233.0 160 70.6
Solyc12g049410.3 Solanum lycopersicum HOM05D001849 ORTHO05D004689 2.2e-59 233.0 160 71.9
FAN09G4066 Fragaria x ananassa HOM05D001849 ORTHO05D004689 2.8e-59 232.6 160 71.9
Nitab4.5_0004322g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004689 2.8e-59 232.6 160 71.2
Sopen12g023890 Solanum pennellii HOM05D001849 ORTHO05D004689 2.8e-59 232.6 160 71.2
Oeu008524.4 Olea europaea HOM05D001849 ORTHO05D004689 4.8e-59 231.9 189 63.0
PSO386G0179 Papaver somniferum HOM05D001849 ORTHO05D004689 6.3e-59 231.5 168 66.7
PSO724G1390 Papaver somniferum HOM05D001849 ORTHO05D004689 6.3e-59 231.5 160 68.8
GSVIVG01016717001 Vitis vinifera HOM05D001849 ORTHO05D004689 6.3e-59 231.5 179 65.9
BcaC05g29121 Brassica carinata HOM05D001849 ORTHO05D004689 1.8e-58 229.9 160 71.2
C01p50480 Brassica napus HOM05D001849 ORTHO05D004689 1.8e-58 229.9 213 59.6
CSS0020628 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.8e-58 229.9 219 57.5
Prupe.3G037400 Prunus persica HOM05D001849 ORTHO05D004689 1.8e-58 229.9 160 71.2
Aa31LG8G1350 Aethionema arabicum HOM05D001849 ORTHO05D004689 2.4e-58 229.6 160 71.9
PGR119G1999 Punica granatum HOM05D001849 ORTHO05D004689 5.3e-58 228.4 159 69.2
Ciclev10027090m.g Citrus clementina HOM05D001849 ORTHO05D004689 6.9e-58 228.0 221 57.5
Cc04_g01040 Coffea canephora HOM05D001849 ORTHO05D004689 2.0e-57 226.5 160 68.8
Hund18672 Selenicereus undatus HOM05D001849 ORTHO05D004689 4.5e-57 225.3 159 70.4
BraA01t03995Z Brassica rapa HOM05D001849 ORTHO05D004689 1.0e-56 224.2 171 66.7
SGA_v2.0_scaffold4G02078 Striga asiatica HOM05D001849 ORTHO05D004689 1.7e-56 223.4 210 57.1
ATR0681G401 Amborella trichopoda HOM05D001849 ORTHO05D004689 8.5e-56 221.1 160 66.9
BraA05t22343Z Brassica rapa HOM05D001849 ORTHO05D004689 1.1e-55 220.7 185 62.7
DCAR_026423 Daucus carota HOM05D001849 ORTHO05D004689 1.1e-55 220.7 214 55.6
Eucgr.K02038 Eucalyptus grandis HOM05D001849 ORTHO05D004689 1.1e-55 220.7 156 71.8
SalBow7G1889 Salvia bowleyana HOM05D001849 ORTHO05D004689 5.5e-55 218.4 157 68.2
ECA232G2821 Erigeron canadensis HOM05D001849 ORTHO05D004689 1.6e-54 216.9 160 68.1
CsaV3_7G034250 Cucumis sativus L. HOM05D001849 ORTHO05D004689 7.9e-54 214.5 159 66.0
Rhsim08G0241300 Rhododendron simsii HOM05D001849 ORTHO05D004689 7.9e-54 214.5 145 73.1
ClCG09G001140 Citrullus lanatus HOM05D001849 ORTHO05D004689 1.0e-53 214.2 159 66.0
CDE07G1134 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 1.4e-53 213.8 157 69.4
CARHR088980 Cardamine hirsuta HOM05D001849 ORTHO05D004689 2.3e-53 213.0 141 74.5
EL10Ac7g16444 Beta vulgaris HOM05D001849 ORTHO05D004689 3.0e-53 212.6 181 59.7
Lj9C535G6 Lonicera japonica HOM05D001849 ORTHO05D004689 3.0e-53 212.6 140 75.0
Sed0016273 Sechium edule HOM05D001849 ORTHO05D004689 1.1e-52 210.7 158 67.1
Haze_16076 Corylus avellana HOM05D001849 ORTHO05D004689 3.3e-52 209.1 194 59.3
unitig_578.g16691 Utricularia gibba HOM05D001849 ORTHO05D004689 3.3e-52 209.1 160 63.8
Peaxi162Scf00177g00518 Petunia axillaris HOM05D001849 ORTHO05D004689 3.7e-51 205.7 160 66.2
HanXRQChr09g0277131 Helianthus annuus HOM05D001849 ORTHO05D004689 4.8e-51 205.3 207 55.1
FAN14G1459 Fragaria x ananassa HOM05D001849 ORTHO05D004689 6.3e-51 204.9 192 57.8
HPP92_022009 Vanilla planifolia HOM05D001849 ORTHO05D004689 1.4e-50 203.8 169 63.9
AUR62001443 Chenopodium quinoa HOM05D001849 ORTHO05D004689 2.4e-50 203.0 140 67.1
Lsat_1_v5_gn_4_91381 Lactuca sativa HOM05D001849 ORTHO05D004689 5.3e-50 201.8 161 62.7
Os11g0643700 Oryza sativa ssp. japonica HOM05D001849 ORTHO05D004689 1.2e-49 200.7 159 63.5
Cpa.g.sc169.27 Carica papaya HOM05D001849 ORTHO05D004689 5.9e-49 198.4 141 70.9
Zm00001eb165950 Zea mays HOM05D001849 ORTHO05D004689 1.7e-48 196.8 164 60.4
CDE06G0404 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 1.8e-45 186.8 143 66.4
HPP92_021920 Vanilla planifolia HOM05D001849 ORTHO05D004689 2.6e-44 183.0 166 57.8
MELO3C024334.2 Cucumis melo HOM05D001849 ORTHO05D004689 1.3e-43 180.6 197 51.8
QL11p014752 Quercus lobata HOM05D001849 ORTHO05D004689 7.0e-42 174.9 102 79.4
SEGI_09459 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 3.6e-38 162.5 146 55.5
Mapoly0024s0112 Marchantia polymorpha HOM05D001849 ORTHO05D004689 2.8e-35 152.9 159 48.4
Pp3c8_15880 Physcomitrium patens HOM05D001849 ORTHO05D004689 2.4e-34 149.8 163 50.3
AagrBONN_evm.TU.Sc2ySwM_362.2383 Anthoceros agrestis HOM05D001849 ORTHO05D004689 1.5e-28 130.6 160 43.8
SMO304G0023 Selaginella moellendorffii HOM05D001849 ORTHO05D004689 1.5e-28 130.6 171 43.3
CBR_g39720 Chara braunii HOM05D001849 ORTHO05D004689 3.4e-20 102.8 157 39.5
CSS0003623 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 8.9e-13 78.2 49 73.5
CSS0050059 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 2.0e-12 77.0 97 47.4
BcaNung06672 Brassica carinata HOM05D001849 ORTHO05D004689 3.4e-12 76.3 94 51.1
BolC2t10453H Brassica oleracea HOM05D001849 ORTHO05D004689 4.1e-10 69.3 53 66.0
C02p44100 Brassica napus HOM05D001849 ORTHO05D004689 4.6e-09 65.9 53 64.2
CSS0002239 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 1.2e-06 57.8 41 68.3
CSS0017686 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 6.2e-06 55.5 50 54.0


User provided reference genes

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