Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G045900 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 2914.4 1487 100.0
Glyma.05G238800 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 2839.3 1487 97.5
VMungo0251G0466 Vigna mungo HOM05D001486 ORTHO05D004921 0.0e+00 2790.0 1487 95.1
Phvul.002G321200 Phaseolus vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 2775.0 1487 94.8
Lj4g0010019 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 2692.5 1487 92.2
TPR.G19252 Trifolium pratense HOM05D001486 ORTHO05D004921 0.0e+00 2671.7 1487 91.2
Ca_17277_v3 Cicer arietinum L. HOM05D001486 ORTHO05D004921 0.0e+00 2667.1 1488 91.5
arahy.Tifrunner.gnm1.ann1.WZE3XK Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 2662.5 1487 90.7
arahy.Tifrunner.gnm1.ann1.FK3VI9 Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 2653.6 1480 90.5
Medtr8g105290 Medicago truncatula HOM05D001486 ORTHO05D004921 0.0e+00 2644.4 1487 90.2
Psat7g007960 Pisum sativum HOM05D001486 ORTHO05D004921 0.0e+00 2627.0 1489 89.7
Lalb_Chr05g0222211 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 2607.8 1479 89.2
Lalb_Chr09g0330891 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 2592.8 1487 88.4
QL03p035815 Quercus lobata HOM05D001486 ORTHO05D004921 0.0e+00 2476.8 1492 84.1
Thecc.02G292500 Theobroma cacao HOM05D001486 ORTHO05D004921 0.0e+00 2420.2 1499 81.4
Prupe.1G333300 Prunus persica HOM05D001486 ORTHO05D004921 0.0e+00 2412.5 1493 81.6
Gohir.D02G139700 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 2399.8 1499 80.5
Gorai.005G157100 Gossypium raimondii HOM05D001486 ORTHO05D004921 0.0e+00 2399.0 1498 80.5
Atru.chr11.925 Acer truncatum HOM05D001486 ORTHO05D004921 0.0e+00 2390.1 1499 80.9
COL.COLO4_16588 Corchorus olitorius HOM05D001486 ORTHO05D004921 0.0e+00 2385.9 1498 80.7
TWI74G0959 Tripterygium wilfordii HOM05D001486 ORTHO05D004921 0.0e+00 2384.4 1501 80.4
Duzib268G0355 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 2379.7 1499 80.3
Manes.17G083900 Manihot esculenta HOM05D001486 ORTHO05D004921 0.0e+00 2370.1 1500 79.9
Ciclev10014036m.g Citrus clementina HOM05D001486 ORTHO05D004921 0.0e+00 2361.3 1499 79.5
Lj3A864G85 Lonicera japonica HOM05D001486 ORTHO05D004921 0.0e+00 2344.3 1502 79.6
Duzib251G0538 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 2343.9 1499 79.1
CSS0037038 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 0.0e+00 2342.8 1495 79.7
RcHm_v2.0_Chr4g0443061 Rosa chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2337.0 1492 78.8
CANSAT01G0610 Cannabis sativa HOM05D001486 ORTHO05D004921 0.0e+00 2335.5 1490 79.1
FvH4_4g33560 Fragaria vesca HOM05D001486 ORTHO05D004921 0.0e+00 2333.9 1493 78.3
FAN22G2372 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2333.1 1493 78.3
Potri.008G134800 Populus trichocarpa HOM05D001486 ORTHO05D004921 0.0e+00 2333.1 1499 78.2
FAN12G0503 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2328.5 1493 78.2
Actinidia36627 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2327.7 1499 79.0
MD13G1020400 Malus domestica HOM05D001486 ORTHO05D004921 0.0e+00 2318.5 1491 79.2
FAN17G1739 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2316.2 1493 77.7
FAN07G1595 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2314.3 1486 78.1
Actinidia12394 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2297.3 1482 79.0
Eucgr.G02106 Eucalyptus grandis HOM05D001486 ORTHO05D004921 0.0e+00 2295.4 1499 77.6
PGR142G2431 Punica granatum HOM05D001486 ORTHO05D004921 0.0e+00 2290.0 1499 77.6
Sabra08G0102800 Salix brachista HOM05D001486 ORTHO05D004921 0.0e+00 2270.0 1533 75.5
vmacro10693 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 0.0e+00 2264.6 1556 75.3
MSTRG.2128 Avicennia marina HOM05D001486 ORTHO05D004921 0.0e+00 2242.2 1499 74.7
