Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G210500 Glycine max HOM05D004152 ORTHO05D004878 3.9e-134 481.5 246 100.0
Glyma.07G032200 Glycine max HOM05D004152 ORTHO05D004878 2.8e-124 448.7 249 92.8
VMungo0331G1163 Vigna mungo HOM05D004152 ORTHO05D004878 1.2e-111 406.8 250 84.8
Phvul.010G153800 Phaseolus vulgaris HOM05D004152 ORTHO05D004878 4.6e-111 404.8 251 84.5
Lj3g0007947 Lotus japonicus HOM05D004152 ORTHO05D004878 8.5e-97 357.5 255 74.9
Psat7g255640 Pisum sativum HOM05D004152 ORTHO05D004878 1.9e-96 356.3 251 76.1
arahy.Tifrunner.gnm1.ann1.HAI1EF Arachis hypogaea HOM05D004152 ORTHO05D004878 5.1e-94 348.2 258 74.0
Medtr4g011180 Medicago truncatula HOM05D004152 ORTHO05D004878 5.1e-94 348.2 249 73.9
MD04G1062100 Malus domestica HOM05D004152 ORTHO05D004878 1.1e-93 347.1 247 72.1
Gorai.012G137200 Gossypium raimondii HOM05D004152 ORTHO05D004878 2.6e-93 345.9 232 78.0
Gohir.A04G110300 Gossypium hirsutum HOM05D004152 ORTHO05D004878 5.7e-93 344.7 249 73.9
Gohir.D04G150500 Gossypium hirsutum HOM05D004152 ORTHO05D004878 9.7e-93 344.0 232 77.6
Gohir.D04G150600 Gossypium hirsutum HOM05D004152 ORTHO05D004878 9.7e-93 344.0 232 77.6
MD06G1055800 Malus domestica HOM05D004152 ORTHO05D004878 1.7e-92 343.2 248 70.6
Haze_18794 Corylus avellana HOM05D004152 ORTHO05D004878 2.8e-92 342.4 249 73.5
Lalb_Chr25g0279491 Lupinus albus HOM05D004152 ORTHO05D004878 2.8e-92 342.4 221 78.3
COL.COLO4_08312 Corchorus olitorius HOM05D004152 ORTHO05D004878 1.1e-91 340.5 239 75.7
CANSAT21G2552 Cannabis sativa HOM05D004152 ORTHO05D004878 4.1e-91 338.6 255 70.2
Ca_20428_v3 Cicer arietinum L. HOM05D004152 ORTHO05D004878 4.1e-91 338.6 254 71.3
ClCG01G004210 Citrullus lanatus HOM05D004152 ORTHO05D004878 5.3e-91 338.2 252 72.6
CiPaw.16G091100 Carya illinoinensis HOM05D004152 ORTHO05D004878 9.1e-91 337.4 246 72.8
Duzib052G0353 Durio zibethinus HOM05D004152 ORTHO05D004878 1.2e-90 337.0 252 71.4
SGA_v2.0_scaffold104G30172 Striga asiatica HOM05D004152 ORTHO05D004878 2.0e-90 336.3 235 76.6
Lj2C222T2 Lonicera japonica HOM05D004152 ORTHO05D004878 2.6e-90 335.9 234 72.2
SalBow6G1227 Salvia bowleyana HOM05D004152 ORTHO05D004878 4.5e-90 335.1 185 88.1
Thecc.02G150400 Theobroma cacao HOM05D004152 ORTHO05D004878 4.5e-90 335.1 241 73.0
MSTRG.12117 Avicennia marina HOM05D004152 ORTHO05D004878 7.7e-90 334.3 199 84.4
Gorai.005G214700 Gossypium raimondii HOM05D004152 ORTHO05D004878 7.7e-90 334.3 247 72.1
arahy.Tifrunner.gnm1.ann1.Y2K32V Arachis hypogaea HOM05D004152 ORTHO05D004878 1.0e-89 334.0 259 70.3
FAN18G1702 Fragaria x ananassa HOM05D004152 ORTHO05D004878 1.0e-89 334.0 246 71.5
Cfa019694 Carpinus fangiana HOM05D004152 ORTHO05D004878 1.3e-89 333.6 251 70.1
FAN08G2273 Fragaria x ananassa HOM05D004152 ORTHO05D004878 1.3e-89 333.6 243 73.3
Aqoxy7G00694 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 2.9e-89 332.4 210 76.7
Sabra03G0074600 Salix brachista HOM05D004152 ORTHO05D004878 2.9e-89 332.4 223 76.2
