Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.11G039000 Glycine max HOM05D005140 ORTHO05D006288 6.1e-275 950.3 508 100.0
Glyma.01G204000 Glycine max HOM05D005140 ORTHO05D006288 1.6e-262 909.1 508 96.3
Phvul.002G002400 Phaseolus vulgaris HOM05D005140 ORTHO05D006288 3.7e-256 887.9 512 93.6
Ca_24617_v3 Cicer arietinum L. HOM05D005140 ORTHO05D006288 6.8e-242 840.5 516 86.8
Psat2g175480 Pisum sativum HOM05D005140 ORTHO05D006288 1.9e-239 832.4 517 88.6
Lalb_Chr09g0324091 Lupinus albus HOM05D005140 ORTHO05D006288 5.2e-234 814.3 514 86.8
Lj2g0026795 Lotus japonicus HOM05D005140 ORTHO05D006288 4.9e-232 807.7 513 86.7
arahy.Tifrunner.gnm1.ann1.FH98R9 Arachis hypogaea HOM05D005140 ORTHO05D006288 2.5e-228 795.4 527 84.3
arahy.Tifrunner.gnm1.ann1.W7TPG2 Arachis hypogaea HOM05D005140 ORTHO05D006288 2.5e-228 795.4 527 84.3
Rhsim07G0119600 Rhododendron simsii HOM05D005140 ORTHO05D006288 1.7e-224 782.7 419 86.6
Gorai.004G191200 Gossypium raimondii HOM05D005140 ORTHO05D006288 4.2e-223 778.1 421 85.5
CiPaw.12G056200 Carya illinoinensis HOM05D005140 ORTHO05D006288 4.6e-222 774.6 425 86.1
Prupe.5G053400 Prunus persica HOM05D005140 ORTHO05D006288 1.3e-221 773.1 422 86.3
Atru.chr9.1157 Acer truncatum HOM05D005140 ORTHO05D006288 1.7e-221 772.7 420 85.2
ClCG09G012630 Citrullus lanatus HOM05D005140 ORTHO05D006288 1.7e-221 772.7 425 84.9
Thecc.03G238100 Theobroma cacao HOM05D005140 ORTHO05D006288 3.0e-221 771.9 419 85.4
Gohir.D08G182300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 1.1e-220 770.0 421 84.8
Dinv25152 Davidia involucrata HOM05D005140 ORTHO05D006288 3.3e-220 768.5 435 82.5
Sed0013740 Sechium edule HOM05D005140 ORTHO05D006288 7.3e-220 767.3 424 84.7
CsaV3_3G049760 Cucumis sativus L. HOM05D005140 ORTHO05D006288 1.3e-219 766.5 426 84.5
Nn6g33739 Nelumbo nucifera HOM05D005140 ORTHO05D006288 1.6e-219 766.1 420 85.0
MELO3C003340.2 Cucumis melo HOM05D005140 ORTHO05D006288 2.1e-219 765.8 426 84.5
Actinidia31490 Actinidia chinensis HOM05D005140 ORTHO05D006288 2.4e-218 762.3 464 79.3
COL.COLO4_06693 Corchorus olitorius HOM05D005140 ORTHO05D006288 2.4e-218 762.3 436 83.0
Medtr5g013580 Medicago truncatula HOM05D005140 ORTHO05D006288 2.4e-218 762.3 514 83.7
PGR031G2829 Punica granatum HOM05D005140 ORTHO05D006288 3.1e-218 761.9 425 84.2
vmacro23518 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 1.5e-217 759.6 433 83.4
Sed0020438 Sechium edule HOM05D005140 ORTHO05D006288 2.0e-217 759.2 423 84.2
Manes.01G182900 Manihot esculenta HOM05D005140 ORTHO05D006288 4.5e-217 758.1 418 84.7
TAR636G3078 Trochodendron aralioides HOM05D005140 ORTHO05D006288 7.6e-217 757.3 423 83.5
MSTRG.13768 Avicennia marina HOM05D005140 ORTHO05D006288 1.3e-216 756.5 419 83.8
Eucgr.D02138 Eucalyptus grandis HOM05D005140 ORTHO05D006288 8.4e-216 753.8 452 79.6
Cc08_g11170 Coffea canephora HOM05D005140 ORTHO05D006288 1.4e-215 753.1 420 83.8
Migut.F01520 Erythranthe guttata HOM05D005140 ORTHO05D006288 9.3e-215 750.4 416 83.4
QL12p008469 Quercus lobata HOM05D005140 ORTHO05D006288 1.6e-214 749.6 436 81.0
Haze_08349 Corylus avellana HOM05D005140 ORTHO05D006288 2.1e-214 749.2 429 83.2
