Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G120000 Glycine max HOM05D004026 ORTHO05D004712 2.5e-30 134.8 68 100.0
Dinv25856 Davidia involucrata HOM05D004026 ORTHO05D004712 1.0e-23 112.8 61 93.4
Duzib093G0799 Durio zibethinus HOM05D004026 ORTHO05D004712 1.0e-23 112.8 61 93.4
Duzib116G0179 Durio zibethinus HOM05D004026 ORTHO05D004712 1.0e-23 112.8 61 93.4
ECA236G1806 Erigeron canadensis HOM05D004026 ORTHO05D004712 1.0e-23 112.8 61 93.4
HanXRQChr06g0182631 Helianthus annuus HOM05D004026 ORTHO05D004712 1.0e-23 112.8 61 93.4
HanXRQChr11g0339331 Helianthus annuus HOM05D004026 ORTHO05D004712 1.0e-23 112.8 61 93.4
Lsat_1_v5_gn_7_71840 Lactuca sativa HOM05D004026 ORTHO05D004712 1.0e-23 112.8 61 93.4
Manes.18G091400 Manihot esculenta HOM05D004026 ORTHO05D004712 1.0e-23 112.8 61 93.4
Potri.002G068800 Populus trichocarpa HOM05D004026 ORTHO05D004712 1.0e-23 112.8 61 93.4
Potri.005G191600 Populus trichocarpa HOM05D004026 ORTHO05D004712 1.0e-23 112.8 61 93.4
QL02p024017 Quercus lobata HOM05D004026 ORTHO05D004712 1.0e-23 112.8 61 93.4
Sabra02G0054100 Salix brachista HOM05D004026 ORTHO05D004712 1.0e-23 112.8 61 93.4
Sabra05G0146400 Salix brachista HOM05D004026 ORTHO05D004712 1.0e-23 112.8 61 93.4
TWI60G1706 Tripterygium wilfordii HOM05D004026 ORTHO05D004712 1.0e-23 112.8 61 93.4
GSVIVG01034520001 Vitis vinifera HOM05D004026 ORTHO05D004712 1.0e-23 112.8 61 93.4
Atru.chr13.2143 Acer truncatum HOM05D004026 ORTHO05D004712 1.3e-23 112.5 61 91.8
Ciclev10002950m.g Citrus clementina HOM05D004026 ORTHO05D004712 1.3e-23 112.5 61 91.8
Eucgr.F02710 Eucalyptus grandis HOM05D004026 ORTHO05D004712 1.3e-23 112.5 61 91.8
Gohir.A05G243000 Gossypium hirsutum HOM05D004026 ORTHO05D004712 1.3e-23 112.5 61 91.8
Gohir.D05G244500 Gossypium hirsutum HOM05D004026 ORTHO05D004712 1.3e-23 112.5 61 91.8
Gorai.009G253600 Gossypium raimondii HOM05D004026 ORTHO05D004712 1.3e-23 112.5 61 91.8
Nn1g06097 Nelumbo nucifera HOM05D004026 ORTHO05D004712 1.3e-23 112.5 61 91.8
PGR042G0059 Punica granatum HOM05D004026 ORTHO05D004712 1.3e-23 112.5 61 91.8
TAR381G0202 Trochodendron aralioides HOM05D004026 ORTHO05D004712 1.3e-23 112.5 61 91.8
TAR628G0743 Trochodendron aralioides HOM05D004026 ORTHO05D004712 1.3e-23 112.5 61 91.8
Cpa.g.sc2145.2 Carica papaya HOM05D004026 ORTHO05D004712 2.2e-23 111.7 61 91.8
CiPaw.16G013200 Carya illinoinensis HOM05D004026 ORTHO05D004712 2.2e-23 111.7 61 91.8
Haze_17748 Corylus avellana HOM05D004026 ORTHO05D004712 2.2e-23 111.7 61 91.8
Dinv41090 Davidia involucrata HOM05D004026 ORTHO05D004712 2.2e-23 111.7 61 91.8
Glyma.16G167900 Glycine max HOM05D004026 ORTHO05D004712 2.2e-23 111.7 61 91.8
Lj2g0026454 Lotus japonicus HOM05D004026 ORTHO05D004712 2.2e-23 111.7 61 91.8
QL09p017237 Quercus lobata HOM05D004026 ORTHO05D004712 2.2e-23 111.7 61 91.8
