Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G121578 Glycine max HOM05D004511 ORTHO05D005348 2.7e-70 268.5 127 100.0
Glyma.10G121584 Glycine max HOM05D004511 ORTHO05D005348 4.0e-66 254.6 124 96.8
Glyma.10G121600 Glycine max HOM05D004511 ORTHO05D005348 5.8e-65 250.8 124 96.0
Glyma.10G121560 Glycine max HOM05D004511 ORTHO05D005348 6.0e-62 240.7 141 84.4
Glyma.20G073500 Glycine max HOM05D004511 ORTHO05D005348 1.9e-52 209.1 115 85.2
Glyma.10G130700 Glycine max HOM05D004511 ORTHO05D005348 2.1e-51 205.7 115 82.6
Phvul.007G232900 Phaseolus vulgaris HOM05D004511 ORTHO05D005348 1.8e-50 202.6 115 80.0
VMungo0720G1651 Vigna mungo HOM05D004511 ORTHO05D005348 4.0e-50 201.4 115 79.1
Lj6g0021678 Lotus japonicus HOM05D004511 ORTHO05D005348 5.8e-49 197.6 115 80.0
Prupe.1G050200 Prunus persica HOM05D004511 ORTHO05D005348 7.6e-49 197.2 115 79.1
FvH4_4g05000 Fragaria vesca HOM05D004511 ORTHO05D005348 1.7e-48 196.1 115 78.3
GSVIVG01027931001 Vitis vinifera HOM05D004511 ORTHO05D005348 2.2e-48 195.7 115 78.3
MD13G1223200 Malus domestica HOM05D004511 ORTHO05D005348 2.9e-48 195.3 115 78.3
FAN12G0867 Fragaria x ananassa HOM05D004511 ORTHO05D005348 1.4e-47 193.0 115 77.4
Dinv29796 Davidia involucrata HOM05D004511 ORTHO05D005348 1.9e-47 192.6 115 77.4
Ca_11884_v3 Cicer arietinum L. HOM05D004511 ORTHO05D005348 2.4e-47 192.2 113 77.9
PGR004G0717 Punica granatum HOM05D004511 ORTHO05D005348 3.2e-47 191.8 115 77.4
RcHm_v2.0_Chr4g0395811 Rosa chinensis HOM05D004511 ORTHO05D005348 4.2e-47 191.4 115 77.4
Ciclev10004190m.g Citrus clementina HOM05D004511 ORTHO05D005348 5.4e-47 191.0 115 77.4
Lalb_Chr02g0150721 Lupinus albus HOM05D004511 ORTHO05D005348 5.4e-47 191.0 115 76.5
TAR365G1143 Trochodendron aralioides HOM05D004511 ORTHO05D005348 5.4e-47 191.0 115 75.7
Aa31LG8G11050 Aethionema arabicum HOM05D004511 ORTHO05D005348 7.1e-47 190.7 115 75.7
Carub.0003s2466 Capsella rubella HOM05D004511 ORTHO05D005348 7.1e-47 190.7 115 75.7
TWI73G0808 Tripterygium wilfordii HOM05D004511 ORTHO05D005348 7.1e-47 190.7 115 75.7
DCAR_027355 Daucus carota HOM05D004511 ORTHO05D005348 9.3e-47 190.3 115 73.9
Actinidia27093 Actinidia chinensis HOM05D004511 ORTHO05D005348 1.2e-46 189.9 115 76.5
CANSAT78G2334 Cannabis sativa HOM05D004511 ORTHO05D005348 1.2e-46 189.9 115 75.7
arahy.Tifrunner.gnm1.ann1.Z900IQ Arachis hypogaea HOM05D004511 ORTHO05D005348 1.6e-46 189.5 115 74.8
CiPaw.01G177000 Carya illinoinensis HOM05D004511 ORTHO05D005348 2.1e-46 189.1 115 76.5
Thhalv10002376m.g Eutrema salsugineum HOM05D004511 ORTHO05D005348 2.7e-46 188.7 115 73.9
AT3G24320 Arabidopsis thaliana HOM05D004511 ORTHO05D005348 3.5e-46 188.3 115 73.9
Sp3g22130 Schrenkiella parvula HOM05D004511 ORTHO05D005348 3.5e-46 188.3 115 73.9
arahy.Tifrunner.gnm1.ann1.QET6JI Arachis hypogaea HOM05D004511 ORTHO05D005348 4.6e-46 188.0 115 73.9
Hund00475 Selenicereus undatus HOM05D004511 ORTHO05D005348 4.6e-46 188.0 126 71.4
THA.LOC104821629 Tarenaya hassleriana HOM05D004511 ORTHO05D005348 4.6e-46 188.0 115 74.8
CARHR100420 Cardamine hirsuta HOM05D004511 ORTHO05D005348 6.0e-46 187.6 115 73.9
Potri.010G065000 Populus trichocarpa HOM05D004511 ORTHO05D005348 6.0e-46 187.6 115 75.7
