Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G084300 Glycine max HOM05D005824 ORTHO05D007029 0.0e+00 1361.3 707 100.0
Glyma.02G192500 Glycine max HOM05D005824 ORTHO05D007029 0.0e+00 1231.5 707 90.8
VMungo0720G2244 Vigna mungo HOM05D005824 ORTHO05D007029 8.7e-304 1046.6 707 78.2
Phvul.007G265900 Phaseolus vulgaris HOM05D005824 ORTHO05D007029 5.0e-299 1030.8 708 76.8
Lalb_Chr02g0154321 Lupinus albus HOM05D005824 ORTHO05D007029 4.1e-285 984.6 713 72.7
TPR.G12910 Trifolium pratense HOM05D005824 ORTHO05D007029 7.4e-279 963.8 707 71.9
Lj5g0026124 Lotus japonicus HOM05D005824 ORTHO05D007029 1.3e-278 963.0 709 71.8
Lj3g0001001 Lotus japonicus HOM05D005824 ORTHO05D007029 1.8e-277 959.1 709 71.4
Ca_11665_v3 Cicer arietinum L. HOM05D005824 ORTHO05D007029 1.4e-272 943.0 707 71.0
Psat6g118640 Pisum sativum HOM05D005824 ORTHO05D007029 3.0e-272 941.8 721 70.2
Medtr1g055080 Medicago truncatula HOM05D005824 ORTHO05D007029 6.7e-272 940.6 707 70.7
TPR.G21237 Trifolium pratense HOM05D005824 ORTHO05D007029 9.7e-271 936.8 721 69.9
arahy.Tifrunner.gnm1.ann1.E5V6X9 Arachis hypogaea HOM05D005824 ORTHO05D007029 3.5e-268 928.3 714 69.2
arahy.Tifrunner.gnm1.ann1.S86EGP Arachis hypogaea HOM05D005824 ORTHO05D007029 1.9e-266 922.5 714 68.8
GSVIVG01031305001 Vitis vinifera HOM05D005824 ORTHO05D007029 6.2e-201 704.9 719 55.1
QL07p026733 Quercus lobata HOM05D005824 ORTHO05D007029 1.5e-199 700.3 708 56.5
CSS0029355 Camellia sinensis var. sinensis HOM05D005824 ORTHO05D007029 3.8e-198 695.7 709 56.0
CiPaw.10G020000 Carya illinoinensis HOM05D005824 ORTHO05D007029 8.2e-193 677.9 710 52.8
Potri.015G010900 Populus trichocarpa HOM05D005824 ORTHO05D007029 2.4e-192 676.4 725 52.4
Dinv24497 Davidia involucrata HOM05D005824 ORTHO05D007029 1.7e-190 670.2 705 53.2
Sabra15G0009000 Salix brachista HOM05D005824 ORTHO05D007029 2.5e-189 666.4 738 51.4
Cfa020078 Carpinus fangiana HOM05D005824 ORTHO05D007029 3.2e-189 666.0 710 54.4
Rhsim11G0099700 Rhododendron simsii HOM05D005824 ORTHO05D007029 9.7e-186 654.4 711 52.6
Manes.06G027100 Manihot esculenta HOM05D005824 ORTHO05D007029 1.5e-183 647.1 709 53.6
Sopen01g044470 Solanum pennellii HOM05D005824 ORTHO05D007029 5.9e-183 645.2 707 53.0
Haze_20113 Corylus avellana HOM05D005824 ORTHO05D007029 5.1e-179 632.1 771 49.2
Nitab4.5_0009690g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 8.8e-179 631.3 711 50.4
Cpa.g.sc48.209 Carica papaya HOM05D005824 ORTHO05D007029 1.1e-178 630.9 718 50.7
Thecc.09G352900 Theobroma cacao HOM05D005824 ORTHO05D007029 1.1e-178 630.9 718 51.9
PGSC0003DMG400018251 Solanum tuberosum HOM05D005824 ORTHO05D007029 1.9e-178 630.2 708 52.3
CAN.G1374.10 Capsicum annuum HOM05D005824 ORTHO05D007029 7.4e-178 628.2 707 51.9
Cc02_g35570 Coffea canephora HOM05D005824 ORTHO05D007029 4.8e-177 625.5 766 48.8
Gohir.A03G155800 Gossypium hirsutum HOM05D005824 ORTHO05D007029 6.3e-177 625.2 720 51.0
