Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G037400 Glycine max HOM05D004365 ORTHO05D005123 1.2e-66 256.1 115 100.0
Lalb_Chr18g0058831 Lupinus albus HOM05D004365 ORTHO05D005123 6.8e-65 250.4 115 97.4
Phvul.009G256100 Phaseolus vulgaris HOM05D004365 ORTHO05D005123 1.2e-64 249.6 115 95.7
Glyma.15G142700 Glycine max HOM05D004365 ORTHO05D005123 2.6e-64 248.4 115 96.5
CANSAT54G2312 Cannabis sativa HOM05D004365 ORTHO05D005123 1.3e-63 246.1 115 93.9
Ca_01870_v3 Cicer arietinum L. HOM05D004365 ORTHO05D005123 1.3e-63 246.1 115 93.9
Lj6g0010863 Lotus japonicus HOM05D004365 ORTHO05D005123 1.3e-63 246.1 115 94.8
PGR004G2507 Punica granatum HOM05D004365 ORTHO05D005123 2.2e-63 245.4 115 93.9
QL06p011635 Quercus lobata HOM05D004365 ORTHO05D005123 2.2e-63 245.4 114 93.9
ClCG05G006460 Citrullus lanatus HOM05D004365 ORTHO05D005123 2.9e-63 245.0 115 93.0
Sed0001961 Sechium edule HOM05D004365 ORTHO05D005123 2.9e-63 245.0 115 93.0
Sed0006030 Sechium edule HOM05D004365 ORTHO05D005123 2.9e-63 245.0 115 93.0
Nn4g25611 Nelumbo nucifera HOM05D004365 ORTHO05D005123 3.7e-63 244.6 115 93.0
Medtr2g034520 Medicago truncatula HOM05D004365 ORTHO05D005123 4.9e-63 244.2 115 93.0
Haze_01277 Corylus avellana HOM05D004365 ORTHO05D005123 6.4e-63 243.8 115 93.0
ECA246G3323 Erigeron canadensis HOM05D004365 ORTHO05D005123 6.4e-63 243.8 115 93.0
CiPaw.01G139700 Carya illinoinensis HOM05D004365 ORTHO05D005123 8.4e-63 243.4 115 92.2
Psat6g078760 Pisum sativum HOM05D004365 ORTHO05D005123 1.1e-62 243.0 115 93.0
TPR.G5757 Trifolium pratense HOM05D004365 ORTHO05D005123 1.1e-62 243.0 115 92.2
GSVIVG01035016001 Vitis vinifera HOM05D004365 ORTHO05D005123 1.1e-62 243.0 115 93.0
HanXRQChr05g0145921 Helianthus annuus HOM05D004365 ORTHO05D005123 1.9e-62 242.3 115 92.2
Ah.13g072000 Amaranthus hybridus HOM05D004365 ORTHO05D005123 2.4e-62 241.9 115 91.3
Hma1.2p1_0013F.1_g008720 Hydrangea macrophylla HOM05D004365 ORTHO05D005123 3.2e-62 241.5 115 91.3
TAR365G0998 Trochodendron aralioides HOM05D004365 ORTHO05D005123 3.2e-62 241.5 115 90.4
Actinidia13364 Actinidia chinensis HOM05D004365 ORTHO05D005123 4.1e-62 241.1 115 92.2
Lsat_1_v5_gn_6_116841 Lactuca sativa HOM05D004365 ORTHO05D005123 4.1e-62 241.1 115 90.4
RcHm_v2.0_Chr4g0424591 Rosa chinensis HOM05D004365 ORTHO05D005123 4.1e-62 241.1 115 91.3
Aqoxy2G02775 Aquilegia oxysepala HOM05D004365 ORTHO05D005123 5.4e-62 240.7 115 91.3
CSS0008168 Camellia sinensis var. sinensis HOM05D004365 ORTHO05D005123 7.1e-62 240.4 115 91.3
Prupe.1G122000 Prunus persica HOM05D004365 ORTHO05D005123 7.1e-62 240.4 115 90.4
DCAR_023347 Daucus carota HOM05D004365 ORTHO05D005123 1.6e-61 239.2 115 92.2
Oeu016485.1 Olea europaea HOM05D004365 ORTHO05D005123 2.1e-61 238.8 115 90.4
Cc03_g00970 Coffea canephora HOM05D004365 ORTHO05D005123 2.7e-61 238.4 115 91.3
MSTRG.21775 Avicennia marina HOM05D004365 ORTHO05D005123 3.5e-61 238.0 115 91.3
Ciclev10006256m.g Citrus clementina HOM05D004365 ORTHO05D005123 3.5e-61 238.0 115 89.6
Eucgr.H02666 Eucalyptus grandis HOM05D004365 ORTHO05D005123 3.5e-61 238.0 115 91.3