Nn4g24372 Nelumbo nucifera HOM05D001486 ORTHO05D004921 0.0e+00 2238.8 1449 78.8
Sed0010499 Sechium edule HOM05D001486 ORTHO05D004921 0.0e+00 2236.5 1493 75.6
Migut.E00481 Erythranthe guttata HOM05D001486 ORTHO05D004921 0.0e+00 2229.5 1496 75.0
SalBow2G2685 Salvia bowleyana HOM05D001486 ORTHO05D004921 0.0e+00 2224.1 1534 73.9
SGA_v2.0_scaffold23G10214 Striga asiatica HOM05D001486 ORTHO05D004921 0.0e+00 2213.0 1496 74.8
Aqoxy3G03310 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 2211.0 1483 75.7
Cpa.g.sc2.194 Carica papaya HOM05D001486 ORTHO05D004921 0.0e+00 2207.6 1498 75.9
MELO3C026441.2 Cucumis melo HOM05D001486 ORTHO05D004921 0.0e+00 2200.6 1492 74.3
Rhsim09G0089500 Rhododendron simsii HOM05D001486 ORTHO05D004921 0.0e+00 2200.2 1571 72.9
THA.LOC104823681 Tarenaya hassleriana HOM05D001486 ORTHO05D004921 0.0e+00 2200.2 1486 74.8
EL10Ac3g06288 Beta vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 2199.1 1497 74.5
ClCG07G005610 Citrullus lanatus HOM05D001486 ORTHO05D004921 0.0e+00 2198.7 1482 74.8
Cc04_g10510 Coffea canephora HOM05D001486 ORTHO05D004921 0.0e+00 2194.5 1499 75.2
DCAR_007329 Daucus carota HOM05D001486 ORTHO05D004921 0.0e+00 2194.5 1495 74.0
Aqoxy7G03241 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 2190.6 1483 75.2
CsaV3_5G015740 Cucumis sativus L. HOM05D001486 ORTHO05D004921 0.0e+00 2190.2 1493 74.0
CAN.G149.16 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 2189.1 1498 74.2
Sopen07g004030 Solanum pennellii HOM05D001486 ORTHO05D004921 0.0e+00 2179.4 1497 74.2
Solyc07g008160.3 Solanum lycopersicum HOM05D001486 ORTHO05D004921 0.0e+00 2179.1 1497 74.2
Ah.13g072990 Amaranthus hybridus HOM05D001486 ORTHO05D004921 0.0e+00 2160.2 1497 73.5
Thhalv10006562m.g Eutrema salsugineum HOM05D001486 ORTHO05D004921 0.0e+00 2150.9 1486 74.2
AT1G14850 Arabidopsis thaliana HOM05D001486 ORTHO05D004921 0.0e+00 2144.0 1490 73.6
AL1G26870 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 0.0e+00 2143.6 1491 73.9
CARHR015390 Cardamine hirsuta HOM05D001486 ORTHO05D004921 0.0e+00 2142.9 1490 73.3
Carub.0001s1464 Capsella rubella HOM05D001486 ORTHO05D004921 0.0e+00 2139.4 1488 73.2
Hund13366 Selenicereus undatus HOM05D001486 ORTHO05D004921 0.0e+00 2137.8 1553 71.1
ECA233G0786 Erigeron canadensis HOM05D001486 ORTHO05D004921 0.0e+00 2127.4 1485 73.0
HanXRQChr08g0212501 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 2126.7 1493 72.6
Oeu064208.1 Olea europaea HOM05D001486 ORTHO05D004921 0.0e+00 2126.7 1499 72.4
BcaB02g06554 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2124.7 1486 73.1
Sp1g13290 Schrenkiella parvula HOM05D001486 ORTHO05D004921 0.0e+00 2123.6 1486 72.9
BcaC05g25406 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2115.5 1489 73.1
C05p12830 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2113.6 1496 72.9
AUR62002589 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 2108.2 1482 72.1
BolC5t30028H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 2107.4 1499 72.6
BcaC07g41534 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2100.9 1486 72.3
BolC8t52091H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 2096.2 1494 72.1
BcaB08g34420 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2094.3 1483 72.2
C08p45360 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2091.2 1497 72.1
BraA06t24267Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 2090.8 1496 72.1
BraA09t41545Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 2088.9 1498 72.1
A09p61750 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2088.5 1494 72.2
CiPaw.06G051900 Carya illinoinensis HOM05D001486 ORTHO05D004921 0.0e+00 2083.9 1303 82.0
Sc11g0004180 Simmondsia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2082.0 1499 71.3
