Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G176200 Glycine max HOM05D006184 ORTHO05D007862 0.0e+00 1337.4 649 100.0
Glyma.18G065700 Glycine max HOM05D006184 ORTHO05D007862 0.0e+00 1287.3 647 96.1
Phvul.006G065300 Phaseolus vulgaris HOM05D006184 ORTHO05D007862 0.0e+00 1240.3 651 91.9
VMungo0540G2418 Vigna mungo HOM05D006184 ORTHO05D007862 0.0e+00 1235.7 646 91.6
Lj6g0009842 Lotus japonicus HOM05D006184 ORTHO05D007862 0.0e+00 1216.8 646 90.2
Medtr3g462950 Medicago truncatula HOM05D006184 ORTHO05D007862 0.0e+00 1214.1 647 89.8
Ca_14911_v3 Cicer arietinum L. HOM05D006184 ORTHO05D007862 0.0e+00 1213.0 646 89.9
arahy.Tifrunner.gnm1.ann1.N1U5TX Arachis hypogaea HOM05D006184 ORTHO05D007862 0.0e+00 1208.4 649 89.4
arahy.Tifrunner.gnm1.ann1.F7MUQP Arachis hypogaea HOM05D006184 ORTHO05D007862 0.0e+00 1206.0 649 89.1
Psat5g162200 Pisum sativum HOM05D006184 ORTHO05D007862 0.0e+00 1203.0 646 89.3
Medtr3g462970 Medicago truncatula HOM05D006184 ORTHO05D007862 0.0e+00 1199.5 646 89.0
Lalb_Chr17g0345001 Lupinus albus HOM05D006184 ORTHO05D007862 0.0e+00 1199.1 648 88.6
Gohir.A03G049500 Gossypium hirsutum HOM05D006184 ORTHO05D007862 0.0e+00 1190.3 645 88.5
Gohir.D03G117800 Gossypium hirsutum HOM05D006184 ORTHO05D007862 0.0e+00 1190.3 645 88.4
Gorai.003G124300 Gossypium raimondii HOM05D006184 ORTHO05D007862 0.0e+00 1190.3 645 88.4
QL01p026813 Quercus lobata HOM05D006184 ORTHO05D007862 0.0e+00 1186.8 645 88.2
Duzib168G0250 Durio zibethinus HOM05D006184 ORTHO05D007862 0.0e+00 1183.7 643 87.6
CiPaw.13G080700 Carya illinoinensis HOM05D006184 ORTHO05D007862 0.0e+00 1181.8 639 88.6
FvH4_3g38200 Fragaria vesca HOM05D006184 ORTHO05D007862 0.0e+00 1181.0 648 88.1
RcHm_v2.0_Chr5g0068641 Rosa chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1180.6 648 88.1
Cfa011654 Carpinus fangiana HOM05D006184 ORTHO05D007862 0.0e+00 1180.2 641 88.0
COL.COLO4_19110 Corchorus olitorius HOM05D006184 ORTHO05D007862 0.0e+00 1179.9 643 87.7
Prupe.6G060700 Prunus persica HOM05D006184 ORTHO05D007862 0.0e+00 1178.7 645 87.3
FAN21G1896 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1178.3 648 88.0
Eucgr.B02273 Eucalyptus grandis HOM05D006184 ORTHO05D007862 0.0e+00 1177.2 645 87.9
FAN25G1982 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1177.2 648 88.1
Thecc.09G305300 Theobroma cacao HOM05D006184 ORTHO05D007862 0.0e+00 1176.8 643 87.2
FAN11G1847 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1176.4 648 88.0
FAN16G1207 Fragaria x ananassa HOM05D006184 ORTHO05D007862 0.0e+00 1176.4 645 88.4
CsaV3_1G036050 Cucumis sativus L. HOM05D006184 ORTHO05D007862 0.0e+00 1173.7 649 86.6
Atru.chr3.4272 Acer truncatum HOM05D006184 ORTHO05D007862 0.0e+00 1172.5 647 87.0
MELO3C020563.2 Cucumis melo HOM05D006184 ORTHO05D007862 0.0e+00 1172.5 647 86.6