Ciclev10021871m.g Citrus clementina HOM05D004152 ORTHO05D004878 3.8e-89 332.0 236 72.0
QL12p011587 Quercus lobata HOM05D004152 ORTHO05D004878 5.0e-89 331.6 259 69.1
PGR031G2826 Punica granatum HOM05D004152 ORTHO05D004878 6.5e-89 331.3 223 74.9
unitig_899.g15440 Utricularia gibba HOM05D004152 ORTHO05D004878 6.5e-89 331.3 194 84.0
Potri.003G107800 Populus trichocarpa HOM05D004152 ORTHO05D004878 1.1e-88 330.5 256 70.7
Cpa.g.sc29.188 Carica papaya HOM05D004152 ORTHO05D004878 1.9e-88 329.7 242 71.1
Manes.01G082700 Manihot esculenta HOM05D004152 ORTHO05D004878 1.9e-88 329.7 209 79.4
FAN13G0727 Fragaria x ananassa HOM05D004152 ORTHO05D004878 3.2e-88 328.9 249 70.3
Nitab4.5_0000618g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 3.2e-88 328.9 232 74.1
MELO3C005518.2 Cucumis melo HOM05D004152 ORTHO05D004878 4.2e-88 328.6 225 75.6
FAN04G2897 Fragaria x ananassa HOM05D004152 ORTHO05D004878 4.2e-88 328.6 228 74.6
Aqoxy7G00850 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 5.5e-88 328.2 257 67.3
Nitab4.5_0002881g0050 Nicotiana tabacum HOM05D004152 ORTHO05D004878 5.5e-88 328.2 235 74.0
TWI81G0703 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 5.5e-88 328.2 257 70.0
Atru.chr9.1286 Acer truncatum HOM05D004152 ORTHO05D004878 7.2e-88 327.8 252 69.8
Solyc06g060790.1 Solanum lycopersicum HOM05D004152 ORTHO05D004878 7.2e-88 327.8 223 73.5
CsaV3_5G004400 Cucumis sativus L. HOM05D004152 ORTHO05D004878 1.6e-87 326.6 186 86.0
FvH4_5g19250 Fragaria vesca HOM05D004152 ORTHO05D004878 1.6e-87 326.6 190 84.2
Sed0004379 Sechium edule HOM05D004152 ORTHO05D004878 1.6e-87 326.6 253 69.6
Migut.A01125 Erythranthe guttata HOM05D004152 ORTHO05D004878 3.6e-87 325.5 181 87.8
Prupe.5G066300 Prunus persica HOM05D004152 ORTHO05D004878 3.6e-87 325.5 228 73.2
Sopen06g020930 Solanum pennellii HOM05D004152 ORTHO05D004878 3.6e-87 325.5 222 73.0
Oeu040710.1 Olea europaea HOM05D004152 ORTHO05D004878 4.7e-87 325.1 260 68.1
Gohir.D02G191900 Gossypium hirsutum HOM05D004152 ORTHO05D004878 6.1e-87 324.7 247 70.9
TAR629G1833 Trochodendron aralioides HOM05D004152 ORTHO05D004878 1.0e-86 323.9 220 73.6
TWI60G0584 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 1.4e-86 323.6 245 70.6
PGSC0003DMG400024154 Solanum tuberosum HOM05D004152 ORTHO05D004878 2.3e-86 322.8 249 67.9
CSS0047405 Camellia sinensis var. sinensis HOM05D004152 ORTHO05D004878 5.2e-86 321.6 181 84.5
A03p23950 Brassica napus HOM05D004152 ORTHO05D004878 1.1e-85 320.5 216 74.5
THA.LOC104824129 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 1.1e-85 320.5 247 69.6
BraA03t11610Z Brassica rapa HOM05D004152 ORTHO05D004878 2.6e-85 319.3 216 74.5
DCAR_002274 Daucus carota HOM05D004152 ORTHO05D004878 3.3e-85 318.9 251 66.5
Sc10g0005540 Simmondsia chinensis HOM05D004152 ORTHO05D004878 3.3e-85 318.9 246 69.1
AUR62007107 Chenopodium quinoa HOM05D004152 ORTHO05D004878 4.4e-85 318.5 239 69.0
C03p28570 Brassica napus HOM05D004152 ORTHO05D004878 5.7e-85 318.2 191 80.6