Solyc08g077750.4 Solanum lycopersicum HOM05D005140 ORTHO05D006288 2.7e-214 748.8 447 78.3
RcHm_v2.0_Chr7g0206411 Rosa chinensis HOM05D005140 ORTHO05D006288 3.5e-214 748.4 433 82.2
Sopen08g026270 Solanum pennellii HOM05D005140 ORTHO05D006288 6.0e-214 747.7 450 77.6
TPR.G22969 Trifolium pratense HOM05D005140 ORTHO05D006288 7.9e-214 747.3 426 84.7
Dinv28888 Davidia involucrata HOM05D005140 ORTHO05D006288 1.8e-213 746.1 404 85.4
Peaxi162Scf00301g01111 Petunia axillaris HOM05D005140 ORTHO05D006288 1.8e-213 746.1 423 81.8
Potri.001G149900 Populus trichocarpa HOM05D005140 ORTHO05D006288 2.3e-213 745.7 418 83.3
DCAR_008319 Daucus carota HOM05D005140 ORTHO05D006288 3.9e-213 745.0 421 82.9
SGA_v2.0_scaffold20G09272 Striga asiatica HOM05D005140 ORTHO05D006288 5.1e-213 744.6 434 81.3
FAN08G1378 Fragaria x ananassa HOM05D005140 ORTHO05D006288 1.5e-212 743.0 426 84.0
FAN13G1317 Fragaria x ananassa HOM05D005140 ORTHO05D006288 1.5e-212 743.0 434 82.7
FvH4_5g20680 Fragaria vesca HOM05D005140 ORTHO05D006288 2.5e-212 742.3 434 82.3
CAN.G572.25 Capsicum annuum HOM05D005140 ORTHO05D006288 3.3e-212 741.9 417 82.0
TWI60G0080 Tripterygium wilfordii HOM05D005140 ORTHO05D006288 1.3e-211 740.0 420 83.1
FAN04G2093 Fragaria x ananassa HOM05D005140 ORTHO05D006288 2.8e-211 738.8 434 82.0
Gohir.A08G162300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 4.0e-210 734.9 421 82.7
CANSAT21G2106 Cannabis sativa HOM05D005140 ORTHO05D006288 5.3e-210 734.6 438 80.4
Duzib068G0986 Durio zibethinus HOM05D005140 ORTHO05D006288 2.6e-209 732.3 426 81.0
Hund14471 Selenicereus undatus HOM05D005140 ORTHO05D006288 9.9e-209 730.3 419 82.6
Lsat_1_v5_gn_6_94760 Lactuca sativa HOM05D005140 ORTHO05D006288 8.4e-208 727.2 426 81.9
Ah.12g053860 Amaranthus hybridus HOM05D005140 ORTHO05D006288 6.0e-206 721.1 416 82.7
unitig_699.g19774 Utricularia gibba HOM05D005140 ORTHO05D006288 6.7e-205 717.6 422 80.6
Sabra01G0119900 Salix brachista HOM05D005140 ORTHO05D006288 2.5e-204 715.7 476 73.1
vmacro14121 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 5.6e-204 714.5 433 79.7
MD00G1132300 Malus domestica HOM05D005140 ORTHO05D006288 8.4e-200 700.7 425 80.0
EL10Ac5g12239 Beta vulgaris HOM05D005140 ORTHO05D006288 5.5e-199 698.0 459 73.6
ECA240G1687 Erigeron canadensis HOM05D005140 ORTHO05D006288 3.5e-198 695.3 422 78.4
MD06G1045500 Malus domestica HOM05D005140 ORTHO05D006288 6.0e-198 694.5 431 78.2
Nn1g00730 Nelumbo nucifera HOM05D005140 ORTHO05D006288 4.3e-196 688.3 416 79.1
Nitab4.5_0012059g0010 Nicotiana tabacum HOM05D005140 ORTHO05D006288 5.7e-196 688.0 448 73.9
THA.LOC104798349 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 2.2e-195 686.0 429 76.7
Aqoxy3G02576 Aquilegia oxysepala HOM05D005140 ORTHO05D006288 2.4e-194 682.6 422 77.3
Ciclev10019303m.g Citrus clementina HOM05D005140 ORTHO05D006288 4.1e-194 681.8 387 82.4
Nitab4.5_0004689g0020 Nicotiana tabacum HOM05D005140 ORTHO05D006288 6.9e-194 681.0 433 74.8
PSO063G3549 Papaver somniferum HOM05D005140 ORTHO05D006288 1.3e-192 676.8 440 75.0
Carub.0007s2375 Capsella rubella HOM05D005140 ORTHO05D006288 2.2e-192 676.0 421 76.0