Sc11g0002730 Simmondsia chinensis HOM05D004511 ORTHO05D005348 7.8e-46 187.2 115 73.9
Ah.01g020260 Amaranthus hybridus HOM05D004511 ORTHO05D005348 1.0e-45 186.8 115 74.8
BcaC06g35683 Brassica carinata HOM05D004511 ORTHO05D005348 1.0e-45 186.8 115 73.9
A07p07990 Brassica napus HOM05D004511 ORTHO05D005348 1.0e-45 186.8 115 73.0
C07p12050 Brassica napus HOM05D004511 ORTHO05D005348 1.0e-45 186.8 115 73.9
BolC7t41673H Brassica oleracea HOM05D004511 ORTHO05D005348 1.0e-45 186.8 115 73.9
BraA07t28586Z Brassica rapa HOM05D004511 ORTHO05D005348 1.0e-45 186.8 115 73.0
Cc03_g06420 Coffea canephora HOM05D004511 ORTHO05D005348 1.0e-45 186.8 115 74.8
Thecc.04G266800 Theobroma cacao HOM05D004511 ORTHO05D005348 1.0e-45 186.8 115 76.5
QL06p021350 Quercus lobata HOM05D004511 ORTHO05D005348 1.3e-45 186.4 115 76.5
Aqoxy5G00136 Aquilegia oxysepala HOM05D004511 ORTHO05D005348 1.7e-45 186.0 115 71.3
Migut.G00563 Erythranthe guttata HOM05D004511 ORTHO05D005348 2.3e-45 185.7 115 73.0
BcaB06g26614 Brassica carinata HOM05D004511 ORTHO05D005348 3.0e-45 185.3 115 73.0
ECA248G2418 Erigeron canadensis HOM05D004511 ORTHO05D005348 3.0e-45 185.3 115 71.3
AUR62011461 Chenopodium quinoa HOM05D004511 ORTHO05D005348 3.9e-45 184.9 115 75.7
Duzib151G0197 Durio zibethinus HOM05D004511 ORTHO05D005348 3.9e-45 184.9 115 76.5
ClCG05G003940 Citrullus lanatus HOM05D004511 ORTHO05D005348 6.6e-45 184.1 116 73.3
PSO210G5810 Papaver somniferum HOM05D004511 ORTHO05D005348 6.6e-45 184.1 115 72.2
Nn1g02989 Nelumbo nucifera HOM05D004511 ORTHO05D005348 1.1e-44 183.3 115 73.0
Medtr1g045670 Medicago truncatula HOM05D004511 ORTHO05D005348 1.5e-44 183.0 115 73.9
PSO170G1037 Papaver somniferum HOM05D004511 ORTHO05D005348 1.5e-44 183.0 115 71.3
MSTRG.9851 Avicennia marina HOM05D004511 ORTHO05D005348 1.9e-44 182.6 115 73.0
Psat6g108520 Pisum sativum HOM05D004511 ORTHO05D005348 2.5e-44 182.2 115 73.0
Sed0014740 Sechium edule HOM05D004511 ORTHO05D005348 2.5e-44 182.2 115 71.3
SGA_v2.0_scaffold67G22677 Striga asiatica HOM05D004511 ORTHO05D005348 2.5e-44 182.2 115 71.3
Gorai.006G254800 Gossypium raimondii HOM05D004511 ORTHO05D005348 4.3e-44 181.4 115 73.9
Gohir.A09G230900 Gossypium hirsutum HOM05D004511 ORTHO05D005348 5.6e-44 181.0 115 73.9
Ca_07387_v3 Cicer arietinum L. HOM05D004511 ORTHO05D005348 7.3e-44 180.6 115 75.7
Zm00001eb426210 Zea mays HOM05D004511 ORTHO05D005348 7.3e-44 180.6 115 71.3
Rhsim04G0171100 Rhododendron simsii HOM05D004511 ORTHO05D005348 9.6e-44 180.3 113 76.1
CsaV3_3G011610 Cucumis sativus L. HOM05D004511 ORTHO05D005348 1.3e-43 179.9 115 72.2
Os04g0507000 Oryza sativa ssp. japonica HOM05D004511 ORTHO05D005348 2.8e-43 178.7 115 70.4
AL3G39770 Arabidopsis lyrata HOM05D004511 ORTHO05D005348 3.6e-43 178.3 125 67.2
Gohir.D09G232000 Gossypium hirsutum HOM05D004511 ORTHO05D005348 3.6e-43 178.3 115 73.0
Nitab4.5_0005154g0040 Nicotiana tabacum HOM05D004511 ORTHO05D005348 6.2e-43 177.6 115 70.4
HanXRQChr01g0023051 Helianthus annuus HOM05D004511 ORTHO05D005348 3.1e-42 175.3 115 67.8
Nitab4.5_0001041g0180 Nicotiana tabacum HOM05D004511 ORTHO05D005348 3.1e-42 175.3 115 69.6
Sopen09g033830 Solanum pennellii HOM05D004511 ORTHO05D005348 1.5e-41 172.9 115 69.6