Oeu061927.1 Olea europaea HOM05D005824 ORTHO05D007029 1.1e-176 624.4 754 48.7
Gorai.005G200700 Gossypium raimondii HOM05D005824 ORTHO05D007029 9.1e-176 621.3 734 50.1
TAR362G0448 Trochodendron aralioides HOM05D005824 ORTHO05D007029 1.4e-173 614.0 708 50.4
Lj5A322T66 Lonicera japonica HOM05D005824 ORTHO05D007029 5.5e-173 612.1 682 52.1
MSTRG.15631 Avicennia marina HOM05D005824 ORTHO05D007029 4.7e-172 609.0 720 49.6
Eucgr.B01798 Eucalyptus grandis HOM05D005824 ORTHO05D007029 5.1e-171 605.5 716 49.7
MBI19_g32704_MAGBIO Magnolia biondii HOM05D005824 ORTHO05D007029 4.4e-170 602.4 734 49.2
vmacro01596 Vaccinium macrocarpon HOM05D005824 ORTHO05D007029 7.4e-170 601.7 701 50.2
AUR62006798 Chenopodium quinoa HOM05D005824 ORTHO05D007029 1.7e-169 600.5 763 47.7
SalBow7G3942 Salvia bowleyana HOM05D005824 ORTHO05D007029 5.3e-168 595.5 712 47.9
TWI38G0226 Tripterygium wilfordii HOM05D005824 ORTHO05D007029 1.5e-167 594.0 710 50.6
Sc09g0002470 Simmondsia chinensis HOM05D005824 ORTHO05D007029 5.9e-167 592.0 721 48.7
AUR62000450 Chenopodium quinoa HOM05D005824 ORTHO05D007029 1.0e-166 591.3 782 46.4
Hund21844 Selenicereus undatus HOM05D005824 ORTHO05D007029 1.7e-166 590.5 804 46.3
CANSAT54G1845 Cannabis sativa HOM05D005824 ORTHO05D007029 1.4e-165 587.4 719 49.7
Prupe.6G306900 Prunus persica HOM05D005824 ORTHO05D007029 1.9e-165 587.0 781 47.0
Migut.B00860 Erythranthe guttata HOM05D005824 ORTHO05D007029 2.5e-165 586.6 713 47.8
Gohir.D02G178900 Gossypium hirsutum HOM05D005824 ORTHO05D007029 2.5e-165 586.6 734 48.2
EL10Ac4g09532 Beta vulgaris HOM05D005824 ORTHO05D007029 5.5e-165 585.5 737 47.5
Atru.chr12.1601 Acer truncatum HOM05D005824 ORTHO05D007029 1.1e-162 577.8 740 48.1
ClCG07G011770 Citrullus lanatus HOM05D005824 ORTHO05D007029 7.0e-160 568.5 714 47.5
THA.LOC104821746 Tarenaya hassleriana HOM05D005824 ORTHO05D007029 9.1e-160 568.2 735 47.1
MELO3C017799.2 Cucumis melo HOM05D005824 ORTHO05D007029 1.6e-159 567.4 722 47.6
CsaV3_4G002430 Cucumis sativus L. HOM05D005824 ORTHO05D007029 5.9e-159 565.5 723 46.6
Nn2g14227 Nelumbo nucifera HOM05D005824 ORTHO05D007029 2.2e-158 563.5 709 48.0
SGA_v2.0_scaffold33G13450 Striga asiatica HOM05D005824 ORTHO05D007029 2.2e-158 563.5 712 45.9
Nitab4.5_0000185g0360 Nicotiana tabacum HOM05D005824 ORTHO05D007029 1.2e-156 557.8 708 46.8
PSO339G3868 Papaver somniferum HOM05D005824 ORTHO05D007029 1.6e-156 557.4 713 48.2
Aqoxy2G02580 Aquilegia oxysepala HOM05D005824 ORTHO05D007029 6.1e-156 555.4 712 45.9
PSO384G0570 Papaver somniferum HOM05D005824 ORTHO05D007029 2.6e-154 550.1 716 46.8
ECA247G2466 Erigeron canadensis HOM05D005824 ORTHO05D007029 2.8e-153 546.6 711 47.0
Duzib150G0567 Durio zibethinus HOM05D005824 ORTHO05D007029 9.1e-152 541.6 698 48.1
RcHm_v2.0_Chr3g0458051 Rosa chinensis HOM05D005824 ORTHO05D007029 9.1e-152 541.6 771 45.8
COL.COLO4_11087 Corchorus olitorius HOM05D005824 ORTHO05D007029 1.2e-151 541.2 712 45.4