PSO782G2508 Papaver somniferum HOM05D005140 ORTHO05D006288 2.2e-192 676.0 440 75.0
AT4G17620 Arabidopsis thaliana HOM05D005140 ORTHO05D006288 5.5e-191 671.4 420 76.0
Sp7g16510 Schrenkiella parvula HOM05D005140 ORTHO05D006288 3.9e-189 665.2 430 73.3
BcaNung00074 Brassica carinata HOM05D005140 ORTHO05D006288 8.8e-189 664.1 424 74.5
CARHR224350 Cardamine hirsuta HOM05D005140 ORTHO05D006288 1.1e-188 663.7 421 75.1
BcaNung03452 Brassica carinata HOM05D005140 ORTHO05D006288 7.4e-188 661.0 417 75.3
A03p50570 Brassica napus HOM05D005140 ORTHO05D006288 6.3e-187 657.9 430 73.5
GSVIVG01013286001 Vitis vinifera HOM05D005140 ORTHO05D006288 8.2e-187 657.5 350 88.3
BcaC06g33554 Brassica carinata HOM05D005140 ORTHO05D006288 5.3e-186 654.8 421 74.1
C01p11300 Brassica napus HOM05D005140 ORTHO05D006288 2.6e-185 652.5 420 73.8
BraA03t14147Z Brassica rapa HOM05D005140 ORTHO05D006288 5.0e-184 648.3 430 72.6
Thhalv10024864m.g Eutrema salsugineum HOM05D005140 ORTHO05D006288 8.5e-184 647.5 419 74.2
BolC7t45397H Brassica oleracea HOM05D005140 ORTHO05D006288 7.2e-183 644.4 434 71.9
C07p48890 Brassica napus HOM05D005140 ORTHO05D006288 4.7e-182 641.7 434 71.7
FAN18G3556 Fragaria x ananassa HOM05D005140 ORTHO05D006288 7.9e-182 641.0 396 79.3
HanXRQChr03g0089631 Helianthus annuus HOM05D005140 ORTHO05D006288 1.0e-181 640.6 424 73.3
A01p09690 Brassica napus HOM05D005140 ORTHO05D006288 5.7e-180 634.8 438 71.0
Aa31LG6G380 Aethionema arabicum HOM05D005140 ORTHO05D006288 1.3e-179 633.6 437 70.3
BraA01t00912Z Brassica rapa HOM05D005140 ORTHO05D006288 1.4e-178 630.2 444 69.8
ATR0665G273 Amborella trichopoda HOM05D005140 ORTHO05D006288 2.4e-178 629.4 424 70.8
BcaC09g51625 Brassica carinata HOM05D005140 ORTHO05D006288 1.5e-177 626.7 430 70.7
MBI04_g38568_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 4.5e-177 625.2 394 76.1
AUR62007191 Chenopodium quinoa HOM05D005140 ORTHO05D006288 1.0e-176 624.0 378 78.6
HPP92_020526 Vanilla planifolia HOM05D005140 ORTHO05D006288 1.0e-176 624.0 434 69.8
VMungo0239G0001 Vigna mungo HOM05D005140 ORTHO05D006288 1.0e-176 624.0 315 93.3
BcaNung06713 Brassica carinata HOM05D005140 ORTHO05D006288 9.4e-175 617.5 397 74.3
Aa31LG9G15140 Aethionema arabicum HOM05D005140 ORTHO05D006288 3.6e-174 615.5 420 70.2
Lj9A525T29 Lonicera japonica HOM05D005140 ORTHO05D006288 8.0e-174 614.4 381 77.2
HPP92_028085 Vanilla planifolia HOM05D005140 ORTHO05D006288 2.4e-170 602.8 436 68.6
SGA_v2.0_scaffold6G03141 Striga asiatica HOM05D005140 ORTHO05D006288 5.3e-170 601.7 387 74.4
HPP92_022002 Vanilla planifolia HOM05D005140 ORTHO05D006288 7.0e-170 601.3 433 66.7
Lj2C253G13 Lonicera japonica HOM05D005140 ORTHO05D006288 1.2e-169 600.5 457 65.9
CDE04G2928 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 3.5e-169 599.0 396 73.2
THA.LOC104814458 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 6.5e-168 594.7 425 68.0
MBI04_g46822_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 1.4e-157 560.5 343 77.3
AUR62018812 Chenopodium quinoa HOM05D005140 ORTHO05D006288 3.0e-157 559.3 306 84.0
Sc01g0007900 Simmondsia chinensis HOM05D005140 ORTHO05D006288 5.4e-154 548.5 319 79.0
