Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.10G053602 Glycine max HOM05D003708 ORTHO05D004452 4.1e-65 251.1 119 100.0
Glyma.13G140700 Glycine max HOM05D003708 ORTHO05D004452 1.2e-48 196.4 99 92.9
Haze_02339 Corylus avellana HOM05D003708 ORTHO05D004452 3.9e-47 191.4 99 88.9
Haze_02345 Corylus avellana HOM05D003708 ORTHO05D004452 3.9e-47 191.4 99 88.9
Lalb_Chr02g0156131 Lupinus albus HOM05D003708 ORTHO05D004452 1.1e-46 189.9 99 87.9
DCAR_009121 Daucus carota HOM05D003708 ORTHO05D004452 1.5e-46 189.5 99 85.9
Gohir.A13G033200 Gossypium hirsutum HOM05D003708 ORTHO05D004452 1.5e-46 189.5 99 87.9
Gohir.D12G029400 Gossypium hirsutum HOM05D003708 ORTHO05D004452 1.5e-46 189.5 99 87.9
Gohir.D13G031100 Gossypium hirsutum HOM05D003708 ORTHO05D004452 1.5e-46 189.5 99 87.9
Gorai.008G030100 Gossypium raimondii HOM05D003708 ORTHO05D004452 1.5e-46 189.5 99 87.9
Gorai.013G035500 Gossypium raimondii HOM05D003708 ORTHO05D004452 1.5e-46 189.5 99 87.9
Thecc.02G081300 Theobroma cacao HOM05D003708 ORTHO05D004452 1.5e-46 189.5 99 87.9
Cfa011043 Carpinus fangiana HOM05D003708 ORTHO05D004452 1.9e-46 189.1 99 87.9
Haze_24305 Corylus avellana HOM05D003708 ORTHO05D004452 1.9e-46 189.1 99 87.9
Phvul.001G177300 Phaseolus vulgaris HOM05D003708 ORTHO05D004452 1.9e-46 189.1 99 87.9
VMungo1383G2129 Vigna mungo HOM05D003708 ORTHO05D004452 2.5e-46 188.7 99 86.9
Duzib248G1007 Durio zibethinus HOM05D003708 ORTHO05D004452 4.3e-46 188.0 99 85.9
Manes.04G073800 Manihot esculenta HOM05D003708 ORTHO05D004452 4.3e-46 188.0 99 86.9
Potri.009G119300 Populus trichocarpa HOM05D003708 ORTHO05D004452 4.3e-46 188.0 99 87.9
QL11p044193 Quercus lobata HOM05D003708 ORTHO05D004452 4.3e-46 188.0 99 85.9
Sabra09G0091800 Salix brachista HOM05D003708 ORTHO05D004452 4.3e-46 188.0 99 85.9
COL.COLO4_25976 Corchorus olitorius HOM05D003708 ORTHO05D004452 5.6e-46 187.6 99 85.9
Lalb_Chr20g0112711 Lupinus albus HOM05D003708 ORTHO05D004452 5.6e-46 187.6 99 87.9
QL11p044250 Quercus lobata HOM05D003708 ORTHO05D004452 9.6e-46 186.8 99 84.8
vmacro02084 Vaccinium macrocarpon HOM05D003708 ORTHO05D004452 9.6e-46 186.8 99 85.9
Prupe.8G092300 Prunus persica HOM05D003708 ORTHO05D004452 1.6e-45 186.0 99 85.9
TWI79G1570 Tripterygium wilfordii HOM05D003708 ORTHO05D004452 1.6e-45 186.0 99 84.8
Cc02_g17290 Coffea canephora HOM05D003708 ORTHO05D004452 2.1e-45 185.7 99 83.8
GSVIVG01023813001 Vitis vinifera HOM05D003708 ORTHO05D004452 2.1e-45 185.7 99 84.8
GSVIVG01034280001 Vitis vinifera HOM05D003708 ORTHO05D004452 2.1e-45 185.7 99 84.8
Actinidia00541 Actinidia chinensis HOM05D003708 ORTHO05D004452 2.8e-45 185.3 102 82.4
CANSAT56G1534 Cannabis sativa HOM05D003708 ORTHO05D004452 2.8e-45 185.3 99 85.9
CANSAT56G4510 Cannabis sativa HOM05D003708 ORTHO05D004452 2.8e-45 185.3 99 85.9
Dinv42045 Davidia involucrata HOM05D003708 ORTHO05D004452 2.8e-45 185.3 99 84.8