TWI73G0828 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 3.5e-61 238.0 115 89.6
Nitab4.5_0000647g0090 Nicotiana tabacum HOM05D004365 ORTHO05D005123 7.8e-61 236.9 115 90.4
PSO761G0124 Papaver somniferum HOM05D004365 ORTHO05D005123 7.8e-61 236.9 115 88.7
Peaxi162Scf00164g01133 Petunia axillaris HOM05D004365 ORTHO05D005123 7.8e-61 236.9 115 90.4
Solyc05g053430.3 Solanum lycopersicum HOM05D004365 ORTHO05D005123 7.8e-61 236.9 115 90.4
Sopen05g031930 Solanum pennellii HOM05D004365 ORTHO05D005123 7.8e-61 236.9 115 90.4
PGSC0003DMG400027213 Solanum tuberosum HOM05D004365 ORTHO05D005123 7.8e-61 236.9 115 90.4
unitig_22.g6354 Utricularia gibba HOM05D004365 ORTHO05D005123 7.8e-61 236.9 115 91.3
CDE02G0371 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 1.3e-60 236.1 115 89.6
SMO174G0170 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 1.3e-60 236.1 114 89.5
Sc05g0009630 Simmondsia chinensis HOM05D004365 ORTHO05D005123 1.3e-60 236.1 115 88.7
CDE09G0896 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 1.7e-60 235.7 115 88.7
FvH4_4g19480 Fragaria vesca HOM05D004365 ORTHO05D005123 1.7e-60 235.7 115 88.7
FAN07G2773 Fragaria x ananassa HOM05D004365 ORTHO05D005123 1.7e-60 235.7 115 88.7
Thecc.04G297700 Theobroma cacao HOM05D004365 ORTHO05D005123 1.7e-60 235.7 115 88.7
PSO210G6722 Papaver somniferum HOM05D004365 ORTHO05D005123 3.0e-60 235.0 115 87.8
Gohir.A01G034300 Gossypium hirsutum HOM05D004365 ORTHO05D005123 3.9e-60 234.6 115 87.8
Gohir.D01G023535 Gossypium hirsutum HOM05D004365 ORTHO05D005123 3.9e-60 234.6 115 87.8
Gorai.002G030000 Gossypium raimondii HOM05D004365 ORTHO05D005123 3.9e-60 234.6 115 87.8
Duzib052G0793 Durio zibethinus HOM05D004365 ORTHO05D005123 6.6e-60 233.8 115 87.8
Manes.15G005400 Manihot esculenta HOM05D004365 ORTHO05D005123 8.6e-60 233.4 115 87.8
MD16G1157100 Malus domestica HOM05D004365 ORTHO05D005123 1.1e-59 233.0 115 87.0
SMO364G0316 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 1.5e-59 232.6 115 87.8
HPP92_002026 Vanilla planifolia HOM05D004365 ORTHO05D005123 1.9e-59 232.3 115 87.8
MD13G1156200 Malus domestica HOM05D004365 ORTHO05D005123 3.3e-59 231.5 115 86.1
AT3G16980 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 4.3e-59 231.1 115 86.1
Dinv44302 Davidia involucrata HOM05D004365 ORTHO05D005123 4.3e-59 231.1 115 87.8
AL3G29960 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 5.6e-59 230.7 115 85.2
Aa31LG8G4020 Aethionema arabicum HOM05D004365 ORTHO05D005123 7.3e-59 230.3 115 85.2
Mapoly0028s0097 Marchantia polymorpha HOM05D004365 ORTHO05D005123 7.3e-59 230.3 115 87.0
Carub.0003s1673 Capsella rubella HOM05D004365 ORTHO05D005123 9.6e-59 229.9 115 85.2
Duzib212G0477 Durio zibethinus HOM05D004365 ORTHO05D005123 9.6e-59 229.9 115 86.1
Thhalv10021989m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 9.6e-59 229.9 115 84.3
Potri.008G106900 Populus trichocarpa HOM05D004365 ORTHO05D005123 1.2e-58 229.6 115 86.1
SEGI_37796 Sequoiadendron giganteum HOM05D004365 ORTHO05D005123 1.2e-58 229.6 115 85.2
THA.LOC104820300 Tarenaya hassleriana HOM05D004365 ORTHO05D005123 1.2e-58 229.6 115 84.3
