Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G121584 Glycine max HOM05D004511 ORTHO05D005348 9.9e-70 266.5 124 100.0
Glyma.10G121578 Glycine max HOM05D004511 ORTHO05D005348 1.8e-66 255.8 124 96.8
Glyma.10G121600 Glycine max HOM05D004511 ORTHO05D005348 3.9e-66 254.6 124 96.0
Glyma.10G121560 Glycine max HOM05D004511 ORTHO05D005348 4.0e-63 244.6 141 84.4
Glyma.20G073500 Glycine max HOM05D004511 ORTHO05D005348 2.1e-51 205.7 113 84.1
Glyma.10G130700 Glycine max HOM05D004511 ORTHO05D005348 2.3e-50 202.2 113 81.4
Phvul.007G232900 Phaseolus vulgaris HOM05D004511 ORTHO05D005348 1.9e-49 199.1 113 78.8
VMungo0720G1651 Vigna mungo HOM05D004511 ORTHO05D005348 4.3e-49 198.0 113 77.9
Prupe.1G050200 Prunus persica HOM05D004511 ORTHO05D005348 2.2e-48 195.7 113 79.6
FvH4_4g05000 Fragaria vesca HOM05D004511 ORTHO05D005348 2.8e-48 195.3 113 78.8
Lj6g0021678 Lotus japonicus HOM05D004511 ORTHO05D005348 6.3e-48 194.1 113 78.8
MD13G1223200 Malus domestica HOM05D004511 ORTHO05D005348 8.2e-48 193.7 113 78.8
FAN12G0867 Fragaria x ananassa HOM05D004511 ORTHO05D005348 2.4e-47 192.2 113 77.9
Ca_11884_v3 Cicer arietinum L. HOM05D004511 ORTHO05D005348 3.1e-47 191.8 113 77.0
GSVIVG01027931001 Vitis vinifera HOM05D004511 ORTHO05D005348 3.1e-47 191.8 113 77.0
Dinv29796 Davidia involucrata HOM05D004511 ORTHO05D005348 1.2e-46 189.9 113 77.0
Lalb_Chr02g0150721 Lupinus albus HOM05D004511 ORTHO05D005348 1.2e-46 189.9 111 78.4
CANSAT78G2334 Cannabis sativa HOM05D004511 ORTHO05D005348 1.5e-46 189.5 112 76.8
arahy.Tifrunner.gnm1.ann1.Z900IQ Arachis hypogaea HOM05D004511 ORTHO05D005348 2.6e-46 188.7 113 75.2
RcHm_v2.0_Chr4g0395811 Rosa chinensis HOM05D004511 ORTHO05D005348 2.6e-46 188.7 113 77.0
PGR004G0717 Punica granatum HOM05D004511 ORTHO05D005348 3.4e-46 188.3 113 76.1
Carub.0003s2466 Capsella rubella HOM05D004511 ORTHO05D005348 5.9e-46 187.6 112 75.0
Ciclev10004190m.g Citrus clementina HOM05D004511 ORTHO05D005348 5.9e-46 187.6 113 76.1
DCAR_027355 Daucus carota HOM05D004511 ORTHO05D005348 5.9e-46 187.6 113 73.5
Actinidia27093 Actinidia chinensis HOM05D004511 ORTHO05D005348 7.7e-46 187.2 113 76.1
arahy.Tifrunner.gnm1.ann1.QET6JI Arachis hypogaea HOM05D004511 ORTHO05D005348 7.7e-46 187.2 113 74.3
TWI73G0808 Tripterygium wilfordii HOM05D004511 ORTHO05D005348 7.7e-46 187.2 113 74.3
TAR365G1143 Trochodendron aralioides HOM05D004511 ORTHO05D005348 7.7e-46 187.2 113 74.3
CiPaw.01G177000 Carya illinoinensis HOM05D004511 ORTHO05D005348 1.0e-45 186.8 113 76.1
Aa31LG8G11050 Aethionema arabicum HOM05D004511 ORTHO05D005348 1.3e-45 186.4 112 74.1
Sc11g0002730 Simmondsia chinensis HOM05D004511 ORTHO05D005348 1.3e-45 186.4 113 73.5
Thhalv10002376m.g Eutrema salsugineum HOM05D004511 ORTHO05D005348 2.2e-45 185.7 112 73.2
AT3G24320 Arabidopsis thaliana HOM05D004511 ORTHO05D005348 2.9e-45 185.3 112 73.2
Sp3g22130 Schrenkiella parvula HOM05D004511 ORTHO05D005348 2.9e-45 185.3 112 73.2
Hund00475 Selenicereus undatus HOM05D004511 ORTHO05D005348 3.8e-45 184.9 124 70.2
THA.LOC104821629 Tarenaya hassleriana HOM05D004511 ORTHO05D005348 3.8e-45 184.9 112 74.1
AUR62011461 Chenopodium quinoa HOM05D004511 ORTHO05D005348 5.0e-45 184.5 112 75.9