Sc08g0000610 Simmondsia chinensis HOM05D003708 ORTHO05D004452 2.8e-45 185.3 99 84.8
arahy.Tifrunner.gnm1.ann1.F2CJ1Q Arachis hypogaea HOM05D003708 ORTHO05D004452 3.6e-45 184.9 99 84.8
arahy.Tifrunner.gnm1.ann1.U6BYIQ Arachis hypogaea HOM05D003708 ORTHO05D004452 3.6e-45 184.9 99 84.8
CSS0004507 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 3.6e-45 184.9 99 84.8
CiPaw.06G133600 Carya illinoinensis HOM05D003708 ORTHO05D004452 3.6e-45 184.9 99 85.9
Dinv23495 Davidia involucrata HOM05D003708 ORTHO05D004452 3.6e-45 184.9 99 84.8
Glyma.03G181200 Glycine max HOM05D003708 ORTHO05D004452 3.6e-45 184.9 99 86.9
Lj5A195T74 Lonicera japonica HOM05D003708 ORTHO05D004452 3.6e-45 184.9 99 84.8
Rhsim01G0265100 Rhododendron simsii HOM05D003708 ORTHO05D004452 3.6e-45 184.9 99 84.8
Hund06256 Selenicereus undatus HOM05D003708 ORTHO05D004452 3.6e-45 184.9 99 84.8
MSTRG.5405 Avicennia marina HOM05D003708 ORTHO05D004452 4.8e-45 184.5 99 83.8
Nitab4.5_0002169g0050 Nicotiana tabacum HOM05D003708 ORTHO05D004452 4.8e-45 184.5 99 83.8
Peaxi162Scf00016g00522 Petunia axillaris HOM05D003708 ORTHO05D004452 4.8e-45 184.5 99 84.8
CSS0012852 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 6.2e-45 184.1 99 84.8
Glyma.19G182000 Glycine max HOM05D003708 ORTHO05D004452 6.2e-45 184.1 99 86.9
Medtr5g022700 Medicago truncatula HOM05D003708 ORTHO05D004452 6.2e-45 184.1 99 86.9
Oeu020743.1 Olea europaea HOM05D003708 ORTHO05D004452 6.2e-45 184.1 99 82.8
Potri.004G157500 Populus trichocarpa HOM05D003708 ORTHO05D004452 6.2e-45 184.1 99 85.9
TPR.G10514 Trifolium pratense HOM05D003708 ORTHO05D004452 6.2e-45 184.1 99 86.9
Ciclev10028284m.g Citrus clementina HOM05D003708 ORTHO05D004452 8.1e-45 183.7 99 84.8
Lj1g0019257 Lotus japonicus HOM05D003708 ORTHO05D004452 8.1e-45 183.7 99 85.9
TAR381G0899 Trochodendron aralioides HOM05D003708 ORTHO05D004452 8.1e-45 183.7 99 83.8
Psat2g152880 Pisum sativum HOM05D003708 ORTHO05D004452 1.1e-44 183.3 99 84.8
TWI31G0810 Tripterygium wilfordii HOM05D003708 ORTHO05D004452 1.1e-44 183.3 99 83.8
Lj9C375G10 Lonicera japonica HOM05D002765 ORTHO05D003083 1.4e-44 183.0 98 83.7
Atru.chr5.3061 Acer truncatum HOM05D003708 ORTHO05D004452 1.8e-44 182.6 99 82.8
Ah.01g019180 Amaranthus hybridus HOM05D003708 ORTHO05D004452 1.8e-44 182.6 99 82.8
MELO3C023315.2 Cucumis melo HOM05D003708 ORTHO05D004452 3.1e-44 181.8 99 82.8
CsaV3_2G014950 Cucumis sativus L. HOM05D003708 ORTHO05D004452 3.1e-44 181.8 99 82.8
CSS0011384 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 4.0e-44 181.4 99 83.8
CAN.G1058.12 Capsicum annuum HOM05D003708 ORTHO05D004452 4.0e-44 181.4 99 81.8
ClCG11G004220 Citrullus lanatus HOM05D003708 ORTHO05D004452 4.0e-44 181.4 99 83.8
Cpa.g.sc106.13 Carica papaya HOM05D003708 ORTHO05D004452 5.3e-44 181.0 99 82.8
Eucgr.G01640 Eucalyptus grandis HOM05D003708 ORTHO05D004452 5.3e-44 181.0 99 83.8