vmacro15189 Vaccinium macrocarpon HOM05D004365 ORTHO05D005123 1.6e-58 229.2 135 78.5
Cpa.g.sc9.86 Carica papaya HOM05D004365 ORTHO05D005123 2.1e-58 228.8 115 85.2
CARHR092230 Cardamine hirsuta HOM05D004365 ORTHO05D005123 2.8e-58 228.4 115 84.3
BcaC09g50324 Brassica carinata HOM05D004365 ORTHO05D005123 3.6e-58 228.0 115 83.5
BcaNung00211 Brassica carinata HOM05D004365 ORTHO05D005123 3.6e-58 228.0 115 83.5
A01p21300 Brassica napus HOM05D004365 ORTHO05D005123 3.6e-58 228.0 115 83.5
Pp3c18_17910 Physcomitrium patens HOM05D004365 ORTHO05D005123 3.6e-58 228.0 115 86.1
Sabra10G0110500 Salix brachista HOM05D004365 ORTHO05D005123 3.6e-58 228.0 115 86.1
Sabra08G0080800 Salix brachista HOM05D004365 ORTHO05D005123 4.7e-58 227.6 115 85.2
BcaB08g34342 Brassica carinata HOM05D004365 ORTHO05D005123 6.2e-58 227.3 115 83.5
BcaC07g37975 Brassica carinata HOM05D004365 ORTHO05D005123 6.2e-58 227.3 115 83.5
A08p12300 Brassica napus HOM05D004365 ORTHO05D005123 6.2e-58 227.3 115 83.5
BolC8t48354H Brassica oleracea HOM05D004365 ORTHO05D005123 6.2e-58 227.3 115 83.5
AL7G38770 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 1.8e-57 225.7 115 82.6
AT4G16265 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 1.8e-57 225.7 115 82.6
Carub.0007s2525 Capsella rubella HOM05D004365 ORTHO05D005123 1.8e-57 225.7 115 82.6
Nitab4.5_0006365g0010 Nicotiana tabacum HOM05D004365 ORTHO05D005123 2.4e-57 225.3 134 77.6
Thhalv10026603m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 6.8e-57 223.8 115 81.7
Zm00001eb088460 Zea mays HOM05D004365 ORTHO05D005123 6.8e-57 223.8 115 82.6
TWI09G0163 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 8.9e-57 223.4 115 85.2
arahy.Tifrunner.gnm1.ann1.79Y4XM Arachis hypogaea HOM05D004365 ORTHO05D005123 1.2e-56 223.0 112 88.4
arahy.Tifrunner.gnm1.ann1.C4ZZV2 Arachis hypogaea HOM05D004365 ORTHO05D005123 1.2e-56 223.0 112 88.4
CARHR222650 Cardamine hirsuta HOM05D004365 ORTHO05D005123 2.0e-56 222.2 115 81.7
Migut.N00047 Erythranthe guttata HOM05D004365 ORTHO05D005123 1.7e-55 219.2 105 91.4
Hund03115 Selenicereus undatus HOM05D004365 ORTHO05D005123 1.7e-55 219.2 105 91.4
EL10Ac3g05464 Beta vulgaris HOM05D004365 ORTHO05D005123 3.8e-55 218.0 115 82.6
Hund11961 Selenicereus undatus HOM05D004365 ORTHO05D005123 1.1e-54 216.5 105 89.5
arahy.Tifrunner.gnm1.ann1.MX4EIU Arachis hypogaea HOM05D004365 ORTHO05D005123 9.3e-54 213.4 114 80.7
Os03g0102200 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 9.3e-54 213.4 115 79.1
A09p28560 Brassica napus HOM05D004365 ORTHO05D005123 4.6e-53 211.1 112 77.7
BraA09t38417Z Brassica rapa HOM05D004365 ORTHO05D005123 4.6e-53 211.1 112 77.7
SalBow2G2782 Salvia bowleyana HOM05D004365 ORTHO05D005123 7.8e-53 210.3 128 75.8
Lalb_Chr08g0234431 Lupinus albus HOM05D004365 ORTHO05D005123 2.3e-52 208.8 112 81.2
Os12g0560400 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 2.3e-52 208.8 105 86.7
BolC1t02605H Brassica oleracea HOM05D004365 ORTHO05D005123 6.6e-52 207.2 105 82.9
BraA08t33228Z Brassica rapa HOM05D004365 ORTHO05D005123 1.1e-51 206.5 105 82.9
SpUn0413_0020 Schrenkiella parvula HOM05D004365 ORTHO05D005123 3.3e-51 204.9 105 81.9