MD12G1202100 Malus domestica HOM05D005824 ORTHO05D007029 1.6e-151 540.8 774 44.6
PSO017G5895 Papaver somniferum HOM05D005824 ORTHO05D007029 3.8e-150 536.2 711 45.7
Sed0007659 Sechium edule HOM05D005824 ORTHO05D007029 5.5e-149 532.3 724 45.3
Thhalv10003721m.g Eutrema salsugineum HOM05D005824 ORTHO05D007029 1.0e-147 528.1 745 43.9
MD04G1189300 Malus domestica HOM05D005824 ORTHO05D007029 3.0e-147 526.6 758 44.5
Hma1.2p1_1243F.1_g269980 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 5.2e-147 525.8 622 49.5
Sp2g21220 Schrenkiella parvula HOM05D005824 ORTHO05D007029 1.5e-146 524.2 736 44.3
FAN14G3202 Fragaria x ananassa HOM05D005824 ORTHO05D007029 7.5e-146 521.9 772 43.8
Carub.0006s2449 Capsella rubella HOM05D005824 ORTHO05D007029 9.8e-146 521.5 733 43.9
FvH4_6g08180 Fragaria vesca HOM05D005824 ORTHO05D007029 9.8e-146 521.5 772 43.8
Duzib168G0004 Durio zibethinus HOM05D005824 ORTHO05D007029 1.6e-143 514.2 710 44.5
PSO063G2449 Papaver somniferum HOM05D005824 ORTHO05D007029 4.5e-143 512.7 715 44.9
Ah.10g027060 Amaranthus hybridus HOM05D005824 ORTHO05D007029 1.7e-142 510.8 761 42.8
Aa31LG11G9880 Aethionema arabicum HOM05D005824 ORTHO05D007029 2.3e-142 510.4 728 43.4
CARHR186810 Cardamine hirsuta HOM05D005824 ORTHO05D007029 2.3e-139 500.4 748 41.8
Peaxi162Scf00357g00429 Petunia axillaris HOM05D005824 ORTHO05D007029 4.0e-139 499.6 658 47.6
AT5G26760 Arabidopsis thaliana HOM05D005824 ORTHO05D007029 1.2e-138 498.0 764 41.5
FAN09G3961 Fragaria x ananassa HOM05D005824 ORTHO05D007029 7.0e-136 488.8 767 41.6
AL6G38630 Arabidopsis lyrata HOM05D005824 ORTHO05D007029 2.7e-135 486.9 860 38.5
unitig_748.g6998 Utricularia gibba HOM05D005824 ORTHO05D000260 1.3e-134 484.6 694 43.2
DCAR_005271 Daucus carota HOM05D005824 ORTHO05D007029 7.5e-130 468.8 719 43.4
FAN05G5613 Fragaria x ananassa HOM05D005824 ORTHO05D007029 7.0e-128 462.2 746 42.4
C02p58640 Brassica napus HOM05D005824 ORTHO05D007029 5.6e-125 452.6 827 38.3
CDE01G0540 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 2.1e-124 450.7 705 41.1
BolC2t11924H Brassica oleracea HOM05D005824 ORTHO05D007029 4.4e-122 443.0 839 37.1
Lsat_1_v5_gn_9_78801 Lactuca sativa HOM05D005824 ORTHO05D007029 5.8e-122 442.6 673 43.4
A02p39030 Brassica napus HOM05D005824 ORTHO05D007029 3.2e-120 436.8 862 36.7
Nitab4.5_0002783g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 9.2e-120 435.3 713 41.0
BraA02t08872Z Brassica rapa HOM05D005824 ORTHO05D007029 2.1e-119 434.1 856 36.6
ATR0693G066 Amborella trichopoda HOM05D005824 ORTHO05D007029 1.0e-118 431.8 694 40.5
HanXRQChr12g0362901 Helianthus annuus HOM05D005824 ORTHO05D007029 1.7e-113 414.5 710 39.7
PGR083G1123 Punica granatum HOM05D005824 ORTHO05D007029 2.4e-112 410.6 553 46.1
FAN02G4519 Fragaria x ananassa HOM05D005824 ORTHO05D007029 7.1e-112 409.1 746 39.4
Ciclev10011677m.g Citrus clementina HOM05D005824 ORTHO05D007029 1.6e-108 397.9 386 55.7