MD10G1070600 Malus domestica HOM05D003708 ORTHO05D004452 5.3e-44 181.0 99 83.8
Sed0019329 Sechium edule HOM05D003708 ORTHO05D004452 5.3e-44 181.0 99 82.8
Sopen01g052040 Solanum pennellii HOM05D003708 ORTHO05D004452 5.3e-44 181.0 99 80.8
PGSC0003DMG400000737 Solanum tuberosum HOM05D003708 ORTHO05D004452 5.3e-44 181.0 99 80.8
Aqoxy3G00171 Aquilegia oxysepala HOM05D003708 ORTHO05D004452 6.9e-44 180.6 99 82.8
AUR62011292 Chenopodium quinoa HOM05D003708 ORTHO05D004452 6.9e-44 180.6 99 82.8
AUR62016767 Chenopodium quinoa HOM05D003708 ORTHO05D004452 6.9e-44 180.6 99 82.8
Ca_24926_v3 Cicer arietinum L. HOM05D003708 ORTHO05D004452 6.9e-44 180.6 99 84.8
MBI16_g07876_MAGBIO Magnolia biondii HOM05D003708 ORTHO05D004452 6.9e-44 180.6 99 82.8
MD05G1063100 Malus domestica HOM05D003708 ORTHO05D004452 6.9e-44 180.6 99 82.8
Sed0010943 Sechium edule HOM05D003708 ORTHO05D004452 6.9e-44 180.6 99 82.8
SGA_v2.0_scaffold5G02835 Striga asiatica HOM05D003708 ORTHO05D004452 6.9e-44 180.6 99 81.8
ATR0585G004 Amborella trichopoda HOM05D003708 ORTHO05D004452 9.0e-44 180.3 99 81.8
Migut.N01253 Erythranthe guttata HOM05D003708 ORTHO05D004452 1.2e-43 179.9 99 81.8
Solyc01g109850.3 Solanum lycopersicum HOM05D003708 ORTHO05D004452 1.5e-43 179.5 99 80.8
Nn5g29691 Nelumbo nucifera HOM05D003708 ORTHO05D004452 2.0e-43 179.1 99 83.8
Oeu029157.1 Olea europaea HOM05D003708 ORTHO05D004452 2.0e-43 179.1 99 81.8
Peaxi162Scf00684g00224 Petunia axillaris HOM05D003708 ORTHO05D004452 2.0e-43 179.1 99 80.8
THA.LOC104799162 Tarenaya hassleriana HOM05D003708 ORTHO05D004452 4.5e-43 177.9 99 80.8
unitig_8.g4754 Utricularia gibba HOM05D003708 ORTHO05D004452 5.8e-43 177.6 99 81.8
EL10Ac9g21697 Beta vulgaris HOM05D003708 ORTHO05D004452 7.6e-43 177.2 99 80.8
PGR042G2933 Punica granatum HOM05D003708 ORTHO05D004452 7.6e-43 177.2 99 81.8
Nn1g04897 Nelumbo nucifera HOM05D003708 ORTHO05D004452 9.9e-43 176.8 99 80.8
ECA236G4291 Erigeron canadensis HOM05D003708 ORTHO05D004452 1.7e-42 176.0 99 80.8
PSO384G0323 Papaver somniferum HOM05D003708 ORTHO05D004452 1.7e-42 176.0 99 79.8
Rhsim11G0179400 Rhododendron simsii HOM05D003708 ORTHO05D004452 1.7e-42 176.0 113 74.3
BcaC04g19189 Brassica carinata HOM05D003708 ORTHO05D004452 2.2e-42 175.6 99 80.8
C09p64980 Brassica napus HOM05D003708 ORTHO05D004452 2.2e-42 175.6 99 80.8
BolC9t59326H Brassica oleracea HOM05D003708 ORTHO05D004452 2.2e-42 175.6 99 80.8
BraA10t44652Z Brassica rapa HOM05D003708 ORTHO05D004452 2.2e-42 175.6 99 80.8
FAN15G1456 Fragaria x ananassa HOM05D003708 ORTHO05D004452 2.2e-42 175.6 99 80.8
FAN20G3010 Fragaria x ananassa HOM05D003708 ORTHO05D004452 2.2e-42 175.6 99 80.8
FAN24G3295 Fragaria x ananassa HOM05D003708 ORTHO05D004452 2.2e-42 175.6 99 80.8
BcaB01g05446 Brassica carinata HOM05D003708 ORTHO05D004452 2.9e-42 175.3 99 79.8