BcaC04g21057 Brassica carinata HOM05D004365 ORTHO05D005123 4.3e-51 204.5 112 75.0
Manes.03G202800 Manihot esculenta HOM05D004365 ORTHO05D005123 4.3e-51 204.5 115 78.3
C09p36150 Brassica napus HOM05D004365 ORTHO05D005123 5.6e-51 204.1 112 75.0
BolC9t56454H Brassica oleracea HOM05D004365 ORTHO05D005123 5.6e-51 204.1 112 75.0
Glyma.07G241200 Glycine max HOM05D004365 ORTHO05D005123 1.6e-50 202.6 115 73.9
Lj4g0028172 Lotus japonicus HOM05D004365 ORTHO05D005123 1.6e-50 202.6 115 77.4
TWI53G1753 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 1.8e-49 199.1 114 72.8
Phvul.003G112600 Phaseolus vulgaris HOM05D004365 ORTHO05D005123 5.3e-49 197.6 115 73.9
Dinv15193 Davidia involucrata HOM05D004365 ORTHO05D005123 9.0e-49 196.8 98 89.8
TWI53G0542 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 1.3e-47 193.0 114 71.1
HPP92_005120 Vanilla planifolia HOM05D004365 ORTHO05D005123 1.7e-47 192.6 114 68.4
Sp7g14780 Schrenkiella parvula HOM05D004365 ORTHO05D005123 1.4e-46 189.5 130 65.4
VMungo1309G0143 Vigna mungo HOM05D004365 ORTHO05D005123 2.4e-46 188.7 88 95.5
VMungo1215G2752 Vigna mungo HOM05D004365 ORTHO05D005123 9.3e-46 186.8 115 70.4
Mapoly0087s0071 Marchantia polymorpha HOM05D004365 ORTHO05D005123 3.0e-44 181.8 115 67.0
DCAR_027008 Daucus carota HOM05D004365 ORTHO05D005123 1.5e-43 179.5 180 51.7
ATR0665G356 Amborella trichopoda HOM05D004365 ORTHO05D005123 9.6e-43 176.8 88 88.6
AUR62041403 Chenopodium quinoa HOM05D004365 ORTHO05D005123 3.6e-42 174.9 93 84.9
Sabra10G0110300 Salix brachista HOM05D004365 ORTHO05D005123 3.6e-42 174.9 115 71.3
arahy.Tifrunner.gnm1.ann1.2XVX11 Arachis hypogaea HOM05D004365 ORTHO05D005123 1.8e-41 172.6 114 69.3
TPR.G10905 Trifolium pratense HOM05D004365 ORTHO05D005123 5.3e-41 171.0 88 84.1
AUR62016130 Chenopodium quinoa HOM05D004365 ORTHO05D005123 9.0e-41 170.2 80 93.8
Rhsim02G0004900 Rhododendron simsii HOM05D004365 ORTHO05D005123 9.0e-41 170.2 86 89.5
SGA_v2.0_scaffold119G32662 Striga asiatica HOM05D004365 ORTHO05D005123 1.5e-40 169.5 84 91.7
Os07g0615800 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 2.6e-40 168.7 115 57.4
FAN12G3053 Fragaria x ananassa HOM05D004365 ORTHO05D005123 3.4e-40 168.3 80 92.5
FvH4_3g15650 Fragaria vesca HOM05D004365 ORTHO05D005123 2.2e-39 165.6 80 90.0
FAN12G1077 Fragaria x ananassa HOM05D004365 ORTHO05D005123 8.4e-39 163.7 82 87.8
Atru.chr4.3028 Acer truncatum HOM05D004365 ORTHO05D005123 5.5e-38 161.0 79 87.3
BraA01t02037Z Brassica rapa HOM05D004365 ORTHO05D005123 9.3e-38 160.2 81 84.0
Potri.010G142500 Populus trichocarpa HOM05D004365 ORTHO05D005123 3.5e-37 158.3 94 75.5
BcaB04g18375 Brassica carinata HOM05D004365 ORTHO05D005123 1.0e-36 156.8 80 82.5
Eucgr.H02672 Eucalyptus grandis HOM05D004365 ORTHO05D005123 1.0e-36 156.8 84 84.5
Zm00001eb086380 Zea mays HOM05D004365 ORTHO05D005123 5.1e-36 154.5 80 82.5
Zm00001eb138580 Zea mays HOM05D004365 ORTHO05D005123 1.1e-35 153.3 81 80.2
Zm00001eb230190 Zea mays HOM05D004365 ORTHO05D005123 5.6e-35 151.0 81 81.5
COL.COLO4_34649 Corchorus olitorius HOM05D001765 ORTHO05D005123 1.6e-34 149.4 77 85.7