Potri.010G065000 Populus trichocarpa HOM05D004511 ORTHO05D005348 5.0e-45 184.5 112 75.0
QL06p021350 Quercus lobata HOM05D004511 ORTHO05D005348 5.0e-45 184.5 113 76.1
Cc03_g06420 Coffea canephora HOM05D004511 ORTHO05D005348 6.5e-45 184.1 113 74.3
Ah.01g020260 Amaranthus hybridus HOM05D004511 ORTHO05D005348 8.5e-45 183.7 112 74.1
BcaC06g35683 Brassica carinata HOM05D004511 ORTHO05D005348 8.5e-45 183.7 112 73.2
A07p07990 Brassica napus HOM05D004511 ORTHO05D005348 8.5e-45 183.7 112 72.3
C07p12050 Brassica napus HOM05D004511 ORTHO05D005348 8.5e-45 183.7 112 73.2
BolC7t41673H Brassica oleracea HOM05D004511 ORTHO05D005348 8.5e-45 183.7 112 73.2
BraA07t28586Z Brassica rapa HOM05D004511 ORTHO05D005348 8.5e-45 183.7 112 72.3
ECA248G2418 Erigeron canadensis HOM05D004511 ORTHO05D005348 8.5e-45 183.7 113 71.7
CARHR100420 Cardamine hirsuta HOM05D004511 ORTHO05D005348 1.1e-44 183.3 112 72.3
Thecc.04G266800 Theobroma cacao HOM05D004511 ORTHO05D005348 1.1e-44 183.3 113 75.2
Migut.G00563 Erythranthe guttata HOM05D004511 ORTHO05D005348 1.4e-44 183.0 113 72.6
Aqoxy5G00136 Aquilegia oxysepala HOM05D004511 ORTHO05D005348 2.5e-44 182.2 113 69.9
BcaB06g26614 Brassica carinata HOM05D004511 ORTHO05D005348 2.5e-44 182.2 112 72.3
ClCG05G003940 Citrullus lanatus HOM05D004511 ORTHO05D005348 3.2e-44 181.8 112 74.1
Duzib151G0197 Durio zibethinus HOM05D004511 ORTHO05D005348 4.2e-44 181.4 113 75.2
Sed0014740 Sechium edule HOM05D004511 ORTHO05D005348 4.2e-44 181.4 112 72.3
MSTRG.9851 Avicennia marina HOM05D004511 ORTHO05D005348 5.5e-44 181.0 113 72.6
PSO210G5810 Papaver somniferum HOM05D004511 ORTHO05D005348 5.5e-44 181.0 112 71.4
Nn1g02989 Nelumbo nucifera HOM05D004511 ORTHO05D005348 7.2e-44 180.6 111 73.0
Medtr1g045670 Medicago truncatula HOM05D004511 ORTHO05D005348 1.2e-43 179.9 112 73.2
PSO170G1037 Papaver somniferum HOM05D004511 ORTHO05D005348 1.2e-43 179.9 112 70.5
SGA_v2.0_scaffold67G22677 Striga asiatica HOM05D004511 ORTHO05D005348 1.6e-43 179.5 113 70.8
CsaV3_3G011610 Cucumis sativus L. HOM05D004511 ORTHO05D005348 2.1e-43 179.1 112 73.2
Gorai.006G254800 Gossypium raimondii HOM05D004511 ORTHO05D005348 2.1e-43 179.1 113 73.5
Rhsim04G0171100 Rhododendron simsii HOM05D004511 ORTHO05D005348 2.1e-43 179.1 110 77.3
Zm00001eb426210 Zea mays HOM05D004511 ORTHO05D005348 2.1e-43 179.1 112 72.3
Gohir.A09G230900 Gossypium hirsutum HOM05D004511 ORTHO05D005348 2.7e-43 178.7 113 73.5
Psat6g108520 Pisum sativum HOM05D004511 ORTHO05D005348 2.7e-43 178.7 113 71.7
Ca_07387_v3 Cicer arietinum L. HOM05D004511 ORTHO05D005348 7.9e-43 177.2 113 74.3
Os04g0507000 Oryza sativa ssp. japonica HOM05D004511 ORTHO05D005348 7.9e-43 177.2 112 71.4
Nitab4.5_0005154g0040 Nicotiana tabacum HOM05D004511 ORTHO05D005348 1.4e-42 176.4 111 72.1
Gohir.D09G232000 Gossypium hirsutum HOM05D004511 ORTHO05D005348 1.8e-42 176.0 113 72.6
AL3G39770 Arabidopsis lyrata HOM05D004511 ORTHO05D005348 3.0e-42 175.3 122 66.4
Nitab4.5_0001041g0180 Nicotiana tabacum HOM05D004511 ORTHO05D005348 6.7e-42 174.1 111 71.2
HanXRQChr01g0023051 Helianthus annuus HOM05D004511 ORTHO05D005348 2.0e-41 172.6 113 67.3
Sopen09g033830 Solanum pennellii HOM05D004511 ORTHO05D005348 3.3e-41 171.8 111 71.2
