Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G161066 Glycine max HOM05D000228 ORTHO05D004880 2.3e-66 255.4 124 100.0
Glyma.15G235900 Glycine max HOM05D000228 ORTHO05D004880 8.2e-40 167.2 109 78.0
Glyma.13G196900 Glycine max HOM05D000228 ORTHO05D004880 5.9e-38 161.0 108 73.1
Phvul.011G206900 Phaseolus vulgaris HOM05D000228 ORTHO05D004880 5.9e-38 161.0 109 72.5
VMungo1127G1028 Vigna mungo HOM05D000228 ORTHO05D004880 5.9e-38 161.0 108 74.1
Lalb_Chr01g0007761 Lupinus albus HOM05D000228 ORTHO05D004880 1.0e-37 160.2 108 70.4
Lj3g0014961 Lotus japonicus HOM05D000228 ORTHO05D004880 3.2e-36 155.2 108 69.4
Lj3g0006268 Lotus japonicus HOM05D000228 ORTHO05D004880 4.2e-36 154.8 108 69.4
Lalb_Chr03g0032731 Lupinus albus HOM05D000228 ORTHO05D004880 9.4e-36 153.7 108 69.4
arahy.Tifrunner.gnm1.ann1.K566NY Arachis hypogaea HOM05D000228 ORTHO05D004880 1.8e-34 149.4 108 66.7
TWI15G0020 Tripterygium wilfordii HOM05D000228 ORTHO05D004880 1.8e-34 149.4 95 72.6
Ca_23956_v3 Cicer arietinum L. HOM05D000228 ORTHO05D004880 5.1e-34 147.9 109 67.0
Ca_30886_v3 Cicer arietinum L. HOM05D000228 ORTHO05D004880 5.1e-34 147.9 109 67.0
TPR.G25062 Trifolium pratense HOM05D000228 ORTHO05D004880 1.5e-33 146.4 109 66.1
CiPaw.13G013500 Carya illinoinensis HOM05D000228 ORTHO05D004880 9.7e-33 143.7 109 64.2
TPR.G27818 Trifolium pratense HOM05D000228 ORTHO05D004880 9.7e-33 143.7 89 74.2
Potri.003G196900 Populus trichocarpa HOM05D000228 ORTHO05D004880 2.8e-32 142.1 90 71.1
Medtr8g038990 Medicago truncatula HOM05D000228 ORTHO05D004880 3.7e-32 141.7 89 73.0
Eucgr.J01182 Eucalyptus grandis HOM05D000228 ORTHO05D004880 4.8e-32 141.4 91 69.2
MD02G1287600 Malus domestica HOM05D000228 ORTHO05D004880 6.3e-32 141.0 92 70.7
MD07G1039700 Malus domestica HOM05D000228 ORTHO05D004880 6.3e-32 141.0 92 70.7
TWI38G1715 Tripterygium wilfordii HOM05D000228 ORTHO05D004880 6.3e-32 141.0 95 70.5
GSVIVG01013491001 Vitis vinifera HOM05D000228 ORTHO05D004880 1.1e-31 140.2 90 71.1
Ciclev10004129m.g Citrus clementina HOM05D000228 ORTHO05D004880 1.4e-31 139.8 90 72.2
Prupe.2G035500 Prunus persica HOM05D000228 ORTHO05D004880 5.3e-31 137.9 92 69.6
RcHm_v2.0_Chr1g0324091 Rosa chinensis HOM05D000228 ORTHO05D004880 1.6e-30 136.3 90 68.9
Atru.chr12.1341 Acer truncatum HOM05D000228 ORTHO05D004880 2.6e-30 135.6 90 68.9
HanXRQChr15g0481481 Helianthus annuus HOM05D000228 ORTHO05D004880 3.5e-30 135.2 92 68.5
ECA236G0597 Erigeron canadensis HOM05D000228 ORTHO05D004880 5.9e-30 134.4 109 59.6
CSS0032728 Camellia sinensis var. sinensis HOM05D000228 ORTHO05D004880 1.3e-29 133.3 103 64.1
MBI13_g09079_MAGBIO Magnolia biondii HOM05D000228 ORTHO05D012380 1.7e-29 132.9 106 63.2
Sabra03G0146600 Salix brachista HOM05D000228 ORTHO05D004880 1.7e-29 132.9 82 73.2