Carub.0004s2557 Capsella rubella HOM05D004152 ORTHO05D004878 9.7e-85 317.4 190 81.1
BolC3t15222H Brassica oleracea HOM05D004152 ORTHO05D004878 1.7e-84 316.6 191 80.1
HanXRQChr13g0417841 Helianthus annuus HOM05D004152 ORTHO05D004878 8.2e-84 314.3 242 69.8
Nn6g33894 Nelumbo nucifera HOM05D004152 ORTHO05D004878 1.1e-83 313.9 258 65.1
CARHR138160 Cardamine hirsuta HOM05D004152 ORTHO05D004878 1.4e-83 313.5 248 67.3
DCAR_008502 Daucus carota HOM05D004152 ORTHO05D004878 1.4e-83 313.5 214 73.4
AT2G43090 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 2.4e-83 312.8 247 68.0
Sp4g25220 Schrenkiella parvula HOM05D004152 ORTHO05D004878 3.1e-83 312.4 190 78.9
AL4G41740 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 4.1e-83 312.0 247 68.0
BolC4t22054H Brassica oleracea HOM05D004152 ORTHO05D004878 4.1e-83 312.0 249 67.5
HanXRQChr03g0088791 Helianthus annuus HOM05D004152 ORTHO05D004878 4.1e-83 312.0 241 67.2
BraA05t19344Z Brassica rapa HOM05D004152 ORTHO05D004878 7.0e-83 311.2 242 67.8
CAN.G62.23 Capsicum annuum HOM05D004152 ORTHO05D004878 7.0e-83 311.2 182 83.0
PSO210G0624 Papaver somniferum HOM05D004152 ORTHO05D004878 7.0e-83 311.2 216 73.6
ECA240G2077 Erigeron canadensis HOM05D004152 ORTHO05D004878 9.1e-83 310.8 215 73.5
Thhalv10017142m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 1.6e-82 310.1 247 66.8
Rhsim07G0110300 Rhododendron simsii HOM05D004152 ORTHO05D004878 1.6e-82 310.1 237 70.0
BcaC02g12415 Brassica carinata HOM05D004152 ORTHO05D004878 2.0e-82 309.7 249 67.1
AUR62019969 Chenopodium quinoa HOM05D004152 ORTHO05D004878 2.0e-82 309.7 231 68.4
EL10Ac5g12362 Beta vulgaris HOM05D004152 ORTHO05D004878 3.5e-82 308.9 237 66.2
BcaNung03538 Brassica carinata HOM05D004152 ORTHO05D004878 4.5e-82 308.5 249 65.9
THA.LOC104803472 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 5.9e-82 308.1 232 69.0
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 5.0e-81 305.1 224 70.5
Ah.12g054170 Amaranthus hybridus HOM05D004152 ORTHO05D004878 1.5e-80 303.5 233 67.0
PSO210G4930 Papaver somniferum HOM05D004152 ORTHO05D004878 5.5e-80 301.6 252 64.3
CARHR169410 Cardamine hirsuta HOM05D004152 ORTHO05D004878 2.7e-79 299.3 250 64.8
Actinidia10839 Actinidia chinensis HOM05D004152 ORTHO05D004878 8.0e-79 297.7 206 76.7
Peaxi162Scf01022g00023 Petunia axillaris HOM05D004152 ORTHO05D004878 5.2e-78 295.0 241 66.8
BcaB01g01073 Brassica carinata HOM05D004152 ORTHO05D004878 1.2e-77 293.9 192 75.0
CDE11G0751 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 2.6e-77 292.7 198 74.2
Aa31LG10G13480 Aethionema arabicum HOM05D004152 ORTHO05D004878 9.8e-77 290.8 192 74.0
CARHR169370 Cardamine hirsuta HOM05D004152 ORTHO05D004878 1.3e-76 290.4 230 65.7
Hund14573 Selenicereus undatus HOM05D004152 ORTHO05D004878 4.8e-76 288.5 197 71.6
Aa31LG1G24900 Aethionema arabicum HOM05D004152 ORTHO05D004878 6.3e-76 288.1 195 74.9