Haze_10881 Corylus avellana HOM05D001486 ORTHO05D004921 0.0e+00 2071.2 1589 70.0
Lsat_1_v5_gn_8_46521 Lactuca sativa HOM05D001486 ORTHO05D004921 0.0e+00 2065.8 1474 72.0
AUR62030013 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 2054.6 1576 68.0
Dinv10475 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 2053.5 1307 80.5
Aa31LG1G260 Aethionema arabicum HOM05D001486 ORTHO05D004921 0.0e+00 2049.6 1459 71.9
PSO782G0822 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 2041.5 1493 69.9
PSO063G3102 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 2035.4 1495 69.6
Gohir.A03G115400 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 2030.8 1310 79.1
Dinv07730 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 2023.8 1277 80.1
ATR0753G157 Amborella trichopoda HOM05D001486 ORTHO05D004921 0.0e+00 1974.1 1499 68.6
HPP92_002282 Vanilla planifolia HOM05D001486 ORTHO05D004921 0.0e+00 1899.0 1481 66.4
Hma1.2p1_0705F.1_g206910 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1887.1 1223 78.7
Hma1.2p1_0277F.1_g111740 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1880.5 1394 72.0
Os06g0305200 Oryza sativa ssp. japonica HOM05D001486 ORTHO05D004921 0.0e+00 1875.9 1487 64.6
CAN.G601.2 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 1860.9 1304 73.5
A06p10890 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 1854.7 1366 70.6
HanXRQChr12g0363231 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 1791.9 1425 66.5
Peaxi162Scf00376g00816 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1787.7 1445 65.5
Zm00001eb009110 Zea mays HOM05D001486 ORTHO05D004921 0.0e+00 1776.1 1437 63.0
Lj1g0014898 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 1721.4 1082 83.3
TAR629G0611 Trochodendron aralioides HOM05D001486 ORTHO05D004921 0.0e+00 1652.1 988 83.2
Mapoly0035s0137 Marchantia polymorpha HOM05D001486 ORTHO05D004921 0.0e+00 1632.8 1522 57.2
Pp3c8_3720 Physcomitrium patens HOM05D001486 ORTHO05D004921 0.0e+00 1626.3 1524 56.5
Peaxi162Scf01391g00116 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1476.5 1418 58.0
Zm00001eb399840 Zea mays HOM05D001486 ORTHO05D004921 0.0e+00 1410.6 1217 60.3
AagrBONN_evm.TU.Sc2ySwM_362.1455 Anthoceros agrestis HOM05D001486 ORTHO05D004921 0.0e+00 1370.9 1294 56.0
Nitab4.5_0004576g0040 Nicotiana tabacum HOM05D001486 ORTHO05D004921 0.0e+00 1359.7 1393 55.5
Nitab4.5_0010421g0010 Nicotiana tabacum HOM05D001486 ORTHO05D004921 0.0e+00 1308.9 1377 54.3
MD16G1018500 Malus domestica HOM05D001486 ORTHO05D004921 0.0e+00 1138.6 745 76.8
GSVIVG01011662001 Vitis vinifera HOM05D001486 ORTHO05D004921 0.0e+00 1109.4 740 78.9
Peaxi162Scf01152g00010 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1108.2 1283 51.7
SEGI_07920 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 1.3e-309 1067.0 848 64.4
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 1.2e-262 911.0 778 62.5
Peaxi162Scf01152g00113 Petunia axillaris HOM05D001486 ORTHO05D004921 2.0e-249 867.1 924 54.9
unitig_27.g25159 Utricularia gibba HOM05D001486 ORTHO05D004921 3.9e-245 852.8 712 63.5
CDE06G1861 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 7.9e-238 828.6 579 69.8
unitig_27.g25160 Utricularia gibba HOM05D001486 ORTHO05D004921 2.5e-215 753.8 609 64.0
Carub.0127s0003 Capsella rubella HOM05D001486 ORTHO05D004921 3.8e-200 703.4 893 47.1
CDE06G1153 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 4.8e-195 686.4 599 61.9
GSVIVG01011661001 Vitis vinifera HOM05D001486 ORTHO05D004921 2.6e-188 664.1 361 86.1
ECA247G0951 Erigeron canadensis HOM05D001486 ORTHO05D004921 1.3e-176 625.2 742 48.4
MD16G1018600 Malus domestica HOM05D001486 ORTHO05D004921 2.5e-167 594.3 478 67.8