Ah.10g030570 Amaranthus hybridus HOM05D000228 ORTHO05D004880 3.8e-29 131.7 89 67.4
Haze_03043 Corylus avellana HOM05D000228 ORTHO05D004880 6.5e-29 131.0 91 67.0
Aa31LG5G19570 Aethionema arabicum HOM05D000228 ORTHO05D004880 1.1e-28 130.2 88 65.9
Thhalv10016128m.g Eutrema salsugineum HOM05D000228 ORTHO05D004880 1.1e-28 130.2 88 65.9
HanXRQChr01g0022531 Helianthus annuus HOM05D000228 ORTHO05D004880 1.1e-28 130.2 116 56.0
Dinv22035 Davidia involucrata HOM05D000228 ORTHO05D004880 4.2e-28 128.3 102 62.7
SalBow5G3376 Salvia bowleyana HOM05D000228 ORTHO05D004880 7.2e-28 127.5 98 61.2
SalBow5G5050 Salvia bowleyana HOM05D000228 ORTHO05D004880 7.2e-28 127.5 98 61.2
TAR626G0107 Trochodendron aralioides HOM05D000228 ORTHO05D004880 7.2e-28 127.5 92 63.0
vmacro12694 Vaccinium macrocarpon HOM05D000228 ORTHO05D004880 7.2e-28 127.5 89 67.4
PSO063G0693 Papaver somniferum HOM05D000228 ORTHO05D004880 9.4e-28 127.1 92 60.9
PSO782G2240 Papaver somniferum HOM05D000228 ORTHO05D004880 9.4e-28 127.1 86 64.0
CsaV3_5G024490 Cucumis sativus L. HOM05D000228 ORTHO05D004880 1.2e-27 126.7 88 65.9
Nitab4.5_0000307g0250 Nicotiana tabacum HOM05D000228 ORTHO05D004880 1.2e-27 126.7 92 63.0
Nitab4.5_0004955g0050 Nicotiana tabacum HOM05D000228 ORTHO05D004880 1.2e-27 126.7 90 64.4
CAN.G1045.38 Capsicum annuum HOM05D000228 ORTHO05D004880 1.6e-27 126.3 93 62.4
FvH4_7g03040 Fragaria vesca HOM05D000228 ORTHO05D004880 1.6e-27 126.3 92 65.2
FAN01G1291 Fragaria x ananassa HOM05D000228 ORTHO05D004880 1.6e-27 126.3 92 65.2
FAN03G2523 Fragaria x ananassa HOM05D000228 ORTHO05D004880 1.6e-27 126.3 92 65.2
FAN06G4504 Fragaria x ananassa HOM05D000228 ORTHO05D004880 1.6e-27 126.3 92 65.2
FAN10G2682 Fragaria x ananassa HOM05D000228 ORTHO05D004880 1.6e-27 126.3 92 65.2
Solyc01g096390.4 Solanum lycopersicum HOM05D000228 ORTHO05D004880 2.1e-27 125.9 105 58.1
Sopen01g040120 Solanum pennellii HOM05D000228 ORTHO05D004880 2.1e-27 125.9 105 58.1
MELO3C005153.2 Cucumis melo HOM05D000228 ORTHO05D004880 2.7e-27 125.6 88 64.8
Sed0021971 Sechium edule HOM05D000228 ORTHO05D004880 2.7e-27 125.6 89 65.2
Migut.B01227 Erythranthe guttata HOM05D000228 ORTHO05D004880 3.6e-27 125.2 90 65.6
EL10Ac2g02803 Beta vulgaris HOM05D000228 ORTHO05D004880 4.7e-27 124.8 80 71.2
HPP92_010995 Vanilla planifolia HOM05D000228 ORTHO05D004880 4.7e-27 124.8 108 56.5
Aqoxy6G01013 Aquilegia oxysepala HOM05D000228 ORTHO05D004880 8.0e-27 124.0 88 64.8
Lsat_1_v5_gn_7_31901 Lactuca sativa HOM05D006097 ORTHO05D004880 8.0e-27 124.0 109 56.0
Zm00001eb207920 Zea mays HOM05D000228 ORTHO05D004880 8.0e-27 124.0 89 59.6
Nn6g31494 Nelumbo nucifera HOM05D000228 ORTHO05D004880 1.0e-26 123.6 79 68.4
Os02g0152800 Oryza sativa ssp. japonica HOM05D000228 ORTHO05D004880 1.4e-26 123.2 108 54.6