SEGI_19785 Sequoiadendron giganteum HOM05D004152 ORTHO05D004878 1.4e-75 287.0 210 70.5
Lj8A264G55 Lonicera japonica HOM05D004152 ORTHO05D004878 4.1e-75 285.4 170 82.4
Zm00001eb249330 Zea mays HOM05D004152 ORTHO05D004878 1.6e-74 283.5 183 76.5
AL5G40810 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 3.5e-74 282.3 237 62.9
Carub.0005s2573 Capsella rubella HOM05D004152 ORTHO05D004878 3.5e-74 282.3 181 74.0
Os02g0655300 Oryza sativa ssp. japonica HOM05D004152 ORTHO05D004878 3.5e-74 282.3 212 67.9
Lsat_1_v5_gn_6_92521 Lactuca sativa HOM05D004152 ORTHO05D004878 4.5e-74 282.0 205 70.2
Carub.0002s0595 Capsella rubella HOM05D004152 ORTHO05D004878 5.9e-74 281.6 193 71.0
Mapoly0001s0104 Marchantia polymorpha HOM05D004152 ORTHO05D004878 5.9e-74 281.6 190 73.2
AT3G58990 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 2.9e-73 279.3 234 64.1
ATR0693G400 Amborella trichopoda HOM05D004152 ORTHO05D004878 1.5e-72 276.9 246 63.0
Pp3c1_29090 Physcomitrium patens HOM05D004152 ORTHO05D004878 1.5e-72 276.9 176 74.4
SMO274G0039 Selaginella moellendorffii HOM05D004152 ORTHO05D004878 1.9e-72 276.6 185 72.4
AagrBONN_evm.TU.Sc2ySwM_228.3330 Anthoceros agrestis HOM05D004152 ORTHO05D004878 2.5e-72 276.2 206 67.5
Pp3c14_19120 Physcomitrium patens HOM05D004152 ORTHO05D004878 3.2e-72 275.8 176 73.9
CARHR138170 Cardamine hirsuta HOM05D004152 ORTHO05D004878 1.2e-71 273.9 255 60.4
Sp4g25230 Schrenkiella parvula HOM05D004152 ORTHO05D004878 2.1e-71 273.1 199 69.3
BraA05t19345Z Brassica rapa HOM05D004152 ORTHO05D004878 2.7e-71 272.7 255 60.0
A05p03590 Brassica napus HOM05D004152 ORTHO05D004878 8.0e-71 271.2 255 59.6
BcaC02g12414 Brassica carinata HOM05D004152 ORTHO05D004878 1.0e-70 270.8 229 62.9
C04p04150 Brassica napus HOM05D004152 ORTHO05D004878 2.3e-70 269.6 219 64.4
BolC4t22055H Brassica oleracea HOM05D004152 ORTHO05D004878 2.3e-70 269.6 219 64.4
BcaNung03539 Brassica carinata HOM05D004152 ORTHO05D004878 6.8e-70 268.1 240 58.8
AL4G41750 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 2.6e-69 266.2 252 59.1
Thhalv10017125m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 2.6e-69 266.2 215 64.2
AT2G43100 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 9.8e-69 264.2 231 61.5
BcaC01g05264 Brassica carinata HOM05D004152 ORTHO05D004878 2.8e-68 262.7 189 72.0
Carub.0004s2558 Capsella rubella HOM05D004152 ORTHO05D004878 6.3e-68 261.5 253 57.7
Aa31LG1G24910 Aethionema arabicum HOM05D004152 ORTHO05D004878 1.4e-67 260.4 252 57.5
Cre06.g252650 Chlamydomonas reinhardtii HOM05D004152 ORTHO05D004878 1.0e-65 254.2 204 63.2
CDE11G0227 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 5.0e-65 251.9 150 81.3
Dinv39162 Davidia involucrata HOM05D004152 ORTHO05D004878 4.7e-63 245.4 155 77.4
Gohir.A03G168700 Gossypium hirsutum HOM05D004152 ORTHO05D004878 4.7e-63 245.4 247 57.9
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.4e-62 243.8 212 62.3
SHI09309 Sapria himalayana HOM05D004152 ORTHO05D004878 1.9e-56 223.4 133 80.5