Lj1A141T56 Lonicera japonica HOM05D006184 ORTHO05D007862 0.0e+00 1171.0 647 85.8
PGR102G1950 Punica granatum HOM05D006184 ORTHO05D007862 0.0e+00 1169.5 646 86.4
MD03G1074000 Malus domestica HOM05D006184 ORTHO05D007862 0.0e+00 1169.1 644 87.1
MD11G1080300 Malus domestica HOM05D006184 ORTHO05D007862 0.0e+00 1167.9 644 86.8
ClCG03G000880 Citrullus lanatus HOM05D006184 ORTHO05D007862 0.0e+00 1166.4 647 85.9
Manes.02G121696 Manihot esculenta HOM05D006184 ORTHO05D007862 0.0e+00 1165.6 646 87.3
EL10Ac7g16128 Beta vulgaris HOM05D006184 ORTHO05D007862 0.0e+00 1163.7 645 85.7
Ciclev10027988m.g Citrus clementina HOM05D006184 ORTHO05D007862 0.0e+00 1162.9 649 86.0
ECA248G3465 Erigeron canadensis HOM05D006184 ORTHO05D007862 0.0e+00 1159.8 647 84.9
Manes.01G164200 Manihot esculenta HOM05D006184 ORTHO05D007862 0.0e+00 1159.4 650 86.3
Rhsim13G0072000 Rhododendron simsii HOM05D006184 ORTHO05D007862 0.0e+00 1158.7 647 84.7
Sed0012033 Sechium edule HOM05D006184 ORTHO05D007862 0.0e+00 1157.1 643 86.2
MBI05_g03463_MAGBIO Magnolia biondii HOM05D006184 ORTHO05D007862 0.0e+00 1155.6 645 85.6
Hund04886 Selenicereus undatus HOM05D006184 ORTHO05D007862 0.0e+00 1154.8 648 84.9
Ah.15g099710 Amaranthus hybridus HOM05D006184 ORTHO05D007862 0.0e+00 1154.0 645 85.1
Hma1.2p1_0227F.1_g096310 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 0.0e+00 1153.3 645 85.3
Oeu009379.1 Olea europaea HOM05D006184 ORTHO05D007862 0.0e+00 1151.0 647 84.2
Sc12g0000880 Simmondsia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1151.0 645 84.3
TAR633G0598 Trochodendron aralioides HOM05D006184 ORTHO05D007862 0.0e+00 1149.0 643 84.8
Ah.08g220740 Amaranthus hybridus HOM05D006184 ORTHO05D007862 0.0e+00 1148.3 645 84.3
DCAR_007390 Daucus carota HOM05D006184 ORTHO05D007862 0.0e+00 1148.3 648 84.4
Nn2g13623 Nelumbo nucifera HOM05D006184 ORTHO05D007862 0.0e+00 1148.3 643 85.2
Lsat_1_v5_gn_5_158421 Lactuca sativa HOM05D006184 ORTHO05D007862 0.0e+00 1147.1 643 84.8
HanXRQChr10g0298731 Helianthus annuus HOM05D006184 ORTHO05D007862 0.0e+00 1146.3 644 85.2
CSS0002743 Camellia sinensis var. sinensis HOM05D006184 ORTHO05D007862 0.0e+00 1145.2 648 84.6
Cc01_g13950 Coffea canephora HOM05D006184 ORTHO05D007862 0.0e+00 1144.0 645 84.5
AUR62001683 Chenopodium quinoa HOM05D006184 ORTHO05D007862 0.0e+00 1143.3 643 84.9
Sp4g12340 Schrenkiella parvula HOM05D006184 ORTHO05D007862 0.0e+00 1142.1 644 85.9
AT2G29630 Arabidopsis thaliana HOM05D006184 ORTHO05D007862 0.0e+00 1141.7 644 85.7
HanXRQChr13g0388411 Helianthus annuus HOM05D006184 ORTHO05D007862 0.0e+00 1141.7 647 84.2
CARHR122950 Cardamine hirsuta HOM05D006184 ORTHO05D007862 0.0e+00 1140.6 647 85.6
Carub.0004s1072 Capsella rubella HOM05D006184 ORTHO05D007862 0.0e+00 1139.8 648 85.0
Cpa.g.sc112.53 Carica papaya HOM05D006184 ORTHO05D007862 0.0e+00 1139.8 647 84.7