Solyc09g090870.3 Solanum lycopersicum HOM05D004511 ORTHO05D005348 2.0e-41 172.6 115 69.6
MELO3C006369.2 Cucumis melo HOM05D004511 ORTHO05D005348 2.6e-41 172.2 122 67.2
HanXRQChr06g0182821 Helianthus annuus HOM05D004511 ORTHO05D005348 3.4e-41 171.8 112 70.5
EL10Ac9g21855 Beta vulgaris HOM05D004511 ORTHO05D005348 5.8e-41 171.0 153 56.9
COL.COLO4_15984 Corchorus olitorius HOM05D004511 ORTHO05D005348 9.9e-41 170.2 126 67.5
HPP92_015182 Vanilla planifolia HOM05D004511 ORTHO05D005348 3.8e-40 168.3 115 67.8
ATR0787G210 Amborella trichopoda HOM05D004511 ORTHO05D005348 6.4e-40 167.5 115 67.0
SHI00817 Sapria himalayana HOM05D004511 ORTHO05D005348 1.1e-39 166.8 113 69.9
SEGI_11740 Sequoiadendron giganteum HOM05D004511 ORTHO05D005348 1.1e-39 166.8 115 65.2
AUR62016594 Chenopodium quinoa HOM05D004511 ORTHO05D005348 7.9e-38 160.6 109 69.7
Haze_11474 Corylus avellana HOM05D004511 ORTHO05D005348 1.3e-37 159.8 101 72.3
unitig_747.g21671 Utricularia gibba HOM05D004511 ORTHO05D005348 5.6e-36 154.5 137 57.7
Mapoly0067s0046 Marchantia polymorpha HOM05D004511 ORTHO05D005348 2.1e-35 152.5 112 57.1
vmacro08561 Vaccinium macrocarpon HOM05D004511 ORTHO05D005348 9.0e-34 147.1 82 80.5
Eucgr.H02905 Eucalyptus grandis HOM05D004511 ORTHO05D005348 2.6e-33 145.6 89 75.3
Ca_26419_v3 Cicer arietinum L. HOM05D004511 ORTHO05D005348 1.3e-32 143.3 109 66.1
SEGI_26830 Sequoiadendron giganteum HOM05D004511 ORTHO05D005348 6.4e-32 141.0 97 66.0
Lsat_1_v5_gn_2_41221 Lactuca sativa HOM05D004511 ORTHO05D005348 1.9e-31 139.4 84 73.8
SMO364G0324 Selaginella moellendorffii HOM05D004511 ORTHO05D005348 5.5e-31 137.9 97 60.8
Peaxi162Scf00531g00610 Petunia axillaris HOM05D004511 ORTHO05D005348 1.2e-30 136.7 92 69.6
AL2G22890 Arabidopsis lyrata HOM05D004511 ORTHO05D005348 2.5e-28 129.0 87 71.3
Pp3c8_22090 Physcomitrium patens HOM05D004511 ORTHO05D005348 3.3e-28 128.6 115 51.3
Oeu061869.1 Olea europaea HOM05D004511 ORTHO05D005348 5.6e-28 127.9 74 77.0
Atru.chr4.1900 Acer truncatum HOM05D004511 ORTHO05D005348 7.4e-28 127.5 74 75.7
Pp3c23_17640 Physcomitrium patens HOM05D004511 ORTHO05D005348 9.6e-28 127.1 115 48.7
CSS0045058 Camellia sinensis var. sinensis HOM05D004511 ORTHO05D005348 2.4e-26 122.5 78 74.4
CSS0023992 Camellia sinensis var. sinensis HOM05D004511 ORTHO05D005348 6.9e-26 120.9 78 73.1
Ca_30594_v3 Cicer arietinum L. HOM05D004511 ORTHO05D005348 5.8e-25 117.9 72 77.8
TPR.G7054 Trifolium pratense HOM05D004511 ORTHO05D005348 2.5e-20 102.4 60 76.7
Lj6A637T62 Lonicera japonica HOM05D004511 ORTHO05D005348 1.3e-19 100.1 56 80.4
FAN17G0167 Fragaria x ananassa HOM05D004511 ORTHO05D005348 2.4e-18 95.9 115 47.8
PRCOL_00002937 Prasinoderma coloniale HOM05D004511 ORTHO05D005348 2.9e-16 89.0 93 45.2
MCO07G727 Micromonas commoda HOM05D004511 ORTHO05D005348 9.4e-15 84.0 113 43.4
Cpa.g.c32688 Carica papaya HOM05D004511 ORTHO05D005348 3.7e-11 72.0 40 77.5
CDE08G1007 Ceratophyllum demersum HOM05D004511 ORTHO05D005348 5.3e-10 68.2 40 72.5
TPR.G23996 Trifolium pratense HOM05D004511 ORTHO05D005348 7.7e-09 64.3 115 35.7
Lsat_1_v5_gn_1_68561 Lactuca sativa HOM05D004511 ORTHO05D005348 2.5e-07 59.3 69 47.8


User provided reference genes

Program Settings