Hund26698 Selenicereus undatus HOM05D004026 ORTHO05D004712 2.2e-23 111.7 61 91.8
Thecc.08G150600 Theobroma cacao HOM05D004026 ORTHO05D004712 2.2e-23 111.7 61 91.8
Actinidia06668 Actinidia chinensis HOM05D004026 ORTHO05D004712 2.9e-23 111.3 61 91.8
CANSAT25G0019 Cannabis sativa HOM05D004026 ORTHO05D004712 2.9e-23 111.3 61 90.2
FvH4_2g13861 Fragaria vesca HOM05D004026 ORTHO05D004712 2.9e-23 111.3 61 91.8
FAN15G1801 Fragaria x ananassa HOM05D004026 ORTHO05D004712 2.9e-23 111.3 61 91.8
FAN20G2578 Fragaria x ananassa HOM05D004026 ORTHO05D004712 2.9e-23 111.3 61 91.8
FAN24G0951 Fragaria x ananassa HOM05D004026 ORTHO05D004712 2.9e-23 111.3 61 91.8
FAN27G2615 Fragaria x ananassa HOM05D004026 ORTHO05D004712 2.9e-23 111.3 61 91.8
MD10G1024500 Malus domestica HOM05D004026 ORTHO05D004712 2.9e-23 111.3 61 91.8
MD10G1024600 Malus domestica HOM05D004026 ORTHO05D004712 2.9e-23 111.3 61 91.8
Nn5g28727 Nelumbo nucifera HOM05D004026 ORTHO05D004712 2.9e-23 111.3 61 90.2
Phvul.004G095700 Phaseolus vulgaris HOM05D004026 ORTHO05D004712 2.9e-23 111.3 61 90.2
Prupe.3G148200 Prunus persica HOM05D004026 ORTHO05D004712 2.9e-23 111.3 61 91.8
RcHm_v2.0_Chr6g0275571 Rosa chinensis HOM05D004026 ORTHO05D004712 2.9e-23 111.3 61 91.8
TAR625G0830 Trochodendron aralioides HOM05D004026 ORTHO05D004712 2.9e-23 111.3 61 90.2
CDE06G1840 Ceratophyllum demersum HOM05D004026 ORTHO05D004712 3.8e-23 110.9 61 90.2
CDE08G0955 Ceratophyllum demersum HOM05D004026 ORTHO05D004712 3.8e-23 110.9 61 90.2
MD05G1024000 Malus domestica HOM05D004026 ORTHO05D004712 3.8e-23 110.9 61 90.2
TWI34G0684 Tripterygium wilfordii HOM05D004026 ORTHO05D004712 3.8e-23 110.9 61 91.8
Gohir.D03G060607 Gossypium hirsutum HOM05D004026 ORTHO05D004712 5.0e-23 110.5 61 90.2
Gorai.002G055500 Gossypium raimondii HOM05D004026 ORTHO05D004712 5.0e-23 110.5 61 90.2
Hma1.2p1_0105F.1_g050760 Hydrangea macrophylla HOM05D004026 ORTHO05D004712 5.0e-23 110.5 61 91.8
Prupe.8G028400 Prunus persica HOM05D004026 ORTHO05D004712 5.0e-23 110.5 61 88.5
Sed0019016 Sechium edule HOM05D004026 ORTHO05D004712 5.0e-23 110.5 61 90.2
SEGI_01220 Sequoiadendron giganteum HOM05D004026 ORTHO05D004712 5.0e-23 110.5 61 88.5
Ah.05g167900 Amaranthus hybridus HOM05D004026 ORTHO05D004712 6.5e-23 110.2 60 91.7
arahy.Tifrunner.gnm1.ann1.9PQ1GY Arachis hypogaea HOM05D004026 ORTHO05D004712 6.5e-23 110.2 60 91.7
arahy.Tifrunner.gnm1.ann1.XJQY2Y Arachis hypogaea HOM05D004026 ORTHO05D004712 6.5e-23 110.2 60 91.7
EL10Ac1g01537 Beta vulgaris HOM05D004026 ORTHO05D004712 6.5e-23 110.2 60 91.7
ClCG08G006960 Citrullus lanatus HOM05D004026 ORTHO05D004712 6.5e-23 110.2 61 90.2
Glyma.02G082300 Glycine max HOM05D004026 ORTHO05D004712 6.5e-23 110.2 61 88.5
MBI09_g18621_MAGBIO Magnolia biondii HOM05D004026 ORTHO05D004712 6.5e-23 110.2 60 91.7