Thhalv10016370m.g Eutrema salsugineum HOM05D006184 ORTHO05D007862 0.0e+00 1137.5 645 85.6
Nitab4.5_0001970g0070 Nicotiana tabacum HOM05D006184 ORTHO05D007862 0.0e+00 1136.7 648 84.0
AL4G24380 Arabidopsis lyrata HOM05D006184 ORTHO05D007862 0.0e+00 1135.9 645 85.3
AUR62020099 Chenopodium quinoa HOM05D006184 ORTHO05D007862 0.0e+00 1135.6 644 84.6
GSVIVG01024789001 Vitis vinifera HOM05D006184 ORTHO05D007862 0.0e+00 1133.6 639 85.0
BcaC02g11044 Brassica carinata HOM05D006184 ORTHO05D007862 0.0e+00 1133.2 651 84.8
C04p21210 Brassica napus HOM05D006184 ORTHO05D007862 0.0e+00 1133.2 651 84.8
Nitab4.5_0000102g0140 Nicotiana tabacum HOM05D006184 ORTHO05D007862 0.0e+00 1132.9 648 83.6
A05p15770 Brassica napus HOM05D006184 ORTHO05D007862 0.0e+00 1131.7 651 84.8
BcaB02g10267 Brassica carinata HOM05D006184 ORTHO05D007862 0.0e+00 1131.3 646 85.0
Aqoxy4G02661 Aquilegia oxysepala HOM05D006184 ORTHO05D007862 0.0e+00 1130.9 643 84.0
BraA05t20491Z Brassica rapa HOM05D006184 ORTHO05D007862 0.0e+00 1130.5 651 84.6
BolC4t23646H Brassica oleracea HOM05D006184 ORTHO05D007862 0.0e+00 1129.0 651 84.5
SalBow2G2183 Salvia bowleyana HOM05D006184 ORTHO05D007862 0.0e+00 1128.6 646 83.6
Aa31LG5G7380 Aethionema arabicum HOM05D006184 ORTHO05D007862 0.0e+00 1126.3 646 83.0
Solyc06g006080.3 Solanum lycopersicum HOM05D006184 ORTHO05D007862 0.0e+00 1125.9 648 83.0
Sopen06g002030 Solanum pennellii HOM05D006184 ORTHO05D007862 0.0e+00 1125.9 648 83.0
Potri.009G043200 Populus trichocarpa HOM05D006184 ORTHO05D007862 0.0e+00 1123.6 646 85.1
CDE03G0407 Ceratophyllum demersum HOM05D006184 ORTHO05D007862 0.0e+00 1123.2 643 83.2
Sc06g0008420 Simmondsia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1123.2 645 82.3
Potri.001G249200 Populus trichocarpa HOM05D006184 ORTHO05D007862 0.0e+00 1122.8 638 85.1
PGSC0003DMG400004151 Solanum tuberosum HOM05D006184 ORTHO05D007862 0.0e+00 1120.5 648 82.7
Actinidia38827 Actinidia chinensis HOM05D006184 ORTHO05D007862 0.0e+00 1119.8 648 83.2
MSTRG.24765 Avicennia marina HOM05D006184 ORTHO05D007862 0.0e+00 1119.0 647 82.2
Peaxi162Scf00216g00033 Petunia axillaris HOM05D006184 ORTHO05D007862 0.0e+00 1117.8 649 83.1
Peaxi162Scf00451g00511 Petunia axillaris HOM05D006184 ORTHO05D007862 0.0e+00 1116.7 649 82.7
Sabra09G0030600 Salix brachista HOM05D006184 ORTHO05D007862 0.0e+00 1116.3 595 89.4
ATR0564G389 Amborella trichopoda HOM05D006184 ORTHO05D007862 0.0e+00 1115.5 643 83.0
Migut.G00281 Erythranthe guttata HOM05D006184 ORTHO05D007862 0.0e+00 1111.7 649 82.6
TWI79G1750 Tripterygium wilfordii HOM05D006184 ORTHO05D007862 0.0e+00 1109.7 645 82.3
Oeu049272.2 Olea europaea HOM05D006184 ORTHO05D007862 0.0e+00 1099.0 715 75.0
Haze_24258 Corylus avellana HOM05D006184 ORTHO05D007862 0.0e+00 1096.6 641 83.9
TPR.G13280 Trifolium pratense HOM05D006184 ORTHO05D007862 0.0e+00 1094.0 646 83.1