Sc11g0006440 Simmondsia chinensis HOM05D000228 ORTHO05D004880 1.8e-26 122.9 88 63.6
Carub.0004s2219 Capsella rubella HOM05D000228 ORTHO05D004880 6.7e-26 120.9 88 63.6
Cc02_g30260 Coffea canephora HOM05D000228 ORTHO05D004880 6.7e-26 120.9 107 57.0
Manes.04G159600 Manihot esculenta HOM05D000228 ORTHO05D004880 6.7e-26 120.9 89 62.9
Peaxi162Scf00767g00417 Petunia axillaris HOM05D000228 ORTHO05D004880 8.8e-26 120.6 94 58.5
Sed0005526 Sechium edule HOM05D000228 ORTHO05D004880 1.1e-25 120.2 94 60.6
Hund27778 Selenicereus undatus HOM05D000228 ORTHO05D004880 1.1e-25 120.2 83 66.3
Hund27781 Selenicereus undatus HOM05D000228 ORTHO05D004880 1.1e-25 120.2 83 66.3
ClCG01G007520 Citrullus lanatus HOM05D000228 ORTHO05D004880 1.5e-25 119.8 81 66.7
Aqoxy7G04198 Aquilegia oxysepala HOM05D000228 ORTHO05D004880 2.0e-25 119.4 88 60.2
CANSAT56G3974 Cannabis sativa HOM05D000228 ORTHO05D004880 2.0e-25 119.4 88 60.2
PGR044G0122 Punica granatum HOM05D000228 ORTHO05D004880 2.0e-25 119.4 89 61.8
SGA_v2.0_scaffold124G33613 Striga asiatica HOM05D000228 ORTHO05D004880 2.6e-25 119.0 89 65.2
Lj7A585G29 Lonicera japonica HOM05D000228 ORTHO05D004880 4.4e-25 118.2 102 58.8
AUR62032652 Chenopodium quinoa HOM05D000228 ORTHO05D004880 5.7e-25 117.9 109 55.0
Thecc.10G157200 Theobroma cacao HOM05D000228 ORTHO05D004880 5.7e-25 117.9 85 63.5
CARHR134990 Cardamine hirsuta HOM05D000228 ORTHO05D004880 1.3e-24 116.7 77 66.2
THA.LOC104809820 Tarenaya hassleriana HOM05D000228 ORTHO05D004880 2.2e-24 115.9 74 70.3
AL4G37670 Arabidopsis lyrata HOM05D000228 ORTHO05D004880 4.8e-24 114.8 75 68.0
Actinidia21520 Actinidia chinensis HOM05D000228 ORTHO05D004880 6.3e-24 114.4 70 74.3
AT2G40030 Arabidopsis thaliana HOM05D000228 ORTHO05D004880 8.2e-24 114.0 75 66.7
Sp4g22340 Schrenkiella parvula HOM05D000228 ORTHO05D004880 1.4e-23 113.2 72 70.8
BcaB01g03594 Brassica carinata HOM05D000228 ORTHO05D004880 7.0e-23 110.9 75 66.7
BcaC01g05444 Brassica carinata HOM05D000228 ORTHO05D001885 7.0e-23 110.9 75 66.7
BcaC01g05442 Brassica carinata HOM05D000228 ORTHO05D004880 1.6e-22 109.8 75 65.3
A03p22490 Brassica napus HOM05D000228 ORTHO05D004880 1.6e-22 109.8 75 65.3
C03p26640 Brassica napus HOM05D000228 ORTHO05D004880 1.6e-22 109.8 75 65.3
BolC3t15049H Brassica oleracea HOM05D000228 ORTHO05D004880 1.6e-22 109.8 75 65.3
BraA03t11476Z Brassica rapa HOM05D000228 ORTHO05D004880 1.6e-22 109.8 75 65.3
BcaB02g09059 Brassica carinata HOM05D000228 ORTHO05D004880 2.7e-22 109.0 74 64.9
DCAR_022342 Daucus carota HOM05D000228 ORTHO05D004880 2.7e-22 109.0 72 69.4
Duzib114G0608 Durio zibethinus HOM05D000228 ORTHO05D004880 1.3e-21 106.7 79 63.3
Gorai.010G216600 Gossypium raimondii HOM05D000228 ORTHO05D004880 1.7e-21 106.3 71 67.6