TAR629G0795 Trochodendron aralioides HOM05D001486 ORTHO05D004921 5.2e-165 586.6 441 73.0
AL1G32070 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 8.6e-160 569.3 469 63.5
RcHm_v2.0_Chr2g0167011 Rosa chinensis HOM05D001486 ORTHO05D004921 4.6e-145 520.4 569 53.4
CDE07G1854 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 1.4e-122 445.7 771 39.0
MCO15G435 Micromonas commoda HOM05D001486 ORTHO05D004921 1.1e-101 376.3 1793 25.7
PRCOL_00002396 Prasinoderma coloniale HOM05D001486 ORTHO05D004921 5.1e-96 357.5 1570 27.0
CDE07G0203 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 7.4e-95 353.6 445 45.4
Cre09.g394350 Chlamydomonas reinhardtii HOM05D001486 ORTHO05D004921 7.4e-95 353.6 1607 25.5
MD16G1018800 Malus domestica HOM05D001486 ORTHO05D004921 5.1e-88 330.9 219 78.5
SEGI_12334 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 1.4e-85 322.8 396 48.5
SEGI_06977 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 3.1e-77 295.0 225 67.6
vmacro04889 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 6.5e-75 287.3 239 64.4
FvH4_1g18130 Fragaria vesca HOM05D001486 ORTHO05D004921 8.0e-73 280.4 155 80.6
AL1G32080 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 1.2e-71 276.6 231 64.1
CAN.G601.1 Capsicum annuum HOM05D001486 ORTHO05D004921 3.3e-71 275.0 152 83.6
Zm00001eb255180 Zea mays HOM05D001486 ORTHO05D004921 2.7e-65 255.4 196 66.3
vmacro09906 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 6.1e-65 254.2 276 53.3
SGA_v2.0_scaffold23G10209 Striga asiatica HOM05D001486 ORTHO05D004921 1.2e-47 196.8 102 90.2
Cfa024881 Carpinus fangiana HOM05D005623 ORTHO05D007130 2.2e-46 192.6 1334 23.7
Pp3c3_36410 Physcomitrium patens HOM05D001486 ORTHO05D004921 2.7e-44 185.7 188 53.7
CSS0012816 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 2.0e-39 169.5 187 55.1
CARHR227050 Cardamine hirsuta HOM05D001486 ORTHO05D004921 2.4e-37 162.5 163 51.5
RcHm_v2.0_Chr2g0167021 Rosa chinensis HOM05D001486 ORTHO05D004921 1.6e-36 159.8 217 48.8
Zm00001eb235300 Zea mays HOM05D001486 ORTHO05D004921 3.3e-34 152.1 130 57.7
AL2G18360 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 9.5e-34 150.6 344 33.7
Zm00001eb201400 Zea mays HOM05D001486 ORTHO05D004921 8.3e-30 137.5 114 64.0
BcaC09g49263 Brassica carinata HOM05D001486 ORTHO05D012131 2.7e-28 132.5 109 63.3
BcaC01g04114 Brassica carinata HOM05D001486 ORTHO05D012131 3.0e-27 129.0 96 67.7
ClCG01G015310 Citrullus lanatus HOM05D001486 ORTHO05D004921 3.6e-25 122.1 56 94.6
Rhsim12G0118300 Rhododendron simsii HOM05D001486 ORTHO05D004921 1.8e-24 119.8 102 65.7
SEGI_12550 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 1.2e-23 117.1 65 80.0
ClCG09G011850 Citrullus lanatus HOM05D004959 ORTHO05D005961 4.4e-23 115.2 67 80.6
AL3G34910 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 6.6e-19 101.3 134 47.8
GSVIVG01026805001 Vitis vinifera HOM05D001486 ORTHO05D004921 4.0e-16 92.0 73 60.3
GSVIVG01001572001 Vitis vinifera HOM05D001486 ORTHO05D004921 9.0e-16 90.9 110 50.9
Hma1.2p1_0277F.1_g111730 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 1.2e-15 90.5 53 83.0
Hma1.2p1_0705F.1_g206905 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 1.2e-15 90.5 53 83.0
Zm00001eb334690 Zea mays HOM05D001486 ORTHO05D037216 9.6e-10 70.9 54 66.7
FvH4_4g10520 Fragaria vesca HOM05D002057 ORTHO05D004921 3.6e-09 68.9 34 88.2
SMO306G0002 Selaginella moellendorffii HOM05D065592 ORTHO05D004921 5.8e-07 61.6 149 28.9
CSS0014875 Camellia sinensis var. sinensis HOM05D014252 ORTHO05D004921 7.6e-07 61.2 40 77.5
SEGI_21189 Sequoiadendron giganteum HOM05D001486 ORTHO05D037216 1.7e-06 60.1 53 60.4
SMO270G0006 Selaginella moellendorffii HOM05D065592 ORTHO05D004921 2.2e-06 59.7 149 28.9


User provided reference genes

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