Cc08_g12220 Coffea canephora HOM05D004152 ORTHO05D004878 1.4e-54 217.2 203 58.1
SalBow1G7183 Salvia bowleyana HOM05D004152 ORTHO05D004878 4.0e-54 215.7 206 62.1
HPP92_020921 Vanilla planifolia HOM05D004152 ORTHO05D004878 2.6e-53 213.0 187 59.9
Dinv21650 Davidia involucrata HOM05D004152 ORTHO05D004878 2.9e-52 209.5 121 83.5
Actinidia31515 Actinidia chinensis HOM05D004152 ORTHO05D004878 1.9e-51 206.8 166 70.5
Nitab4.5_0002372g0010 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.3e-49 200.7 119 83.2
Lj8A267T12 Lonicera japonica HOM05D004152 ORTHO05D004878 2.3e-49 199.9 245 52.2
Oeu047732.1 Olea europaea HOM05D004152 ORTHO05D004878 1.6e-47 193.7 217 53.9
Carub.0005s2576 Capsella rubella HOM05D004152 ORTHO05D004878 3.6e-47 192.6 163 62.6
EL10Ac5g12363 Beta vulgaris HOM05D004152 ORTHO05D004878 1.8e-46 190.3 196 51.0
TPR.G10893 Trifolium pratense HOM05D004152 ORTHO05D004878 1.8e-46 190.3 127 78.0
Lj8A266T18 Lonicera japonica HOM05D004152 ORTHO05D004878 5.2e-46 188.7 245 51.4
Sed0021243 Sechium edule HOM05D004152 ORTHO05D004878 7.5e-45 184.9 152 68.4
Rhsim05G0121600 Rhododendron simsii HOM05D004152 ORTHO05D004878 2.7e-42 176.4 158 63.3
Ah.12g054180 Amaranthus hybridus HOM05D004152 ORTHO05D004878 1.7e-41 173.7 221 43.0
BcaB05g25308 Brassica carinata HOM05D004152 ORTHO05D004878 1.1e-32 144.4 95 75.8
Lsat_1_v5_gn_7_1160 Lactuca sativa HOM05D004152 ORTHO05D004878 2.4e-30 136.7 76 82.9
SalBow1G0783 Salvia bowleyana HOM05D001430 ORTHO05D004878 4.4e-29 132.5 103 65.0
C04p04140 Brassica napus HOM05D000373 ORTHO05D007048 8.4e-28 128.3 76 80.3
A05p03570 Brassica napus HOM05D000373 ORTHO05D007048 1.1e-27 127.9 76 78.9
Lsat_1_v5_gn_5_55401 Lactuca sativa HOM05D004152 ORTHO05D004878 3.0e-25 119.8 88 68.2
ATR0693G063 Amborella trichopoda HOM05D004152 ORTHO05D004878 5.3e-22 109.0 125 51.2
AUR62007106 Chenopodium quinoa HOM05D004152 ORTHO05D004878 1.2e-21 107.8 112 52.7
Rhsim03G0103100 Rhododendron simsii HOM05D004152 ORTHO05D004878 8.4e-20 101.7 89 62.9
COL.COLO4_34273 Corchorus olitorius HOM05D004152 ORTHO05D004878 1.5e-13 80.9 161 37.3
Ah.14g083550 Amaranthus hybridus HOM05D004152 ORTHO05D004878 1.3e-12 77.8 50 78.0
GSVIVG01007403001 Vitis vinifera HOM05D004152 ORTHO05D004878 2.9e-12 76.6 198 33.8
Cfa024802 Carpinus fangiana HOM05D003112 ORTHO05D003660 3.9e-09 66.2 214 33.2
MCO01G562 Micromonas commoda HOM05D003112 ORTHO05D003660 1.5e-08 64.3 109 36.7
PRCOL_00005264 Prasinoderma coloniale HOM05D003112 ORTHO05D003660 1.5e-08 64.3 153 30.1
C03p28580 Brassica napus HOM05D004152 ORTHO05D004878 2.5e-08 63.5 63 44.4
BcaB01g00650 Brassica carinata HOM05D004152 ORTHO05D004878 4.3e-08 62.8 54 55.6
CsaV3_5G004360 Cucumis sativus L. HOM05D004152 ORTHO05D004878 4.3e-08 62.8 55 58.2
A03p23960 Brassica napus HOM05D004152 ORTHO05D004878 2.4e-06 57.0 49 63.3
Ca_28701_v3 Cicer arietinum L. HOM05D004152 ORTHO05D003660 9.0e-06 55.1 100 39.0


User provided reference genes

Program Settings