Gohir.A06G175400 Gossypium hirsutum HOM05D000228 ORTHO05D004880 5.0e-21 104.8 71 66.2
COL.COLO4_20753 Corchorus olitorius HOM05D000228 ORTHO05D004880 1.1e-20 103.6 86 58.1
Ah.10g030560 Amaranthus hybridus HOM05D000228 ORTHO05D004880 2.5e-20 102.4 79 64.6
Os01g0965000 Oryza sativa ssp. japonica HOM05D000228 ORTHO05D004880 4.8e-16 88.2 75 50.7
SEGI_15098 Sequoiadendron giganteum HOM05D000228 ORTHO05D013010 1.2e-14 83.6 93 45.2
Sabra01G0019800 Salix brachista HOM05D000228 ORTHO05D004880 1.1e-12 77.0 64 59.4
CDE02G1282 Ceratophyllum demersum HOM05D000228 ORTHO05D004880 1.2e-11 73.6 54 61.1
Mapoly0004s0120 Marchantia polymorpha HOM05D000228 ORTHO05D006129 1.8e-10 69.7 92 38.0
Pp3c15_4150 Physcomitrium patens HOM05D000228 ORTHO05D004880 1.5e-09 66.6 89 37.1
Mapoly0104s0044 Marchantia polymorpha HOM05D000228 ORTHO05D006129 5.7e-09 64.7 68 39.7
Zm00001eb119360 Zea mays HOM05D000228 ORTHO05D004880 7.5e-09 64.3 62 54.8
arahy.Tifrunner.gnm1.ann1.50BPU8 Arachis hypogaea HOM05D000228 ORTHO05D004880 1.3e-08 63.5 46 60.9
Ciclev10018489m.g Citrus clementina HOM05D000228 ORTHO05D006129 6.3e-08 61.2 91 35.2
Pp3c17_3180 Physcomitrium patens HOM05D000228 ORTHO05D006129 6.3e-08 61.2 92 35.9
AagrBONN_evm.TU.Sc2ySwM_344.2431 Anthoceros agrestis HOM05D000228 ORTHO05D006129 1.4e-07 60.1 108 35.2
Pp3c15_5270 Physcomitrium patens HOM05D000228 ORTHO05D006129 1.4e-07 60.1 92 37.0
Psat4g144400 Pisum sativum HOM05D000228 ORTHO05D004880 3.1e-07 58.9 40 60.0
Sabra01G0084800 Salix brachista HOM05D000228 ORTHO05D006129 4.1e-07 58.5 89 33.7
vmacro14006 Vaccinium macrocarpon HOM05D000228 ORTHO05D006129 5.4e-07 58.2 74 35.1
ATR0757G037 Amborella trichopoda HOM05D000228 ORTHO05D006129 7.0e-07 57.8 86 37.2
Rhsim07G0095300 Rhododendron simsii HOM05D000228 ORTHO05D006129 9.2e-07 57.4 74 35.1
Sc01g0008810 Simmondsia chinensis HOM05D001804 ORTHO05D006129 9.2e-07 57.4 71 38.0
HPP92_014991 Vanilla planifolia HOM05D000228 ORTHO05D013010 9.2e-07 57.4 77 32.5
TWI15G0190 Tripterygium wilfordii HOM05D000228 ORTHO05D006129 2.0e-06 56.2 89 34.8
Potri.001G111300 Populus trichocarpa HOM05D000228 ORTHO05D006129 3.5e-06 55.5 89 32.6
Sed0014462 Sechium edule HOM05D000228 ORTHO05D006129 3.5e-06 55.5 78 33.3
ClCG00G000380 Citrullus lanatus HOM05D000228 ORTHO05D006129 4.5e-06 55.1 86 33.7
ClCG10G003630 Citrullus lanatus HOM05D000228 ORTHO05D006129 4.5e-06 55.1 86 33.7
QL12p017019 Quercus lobata HOM05D000228 ORTHO05D006129 5.9e-06 54.7 78 30.8
Eucgr.D01929 Eucalyptus grandis HOM05D000228 ORTHO05D006129 7.7e-06 54.3 75 33.3
TWI60G0610 Tripterygium wilfordii HOM05D000228 ORTHO05D006129 7.7e-06 54.3 70 37.1


User provided reference genes

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