Os05g0392100 Oryza sativa ssp. japonica HOM05D005140 ORTHO05D006288 4.0e-141 505.8 335 72.8
GSVIVG01013283001 Vitis vinifera HOM05D005140 ORTHO05D006288 3.9e-136 489.2 433 61.2
Hma1.2p1_1672F.1_g296780 Hydrangea macrophylla HOM05D005140 ORTHO05D006288 1.2e-134 484.2 311 74.6
Zm00001eb287280 Zea mays HOM05D005140 ORTHO05D006288 4.9e-131 472.2 293 76.1
AagrBONN_evm.TU.Sc2ySwM_344.2637 Anthoceros agrestis HOM05D005140 ORTHO05D006288 1.9e-127 460.3 401 57.1
Pp3c10_5020 Physcomitrium patens HOM05D005140 ORTHO05D006288 2.8e-126 456.4 452 52.7
SHI07711 Sapria himalayana HOM05D005140 ORTHO05D006288 3.5e-121 439.5 340 64.7
Mapoly0062s0029 Marchantia polymorpha HOM05D005140 ORTHO05D006288 8.1e-118 428.3 353 59.8
CDE12G0612 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 3.4e-116 422.9 325 63.7
SMO259G0041 Selaginella moellendorffii HOM05D005140 ORTHO05D006288 7.6e-108 395.2 325 56.0
BolC1t01096H Brassica oleracea HOM05D005140 ORTHO05D006288 2.1e-105 387.1 218 80.3
Oeu017029.1 Olea europaea HOM05D005140 ORTHO05D006288 2.2e-99 367.1 191 88.5
Cpa.g.sc98.58 Carica papaya HOM05D005140 ORTHO05D006288 1.9e-90 337.4 259 66.8
CBR_g48842 Chara braunii HOM05D005140 ORTHO05D006288 2.7e-89 333.6 427 45.4
Peaxi162Scf00715g00010 Petunia axillaris HOM05D005140 ORTHO05D006288 3.3e-87 326.6 230 70.9
Oeu062963.3 Olea europaea HOM05D005140 ORTHO05D006288 4.8e-70 269.6 257 56.4
QL12p008508 Quercus lobata HOM05D005140 ORTHO05D006288 7.4e-63 245.7 170 71.8
Psat1g146680 Pisum sativum HOM05D005140 ORTHO05D006288 3.7e-54 216.9 114 89.5
Thecc.03G238400 Theobroma cacao HOM05D005140 ORTHO05D006288 2.3e-48 197.6 167 63.5
Oeu017031.1 Olea europaea HOM05D005140 ORTHO05D006288 3.0e-48 197.2 138 73.9
Cpa.g.c32337.2 Carica papaya HOM05D005140 ORTHO05D006288 5.9e-36 156.4 108 72.2
MCO13G373 Micromonas commoda HOM05D005140 ORTHO05D006288 4.2e-34 150.2 337 33.5
SEGI_19334 Sequoiadendron giganteum HOM05D005140 ORTHO05D000001 1.3e-30 138.7 77 80.5
Cre07.g338400 Chlamydomonas reinhardtii HOM05D005140 ORTHO05D006288 8.3e-30 136.0 270 35.2
MD10G1199900 Malus domestica HOM05D005140 ORTHO05D006288 2.5e-26 124.4 79 75.9
GSVIVG01001794001 Vitis vinifera HOM05D005140 ORTHO05D006288 3.7e-22 110.5 80 66.2
Cfa024662 Carpinus fangiana HOM05D005140 ORTHO05D006288 6.6e-19 99.8 211 33.2
DCAR_016064 Daucus carota HOM05D005140 ORTHO05D006288 2.6e-15 87.8 52 75.0
ECA233G4689 Erigeron canadensis HOM05D005140 ORTHO05D006288 6.4e-14 83.2 85 54.1
Dinv00162 Davidia involucrata HOM05D005140 ORTHO05D006288 3.3e-10 70.9 58 58.6
Dinv25151 Davidia involucrata HOM05D005140 ORTHO05D006288 3.3e-10 70.9 58 58.6
Gohir.A08G083762 Gossypium hirsutum HOM05D005140 ORTHO05D006288 3.6e-09 67.4 29 93.1
BolC1t01095H Brassica oleracea HOM05D005140 ORTHO05D006288 9.9e-07 59.3 47 61.7
Haze_00507 Corylus avellana HOM05D005781 ORTHO05D165033 9.9e-07 59.3 32 75.0
Psat6g107920 Pisum sativum HOM05D032184 ORTHO05D330502 9.9e-07 59.3 28 89.3
QL12p008547 Quercus lobata HOM05D005140 ORTHO05D006288 8.4e-06 56.2 47 55.3


User provided reference genes

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