BcaB01g05447 Brassica carinata HOM05D003708 ORTHO05D004452 2.9e-42 175.3 99 79.8
A03p05250 Brassica napus HOM05D003708 ORTHO05D004452 2.9e-42 175.3 99 79.8
BolC3t13114H Brassica oleracea HOM05D003708 ORTHO05D004452 2.9e-42 175.3 99 79.8
BraA03t09864Z Brassica rapa HOM05D003708 ORTHO05D004452 2.9e-42 175.3 99 79.8
A10p25890 Brassica napus HOM05D003708 ORTHO05D004452 3.8e-42 174.9 99 80.8
CDE05G0123 Ceratophyllum demersum HOM05D003708 ORTHO05D004452 3.8e-42 174.9 99 78.8
Thhalv10013369m.g Eutrema salsugineum HOM05D003708 ORTHO05D004452 3.8e-42 174.9 99 80.8
FAN27G1867 Fragaria x ananassa HOM05D003708 ORTHO05D004452 3.8e-42 174.9 99 80.8
Lsat_1_v5_gn_7_90480 Lactuca sativa HOM05D003708 ORTHO05D004452 3.8e-42 174.9 99 80.8
RcHm_v2.0_Chr6g0265651 Rosa chinensis HOM05D003708 ORTHO05D004452 3.8e-42 174.9 99 79.8
PSO339G0466 Papaver somniferum HOM05D003708 ORTHO05D004452 6.4e-42 174.1 99 78.8
FvH4_2g09380 Fragaria vesca HOM05D003708 ORTHO05D004452 8.4e-42 173.7 97 81.4
C03p06040 Brassica napus HOM05D003708 ORTHO05D004452 1.1e-41 173.3 99 78.8
CARHR201280 Cardamine hirsuta HOM05D003708 ORTHO05D004452 1.1e-41 173.3 99 77.8
Sp6g31720 Schrenkiella parvula HOM05D003708 ORTHO05D004452 1.1e-41 173.3 99 79.8
Zm00001eb406820 Zea mays HOM05D003708 ORTHO05D004452 1.1e-41 173.3 99 75.8
AL3G26740 Arabidopsis lyrata HOM05D003708 ORTHO05D004452 1.4e-41 172.9 99 78.8
AL6G22640 Arabidopsis lyrata HOM05D003708 ORTHO05D004452 1.4e-41 172.9 99 78.8
AT3G14390 Arabidopsis thaliana HOM05D003708 ORTHO05D004452 1.4e-41 172.9 99 78.8
AT5G11880 Arabidopsis thaliana HOM05D003708 ORTHO05D004452 1.4e-41 172.9 99 78.8
Carub.0001s3063 Capsella rubella HOM05D003708 ORTHO05D004452 1.4e-41 172.9 99 78.8
HanXRQChr04g0127831 Helianthus annuus HOM05D003708 ORTHO05D004452 1.4e-41 172.9 99 79.8
Aa31LG3G15320 Aethionema arabicum HOM05D003708 ORTHO05D004452 1.9e-41 172.6 99 78.8
Carub.0006s1041 Capsella rubella HOM05D003708 ORTHO05D004452 3.2e-41 171.8 99 78.8
ECA246G0885 Erigeron canadensis HOM05D003708 ORTHO05D004452 4.2e-41 171.4 99 79.8
Zm00001eb164230 Zea mays HOM05D003708 ORTHO05D004452 1.6e-40 169.5 99 74.7
Os02g0440000 Oryza sativa ssp. japonica HOM05D003708 ORTHO05D004452 2.3e-39 165.6 99 73.7
HPP92_001592 Vanilla planifolia HOM05D003708 ORTHO05D004452 3.0e-39 165.2 99 73.7
AagrBONN_evm.TU.Sc2ySwM_228.2627 Anthoceros agrestis HOM05D003708 ORTHO05D004452 3.9e-39 164.9 99 73.7
SMO301G0021 Selaginella moellendorffii HOM05D003708 ORTHO05D004452 8.7e-39 163.7 115 66.1
Pp3c24_7340 Physcomitrium patens HOM05D003708 ORTHO05D004452 1.3e-37 159.8 99 68.7
Pp3c24_7341 Physcomitrium patens HOM05D003708 ORTHO05D004452 1.3e-37 159.8 99 68.7
CSS0015853 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 2.4e-36 155.6 149 55.0
Ah.01g006350 Amaranthus hybridus HOM05D003708 ORTHO05D004452 6.9e-36 154.1 82 85.4
Mapoly0005s0182 Marchantia polymorpha HOM05D003708 ORTHO05D004452 6.9e-36 154.1 99 69.7