MELO3C006369.2 Cucumis melo HOM05D004511 ORTHO05D005348 4.3e-41 171.4 119 68.1
HanXRQChr06g0182821 Helianthus annuus HOM05D004511 ORTHO05D005348 4.3e-41 171.4 112 69.6
Solyc09g090870.3 Solanum lycopersicum HOM05D004511 ORTHO05D005348 4.3e-41 171.4 111 71.2
EL10Ac9g21855 Beta vulgaris HOM05D004511 ORTHO05D005348 2.2e-40 169.1 150 56.7
HPP92_015182 Vanilla planifolia HOM05D004511 ORTHO05D005348 8.2e-40 167.2 113 68.1
COL.COLO4_15984 Corchorus olitorius HOM05D004511 ORTHO05D005348 1.1e-39 166.8 124 66.1
ATR0787G210 Amborella trichopoda HOM05D004511 ORTHO05D005348 1.8e-39 166.0 112 67.0
SHI00817 Sapria himalayana HOM05D004511 ORTHO05D005348 6.9e-39 164.1 110 69.1
SEGI_11740 Sequoiadendron giganteum HOM05D004511 ORTHO05D005348 6.9e-39 164.1 113 64.6
AUR62016594 Chenopodium quinoa HOM05D004511 ORTHO05D005348 4.5e-38 161.4 105 70.5
Haze_11474 Corylus avellana HOM05D004511 ORTHO05D005348 1.0e-37 160.2 98 73.5
unitig_747.g21671 Utricularia gibba HOM05D004511 ORTHO05D005348 2.1e-35 152.5 135 57.0
Mapoly0067s0046 Marchantia polymorpha HOM05D004511 ORTHO05D005348 2.7e-35 152.1 112 56.2
vmacro08561 Vaccinium macrocarpon HOM05D004511 ORTHO05D005348 2.0e-33 146.0 82 79.3
Eucgr.H02905 Eucalyptus grandis HOM05D004511 ORTHO05D005348 4.4e-33 144.8 89 74.2
Ca_26419_v3 Cicer arietinum L. HOM05D004511 ORTHO05D005348 2.8e-32 142.1 106 66.0
SEGI_26830 Sequoiadendron giganteum HOM05D004511 ORTHO05D005348 8.2e-32 140.6 95 66.3
Lsat_1_v5_gn_2_41221 Lactuca sativa HOM05D004511 ORTHO05D005348 3.1e-31 138.7 84 72.6
Peaxi162Scf00531g00610 Petunia axillaris HOM05D004511 ORTHO05D005348 7.0e-31 137.5 88 72.7
SMO364G0324 Selaginella moellendorffii HOM05D004511 ORTHO05D005348 9.1e-31 137.1 97 60.8
AL2G22890 Arabidopsis lyrata HOM05D004511 ORTHO05D005348 4.2e-28 128.3 87 70.1
Pp3c8_22090 Physcomitrium patens HOM05D004511 ORTHO05D005348 5.5e-28 127.9 112 51.8
Oeu061869.1 Olea europaea HOM05D004511 ORTHO05D005348 1.2e-27 126.7 74 75.7
Atru.chr4.1900 Acer truncatum HOM05D004511 ORTHO05D005348 1.6e-27 126.3 74 74.3
Pp3c23_17640 Physcomitrium patens HOM05D004511 ORTHO05D005348 1.0e-26 123.6 112 47.3
CSS0045058 Camellia sinensis var. sinensis HOM05D004511 ORTHO05D005348 1.8e-26 122.9 65 84.6
CSS0023992 Camellia sinensis var. sinensis HOM05D004511 ORTHO05D005348 5.2e-26 121.3 65 83.1
Ca_30594_v3 Cicer arietinum L. HOM05D004511 ORTHO05D005348 1.3e-24 116.7 72 76.4
Lj6A637T62 Lonicera japonica HOM05D004511 ORTHO05D005348 5.5e-20 101.3 56 80.4
TPR.G7054 Trifolium pratense HOM05D004511 ORTHO05D005348 1.2e-19 100.1 59 76.3
FAN17G0167 Fragaria x ananassa HOM05D004511 ORTHO05D005348 8.0e-19 97.4 113 47.8
PRCOL_00002937 Prasinoderma coloniale HOM05D004511 ORTHO05D005348 4.8e-16 88.2 93 44.1
MCO07G727 Micromonas commoda HOM05D004511 ORTHO05D005348 2.4e-15 85.9 113 43.4
Cpa.g.c32688 Carica papaya HOM05D004511 ORTHO05D005348 1.2e-11 73.6 40 77.5
CDE08G1007 Ceratophyllum demersum HOM05D004511 ORTHO05D005348 1.8e-10 69.7 40 72.5
TPR.G23996 Trifolium pratense HOM05D004511 ORTHO05D005348 7.5e-09 64.3 113 35.4
Lsat_1_v5_gn_1_68561 Lactuca sativa HOM05D004511 ORTHO05D005348 5.4e-07 58.2 69 46.4


User provided reference genes

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