Rhsim06G0071000 Rhododendron simsii HOM05D004026 ORTHO05D004712 6.5e-23 110.2 61 90.2
Rhsim06G0135800 Rhododendron simsii HOM05D004026 ORTHO05D004712 6.5e-23 110.2 61 90.2
Rhsim10G0141800 Rhododendron simsii HOM05D004026 ORTHO05D004712 6.5e-23 110.2 61 90.2
Sed0010346 Sechium edule HOM05D004026 ORTHO05D004712 6.5e-23 110.2 61 90.2
THA.LOC104812039 Tarenaya hassleriana HOM05D004026 ORTHO05D004712 6.5e-23 110.2 61 88.5
THA.LOC104813712 Tarenaya hassleriana HOM05D004026 ORTHO05D004712 6.5e-23 110.2 61 88.5
CAN.G249.12 Capsicum annuum HOM05D004026 ORTHO05D004712 8.5e-23 109.8 61 90.2
Manes.02G178900 Manihot esculenta HOM05D004026 ORTHO05D004712 8.5e-23 109.8 61 90.2
Phvul.004G129000 Phaseolus vulgaris HOM05D004026 ORTHO05D004712 8.5e-23 109.8 61 88.5
Solyc11g005370.2 Solanum lycopersicum HOM05D004026 ORTHO05D004712 8.5e-23 109.8 61 90.2
Sopen11g001380 Solanum pennellii HOM05D004026 ORTHO05D004712 8.5e-23 109.8 61 90.2
PGSC0003DMG400003988 Solanum tuberosum HOM05D004026 ORTHO05D004712 8.5e-23 109.8 61 90.2
Aqoxy5G02098 Aquilegia oxysepala HOM05D004026 ORTHO05D004712 1.1e-22 109.4 61 88.5
Migut.N03226 Erythranthe guttata HOM05D004026 ORTHO05D004712 1.1e-22 109.4 61 90.2
Nitab4.5_0000964g0020 Nicotiana tabacum HOM05D004026 ORTHO05D004712 1.1e-22 109.4 61 88.5
AagrBONN_evm.TU.Sc2ySwM_117.2023 Anthoceros agrestis HOM05D004026 ORTHO05D004712 1.5e-22 109.0 61 88.5
Dinv09936 Davidia involucrata HOM05D004026 ORTHO05D004712 1.5e-22 109.0 61 88.5
Migut.C01015 Erythranthe guttata HOM05D004026 ORTHO05D004712 1.5e-22 109.0 61 88.5
Gohir.A02G112705 Gossypium hirsutum HOM05D004026 ORTHO05D004712 1.5e-22 109.0 61 88.5
unitig_744.g24567 Utricularia gibba HOM05D004026 ORTHO05D004712 1.5e-22 109.0 61 88.5
HPP92_016150 Vanilla planifolia HOM05D004026 ORTHO05D004712 1.9e-22 108.6 61 86.9
CSS0019157 Camellia sinensis var. sinensis HOM05D004026 ORTHO05D004712 2.5e-22 108.2 61 88.5
Ca_28109_v3 Cicer arietinum L. HOM05D004026 ORTHO05D004712 2.5e-22 108.2 59 91.5
Lalb_Chr01g0009621 Lupinus albus HOM05D004026 ORTHO05D004712 2.5e-22 108.2 59 91.5
Mapoly0008s0084 Marchantia polymorpha HOM05D004026 ORTHO05D004712 2.5e-22 108.2 61 85.2
Medtr4g083170 Medicago truncatula HOM05D004026 ORTHO05D004712 2.5e-22 108.2 59 91.5
Psat7g153480 Pisum sativum HOM05D004026 ORTHO05D004712 2.5e-22 108.2 59 91.5
SalBow6G5104 Salvia bowleyana HOM05D004026 ORTHO05D004712 2.5e-22 108.2 61 88.5
MELO3C008344.2 Cucumis melo HOM05D004026 ORTHO05D004712 3.2e-22 107.8 61 88.5
Lj1g0021939 Lotus japonicus HOM05D004026 ORTHO05D004712 3.2e-22 107.8 58 93.1
Nitab4.5_0000004g0160 Nicotiana tabacum HOM05D004026 ORTHO05D004712 3.2e-22 107.8 61 86.9
Oeu046026.1 Olea europaea HOM05D004026 ORTHO05D004712 3.2e-22 107.8 61 88.5