Os03g0679700 Oryza sativa ssp. japonica HOM05D006184 ORTHO05D007862 0.0e+00 1091.6 634 81.5
CDE04G0688 Ceratophyllum demersum HOM05D006184 ORTHO05D007862 0.0e+00 1089.7 585 87.7
Dinv28618 Davidia involucrata HOM05D006184 ORTHO05D007862 0.0e+00 1089.7 594 87.5
Zm00001eb051950 Zea mays HOM05D006184 ORTHO05D007862 0.0e+00 1088.2 627 82.0
SGA_v2.0_scaffold142G35644 Striga asiatica HOM05D006184 ORTHO05D007862 4.4e-312 1074.3 650 78.5
CAN.G780.2 Capsicum annuum HOM05D006184 ORTHO05D007862 1.8e-308 1062.0 645 80.0
Pp3c16_8630 Physcomitrium patens HOM05D006184 ORTHO05D007862 5.0e-298 1027.3 646 77.2
SHI12345 Sapria himalayana HOM05D006184 ORTHO05D007862 1.0e-295 1019.6 668 74.4
Pp3c25_5720 Physcomitrium patens HOM05D006184 ORTHO05D007862 1.2e-294 1016.1 597 80.4
HPP92_012628 Vanilla planifolia HOM05D006184 ORTHO05D007862 1.5e-294 1015.8 541 87.8
AagrBONN_evm.TU.Sc2ySwM_117.2039 Anthoceros agrestis HOM05D006184 ORTHO05D007862 2.6e-294 1015.0 638 77.9
Mapoly0078s0008 Marchantia polymorpha HOM05D006184 ORTHO05D007862 1.2e-291 1006.1 585 81.5
Cfa015458 Carpinus fangiana HOM05D006184 ORTHO05D007862 1.2e-286 989.6 613 79.4
SMO272G0033 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 4.4e-286 987.6 606 76.6
SMO165G0141 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 4.6e-283 977.6 554 81.8
CBR_g30996 Chara braunii HOM05D006184 ORTHO05D007862 3.3e-257 891.7 476 87.2
Cre05.g240850 Chlamydomonas reinhardtii HOM05D006184 ORTHO05D007862 8.5e-229 797.3 510 74.5
Sabra16G0151300 Salix brachista HOM05D006184 ORTHO05D007862 5.4e-199 698.4 416 81.7
vmacro02987 Vaccinium macrocarpon HOM05D006184 ORTHO05D007862 1.1e-191 674.1 394 80.7
Haze_26876 Corylus avellana HOM05D006184 ORTHO05D007862 9.1e-191 671.0 631 56.7
RcHm_v2.0_Chr5g0068681 Rosa chinensis HOM05D006184 ORTHO05D007862 1.3e-147 527.7 267 93.3
SMO165G0069 Selaginella moellendorffii HOM05D006184 ORTHO05D007862 3.3e-124 449.9 594 44.6
SEGI_15306 Sequoiadendron giganteum HOM05D006184 ORTHO05D007862 2.1e-70 271.2 227 60.4
Nn2g11393 Nelumbo nucifera HOM05D006184 ORTHO05D007862 1.5e-68 265.0 125 95.2
Nn2g11392 Nelumbo nucifera HOM05D006184 ORTHO05D007862 5.8e-44 183.3 151 60.3
Nn2g11394 Nelumbo nucifera HOM05D006184 ORTHO05D049308 3.5e-41 174.1 101 81.2
RcHm_v2.0_Chr5g0068691 Rosa chinensis HOM05D006184 ORTHO05D049308 6.2e-38 163.3 93 84.9
Actinidia16074 Actinidia chinensis HOM05D006184 ORTHO05D007862 8.4e-35 152.9 154 59.1
Hma1.2p1_2020F.1_g311280 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 1.7e-19 102.1 51 92.2
Hma1.2p1_0315F.1_g122560 Hydrangea macrophylla HOM05D006184 ORTHO05D007862 1.9e-18 98.6 51 90.2
Ah.02g117460 Amaranthus hybridus HOM05D000595 ORTHO05D004141 1.1e-07 62.8 32 87.5


User provided reference genes

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