CBR_g46280 Chara braunii HOM05D003708 ORTHO05D004452 1.2e-35 153.3 97 71.1
Pp3c23_16600 Physcomitrium patens HOM05D003708 ORTHO05D004452 1.2e-35 153.3 99 66.7
TAR628G0623 Trochodendron aralioides HOM05D003708 ORTHO05D004452 2.0e-35 152.5 99 70.7
TAR628G0633 Trochodendron aralioides HOM05D003708 ORTHO05D004452 4.2e-33 144.8 87 74.7
arahy.Tifrunner.gnm1.ann1.EPLA3D Arachis hypogaea HOM05D003708 ORTHO05D004452 1.2e-32 143.3 80 81.2
Cre01.g050100 Chlamydomonas reinhardtii HOM05D003708 ORTHO05D004452 3.5e-32 141.7 99 64.6
Lj6C687T4 Lonicera japonica HOM05D003708 ORTHO05D004452 3.5e-32 141.7 98 67.3
Nitab4.5_0008925g0010 Nicotiana tabacum HOM05D003708 ORTHO05D004452 3.0e-31 138.7 95 70.5
CDE11G0056 Ceratophyllum demersum HOM05D003708 ORTHO05D004452 1.5e-30 136.3 99 65.7
Gohir.A12G043000 Gossypium hirsutum HOM05D003708 ORTHO05D004452 3.3e-22 108.6 57 86.0
TAR381G0003 Trochodendron aralioides HOM05D003708 ORTHO05D004452 1.4e-20 103.2 57 78.9
TAR636G0705 Trochodendron aralioides HOM05D003708 ORTHO05D004452 3.1e-20 102.1 56 80.4
Hund00244 Selenicereus undatus HOM05D003708 ORTHO05D004452 5.3e-20 101.3 70 70.0
TAR628G0529 Trochodendron aralioides HOM05D003708 ORTHO05D004452 1.2e-19 100.1 78 62.8
TAR628G1665 Trochodendron aralioides HOM05D003708 ORTHO05D004452 3.4e-19 98.6 61 73.8
SEGI_14006 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 7.7e-19 97.4 56 76.8
Duzib268G1397 Durio zibethinus HOM05D003708 ORTHO05D004452 3.2e-17 92.0 60 70.0
arahy.Tifrunner.gnm1.ann1.UUKH7B Arachis hypogaea HOM05D003708 ORTHO05D000639 6.1e-16 87.8 50 76.0
GSVIVG01029866001 Vitis vinifera HOM05D003708 ORTHO05D004452 7.9e-16 87.4 54 72.2
VMungo0720G2093 Vigna mungo HOM05D003708 ORTHO05D004452 1.4e-15 86.7 48 81.2
SEGI_39868 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 3.3e-14 82.0 48 77.1
SEGI_12812 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 9.7e-14 80.5 44 81.8
CSS0044853 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 2.8e-13 79.0 46 78.3
SEGI_30541 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 4.8e-13 78.2 46 69.6
vmacro02085 Vaccinium macrocarpon HOM05D001037 ORTHO05D000888 1.4e-12 76.6 54 70.4
SEGI_13472 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 2.4e-12 75.9 46 73.9
Lj3C650T5 Lonicera japonica HOM05D003708 ORTHO05D004452 5.0e-10 68.2 47 68.1
vmacro02086 Vaccinium macrocarpon HOM05D001037 ORTHO05D000888 8.5e-10 67.4 55 60.0
Actinidia27884 Actinidia chinensis HOM05D003708 ORTHO05D053587 1.2e-08 63.5 113 38.9
TAR383G0428 Trochodendron aralioides HOM05D003708 ORTHO05D004452 1.6e-08 63.2 31 87.1
Lj3C651T3 Lonicera japonica HOM05D003708 ORTHO05D004452 3.6e-08 62.0 46 65.2
Eucgr.D02438 Eucalyptus grandis HOM05D003708 ORTHO05D004452 2.3e-07 59.3 31 83.9


User provided reference genes

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