BcaNung06222 Brassica carinata HOM05D005824 ORTHO05D007029 1.8e-107 394.4 824 35.9
Os05g0134300 Oryza sativa ssp. japonica HOM05D005824 ORTHO05D007029 1.2e-100 371.7 746 36.6
C07p41490 Brassica napus HOM05D005824 ORTHO05D007029 2.1e-87 327.8 723 33.7
BolC7t44682H Brassica oleracea HOM05D005824 ORTHO05D007029 6.7e-86 322.8 725 34.2
BcaNung03676 Brassica carinata HOM05D005824 ORTHO05D007029 2.4e-83 314.3 714 32.9
Actinidia35501 Actinidia chinensis HOM05D005824 ORTHO05D007029 3.1e-83 313.9 696 33.0
Zm00001eb354720 Zea mays HOM05D005824 ORTHO05D007029 1.6e-76 291.6 629 36.1
Solyc01g101010.4 Solanum lycopersicum HOM05D005824 ORTHO05D007029 4.0e-75 287.0 249 60.2
Gohir.A08G201701 Gossypium hirsutum HOM05D005824 ORTHO05D007029 4.3e-69 266.9 712 31.9
Mapoly0075s0015 Marchantia polymorpha HOM05D005824 ORTHO05D007029 2.8e-68 264.2 730 29.3
HPP92_021934 Vanilla planifolia HOM05D005824 ORTHO05D007029 5.1e-62 243.4 357 41.7
Pp3c6_10400 Physcomitrium patens HOM05D005824 ORTHO05D007029 2.9e-57 227.6 889 27.7
Hma1.2p1_1553F.1_g290340 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 9.4e-56 222.6 688 31.5
Nitab4.5_0000185g0370 Nicotiana tabacum HOM05D005824 ORTHO05D007029 1.6e-55 221.9 274 44.5
SGA_v2.0_scaffold438G51629 Striga asiatica HOM05D005824 ORTHO05D007029 1.1e-53 215.7 196 54.1
SMO203G0090 Selaginella moellendorffii HOM05D005824 ORTHO05D007029 1.1e-51 209.1 713 27.3
SEGI_20129 Sequoiadendron giganteum HOM05D005824 ORTHO05D007029 2.5e-48 198.0 393 36.4
AagrBONN_evm.TU.Sc2ySwM_117.2728 Anthoceros agrestis HOM05D005824 ORTHO05D007029 4.1e-43 180.6 719 25.0
VMungo0251G1262 Vigna mungo HOM05D005824 ORTHO05D007029 7.0e-43 179.9 212 56.6
A06p36990 Brassica napus HOM05D005824 ORTHO05D007029 1.2e-39 169.1 176 48.3
BraA06t26625Z Brassica rapa HOM05D005824 ORTHO05D007029 1.2e-39 169.1 176 48.3
Oeu060660.1 Olea europaea HOM05D005824 ORTHO05D007029 6.8e-38 163.3 126 62.7
CBR_g20185 Chara braunii HOM05D005824 ORTHO05D007029 1.2e-34 152.5 377 29.4
Dinv30929 Davidia involucrata HOM05D005824 ORTHO05D007029 1.1e-32 146.0 121 62.8
HPP92_021933 Vanilla planifolia HOM05D005824 ORTHO05D007029 1.8e-30 138.7 205 39.5
CANSAT54G0922 Cannabis sativa HOM05D005824 ORTHO05D007029 3.5e-26 124.4 199 41.2
Cfa020079 Carpinus fangiana HOM05D005824 ORTHO05D007029 2.9e-25 121.3 82 68.3
Nitab4.5_0000185g0350 Nicotiana tabacum HOM05D005824 ORTHO05D007029 2.6e-21 108.2 103 53.4
CDE12G0845 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 3.7e-20 104.4 90 56.7
Zm00001eb056090 Zea mays HOM05D000739 ORTHO05D007029 1.0e-17 96.3 112 45.5
Zm00001eb289330 Zea mays HOM05D005824 ORTHO05D007029 1.2e-15 89.4 100 47.0
AUR62009842 Chenopodium quinoa HOM05D003327 ORTHO05D004535 2.9e-12 78.2 174 37.9
QL03p009284 Quercus lobata HOM05D005824 ORTHO05D007029 1.1e-08 66.2 54 61.1


User provided reference genes

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