PSO541G1854 Papaver somniferum HOM05D004026 ORTHO05D004712 3.2e-22 107.8 59 89.8
PSO675G7538 Papaver somniferum HOM05D004026 ORTHO05D004712 3.2e-22 107.8 59 89.8
unitig_21.g20177 Utricularia gibba HOM05D004026 ORTHO05D004712 4.2e-22 107.5 61 86.9
Zm00001eb146730 Zea mays HOM05D004026 ORTHO05D004712 4.2e-22 107.5 60 88.3
Cc10_g14760 Coffea canephora HOM05D004026 ORTHO05D004712 7.2e-22 106.7 60 86.7
Lalb_Chr03g0035271 Lupinus albus HOM05D004026 ORTHO05D004712 7.2e-22 106.7 59 89.8
Peaxi162Scf00025g02218 Petunia axillaris HOM05D004026 ORTHO05D004712 7.2e-22 106.7 62 90.3
TPR.G14063 Trifolium pratense HOM05D004026 ORTHO05D004712 7.2e-22 106.7 59 89.8
TPR.G8174 Trifolium pratense HOM05D004026 ORTHO05D004712 7.2e-22 106.7 59 89.8
AUR62013577 Chenopodium quinoa HOM05D004026 ORTHO05D004712 1.6e-21 105.5 60 85.0
Peaxi162Scf00583g00530 Petunia axillaris HOM05D004026 ORTHO05D004712 1.6e-21 105.5 62 88.7
Pp3c24_12260 Physcomitrium patens HOM05D004026 ORTHO05D004712 1.6e-21 105.5 61 83.6
SMO169G0100 Selaginella moellendorffii HOM05D004026 ORTHO05D004712 1.6e-21 105.5 61 83.6
ATR0772G183 Amborella trichopoda HOM05D004026 ORTHO05D004712 2.1e-21 105.1 60 83.3
Hma1.2p1_0006F.1_g004910 Hydrangea macrophylla HOM05D004026 ORTHO05D004712 2.1e-21 105.1 61 85.2
Thhalv10019321m.g Eutrema salsugineum HOM05D004026 ORTHO05D004712 3.6e-21 104.4 61 80.3
Aa31LG4G6900 Aethionema arabicum HOM05D004026 ORTHO05D004712 8.0e-21 103.2 61 78.7
BcaB02g07078 Brassica carinata HOM05D004026 ORTHO05D004712 1.0e-20 102.8 61 78.7
BcaB05g25014 Brassica carinata HOM05D004026 ORTHO05D004712 1.0e-20 102.8 61 78.7
BcaC03g15707 Brassica carinata HOM05D004026 ORTHO05D004712 1.0e-20 102.8 61 78.7
BcaC08g45508 Brassica carinata HOM05D004026 ORTHO05D004712 1.0e-20 102.8 61 78.7
BcaC08g47186 Brassica carinata HOM05D004026 ORTHO05D004712 1.0e-20 102.8 61 78.7
A02p20950 Brassica napus HOM05D004026 ORTHO05D004712 1.0e-20 102.8 61 78.7
A07p28330 Brassica napus HOM05D004026 ORTHO05D004712 1.0e-20 102.8 61 78.7
A07p42450 Brassica napus HOM05D004026 ORTHO05D004712 1.0e-20 102.8 61 78.7
C02p34120 Brassica napus HOM05D004026 ORTHO05D004712 1.0e-20 102.8 61 78.7
C06p31770 Brassica napus HOM05D004026 ORTHO05D004712 1.0e-20 102.8 61 78.7
C06p51010 Brassica napus HOM05D004026 ORTHO05D004712 1.0e-20 102.8 61 78.7
BolC2t09428H Brassica oleracea HOM05D004026 ORTHO05D004712 1.0e-20 102.8 61 78.7
BolC6t38306H Brassica oleracea HOM05D004026 ORTHO05D004712 1.0e-20 102.8 61 78.7
BolC6t40126H Brassica oleracea HOM05D004026 ORTHO05D004712 1.0e-20 102.8 61 78.7
BraA02t07126Z Brassica rapa HOM05D004026 ORTHO05D004712 1.0e-20 102.8 61 78.7
BraA07t30470Z Brassica rapa HOM05D004026 ORTHO05D004712 1.0e-20 102.8 61 78.7
BraA07t31770Z Brassica rapa HOM05D004026 ORTHO05D004712 1.0e-20 102.8 61 78.7