Haze_26633 Corylus avellana HOM05D004365 ORTHO05D005123 1.0e-31 140.2 110 54.5
MCO01G087 Micromonas commoda HOM05D004365 ORTHO05D005123 5.5e-30 134.4 111 52.3
Zm00001eb270680 Zea mays HOM05D004365 ORTHO05D005123 1.8e-25 119.4 64 82.8
AL7G38230 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 5.0e-23 111.3 61 73.8
Zm00001eb327460 Zea mays HOM05D004365 ORTHO05D005123 1.9e-22 109.4 97 48.5
Hma1.2p1_0096F.1_g047650 Hydrangea macrophylla HOM05D004365 ORTHO05D005123 2.5e-22 109.0 56 87.5
Cre12.g505750 Chlamydomonas reinhardtii HOM05D004365 ORTHO05D005123 9.3e-22 107.1 113 45.1
SHI00177 Sapria himalayana HOM05D004365 ORTHO05D005123 1.6e-21 106.3 71 64.8
AagrBONN_evm.TU.Sc2ySwM_117.3306 Anthoceros agrestis HOM05D004365 ORTHO05D005123 2.1e-21 105.9 114 44.7
PRCOL_00000204 Prasinoderma coloniale HOM05D004365 ORTHO05D005123 3.9e-20 101.7 113 46.0
Zm00001eb137030 Zea mays HOM05D004365 ORTHO05D005123 8.7e-20 100.5 54 85.2
BcaB01g01499 Brassica carinata HOM05D004365 ORTHO05D005123 4.8e-18 94.7 49 75.5
Cfa024902 Carpinus fangiana HOM05D004365 ORTHO05D005123 3.1e-17 92.0 74 52.7
Hma1.2p1_0234F.1_g098400 Hydrangea macrophylla HOM05D001088 ORTHO05D005123 9.0e-17 90.5 54 77.8
Mapoly0020s0069 Marchantia polymorpha HOM05D004365 ORTHO05D005123 3.8e-15 85.1 117 35.9
SMO304G0059 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 1.0e-12 77.0 105 37.1
AagrBONN_evm.TU.Sc2ySwM_344.170 Anthoceros agrestis HOM05D001942 ORTHO05D001996 1.1e-11 73.6 105 36.2
Os11g0676650 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 3.7e-10 68.6 40 75.0
Pp3c15_5550 Physcomitrium patens HOM05D006029 ORTHO05D007439 6.9e-09 64.3 112 32.1
PGR102G2016 Punica granatum HOM05D006029 ORTHO05D007439 6.9e-09 64.3 116 31.0
EL10Ac5g10924 Beta vulgaris HOM05D006029 ORTHO05D007439 1.2e-08 63.5 113 27.4
AagrBONN_evm.TU.Sc2ySwM_117.3630 Anthoceros agrestis HOM05D006029 ORTHO05D007439 2.0e-08 62.8 112 33.9
Sc02g0002910 Simmondsia chinensis HOM05D006029 ORTHO05D007439 5.9e-08 61.2 113 29.2
Mapoly0122s0031 Marchantia polymorpha HOM05D004365 ORTHO05D253640 1.3e-07 60.1 88 35.2
TAR374G1259 Trochodendron aralioides HOM05D006029 ORTHO05D007439 1.7e-07 59.7 112 28.6
Nn1g00349 Nelumbo nucifera HOM05D006029 ORTHO05D007439 2.2e-07 59.3 113 31.0
Hund17067 Selenicereus undatus HOM05D006029 ORTHO05D007439 2.2e-07 59.3 117 28.2
Ciclev10022957m.g Citrus clementina HOM05D006029 ORTHO05D007439 8.5e-07 57.4 117 31.6
arahy.Tifrunner.gnm1.ann1.A8XVJK Arachis hypogaea HOM05D006029 ORTHO05D007439 3.2e-06 55.5 121 25.6
Migut.B01899 Erythranthe guttata HOM05D006029 ORTHO05D007439 4.2e-06 55.1 112 25.9
Lalb_Chr04g0261421 Lupinus albus HOM05D006029 ORTHO05D007439 4.2e-06 55.1 116 29.3
vmacro12594 Vaccinium macrocarpon HOM05D006029 ORTHO05D007439 4.2e-06 55.1 114 28.9
arahy.Tifrunner.gnm1.ann1.ZU3BRN Arachis hypogaea HOM05D006029 ORTHO05D007439 5.5e-06 54.7 119 26.1
GSVIVG01027190001 Vitis vinifera HOM05D006029 ORTHO05D007439 5.5e-06 54.7 122 27.9
Psat3g005240 Pisum sativum HOM05D006029 ORTHO05D007439 7.2e-06 54.3 120 29.2


User provided reference genes

Program Settings