CARHR070370 Cardamine hirsuta HOM05D004026 ORTHO05D004712 1.0e-20 102.8 61 78.7
Sp5g31990 Schrenkiella parvula HOM05D004026 ORTHO05D004712 1.0e-20 102.8 61 78.7
AT1G76860 Arabidopsis thaliana HOM05D004026 ORTHO05D004712 1.4e-20 102.4 61 80.3
DCAR_014432 Daucus carota HOM05D004026 ORTHO05D004712 1.8e-20 102.1 56 91.1
Os01g0866700 Oryza sativa ssp. japonica HOM05D004026 ORTHO05D004712 1.8e-20 102.1 56 91.1
AL2G36980 Arabidopsis lyrata HOM05D004026 ORTHO05D004712 3.0e-20 101.3 61 78.7
Carub.0002s2374 Capsella rubella HOM05D004026 ORTHO05D004712 4.0e-20 100.9 61 77.0
Aa31LG7G5300 Aethionema arabicum HOM05D004026 ORTHO05D004712 5.2e-20 100.5 61 75.4
AL1G34240 Arabidopsis lyrata HOM05D004026 ORTHO05D004712 8.8e-20 99.8 61 75.4
BcaB07g32108 Brassica carinata HOM05D004026 ORTHO05D004712 8.8e-20 99.8 61 75.4
A06p17220 Brassica napus HOM05D004026 ORTHO05D004712 8.8e-20 99.8 61 75.4
BraA06t24824Z Brassica rapa HOM05D004026 ORTHO05D004712 8.8e-20 99.8 61 75.4
CARHR021640 Cardamine hirsuta HOM05D004026 ORTHO05D004712 8.8e-20 99.8 61 75.4
Sp1g18830 Schrenkiella parvula HOM05D004026 ORTHO05D004712 8.8e-20 99.8 61 75.4
AT1G21190 Arabidopsis thaliana HOM05D004026 ORTHO05D004712 1.2e-19 99.4 61 73.8
Carub.0001s2062 Capsella rubella HOM05D004026 ORTHO05D004712 1.2e-19 99.4 61 73.8
MCO12G407 Micromonas commoda HOM05D004026 ORTHO05D004712 3.4e-19 97.8 59 76.3
SalBow4G0880 Salvia bowleyana HOM05D004026 ORTHO05D004712 4.4e-19 97.4 59 81.4
MSTRG.22373 Avicennia marina HOM05D004026 ORTHO05D004712 6.3e-18 93.6 58 77.6
Cre16.g662300 Chlamydomonas reinhardtii HOM05D004026 ORTHO05D004712 1.1e-17 92.8 62 75.8
PRCOL_00001118 Prasinoderma coloniale HOM05D004026 ORTHO05D004712 2.4e-17 91.7 62 71.0
BolC5t30689H Brassica oleracea HOM05D004026 ORTHO05D004712 3.1e-17 91.3 72 63.9
COL.COLO4_37834 Corchorus olitorius HOM05D004026 ORTHO05D004712 5.3e-17 90.5 63 79.4
BcaC05g26025 Brassica carinata HOM05D004026 ORTHO05D004712 1.3e-15 85.9 72 61.1
C05p19920 Brassica napus HOM05D004026 ORTHO05D004712 1.3e-15 85.9 72 61.1
Haze_27742 Corylus avellana HOM05D004026 ORTHO05D004712 4.2e-14 80.9 58 69.0
vmacro12827 Vaccinium macrocarpon HOM05D004026 ORTHO05D004712 7.2e-14 80.1 127 42.5
Cfa018326 Carpinus fangiana HOM05D004026 ORTHO05D004712 6.1e-13 77.0 98 51.0
Cfa023910 Carpinus fangiana HOM05D004026 ORTHO05D004712 1.7e-10 68.9 58 53.4
AUR62026713 Chenopodium quinoa HOM05D004026 ORTHO05D004712 2.2e-10 68.6 60 61.7
CBR_g88561 Chara braunii HOM05D000019 ORTHO05D000002 3.7e-10 67.8 60 60.0
CsaV3_6G005290 Cucumis sativus L. HOM05D004026 ORTHO05D004712 4.5e-08 60.8 86 50.0
CsaV3_1G019700 Cucumis sativus L. HOM05D004026 ORTHO05D004712 7.2e-06 53.5 31 87.1


User provided reference genes

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