Gene: PGR044G0122
General Information
Structural Information
- Species Punica granatum
- Gene Identifier PGR044G0122
- Transcript Identifier PGR044G0122.01
- Gene Type Coding gene
- Location NC_045134.1 : 3899837-3909769 : negative
Gene Family Information
- ID HOM05D000228
- #Genes/#Species 1809/100
- Phylogenetic origin
- ID ORTHO05D004880
- #Genes/#Species 169/88
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- pid XP_031371467.1
- name LOC116187028
- name XM_031515607.1
- id gene-LOC116187028
- uniprot A0A6P8BNS5
Descriptions
- product DNA-directed RNA polymerase V subunit 1, transcript variant X2
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0050832 | ISO | PLAZA Integrative Orthology | defense response to fungus | AT2G40030 |
| GO:0030422 | ISO | PLAZA Integrative Orthology | production of siRNA involved in RNA interference | AT2G40030 |
| GO:0035194 | ISO | PLAZA Integrative Orthology | post-transcriptional gene silencing by RNA | AT2G40030 |
| GO:0006306 | ISO | PLAZA Integrative Orthology | DNA methylation | AT2G40030 |
| GO:0006351 | IEA | GOA Database | transcription, DNA-templated | |
| GO:0006351 | IEA | InterPro | transcription, DNA-templated |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT2G40030 |
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0016740 | IEA | GOA Database | transferase activity | |
| GO:0016779 | IEA | GOA Database | nucleotidyltransferase activity | |
| GO:0046872 | IEA | GOA Database | metal ion binding | |
| GO:0003899 | IEA | GOA Database | DNA-directed 5'-3' RNA polymerase activity | |
| GO:0003899 | IEA | InterPro | DNA-directed 5'-3' RNA polymerase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016604 | ISO | PLAZA Integrative Orthology | nuclear body | AT2G40030 |
| GO:0005730 | ISO | PLAZA Integrative Orthology | nucleolus | AT2G40030 |
| GO:0030880 | ISO | PLAZA Integrative Orthology | RNA polymerase complex | AT2G40030 |
| GO:0000418 | ISO | PLAZA Integrative Orthology | RNA polymerase IV complex | AT2G40030 |
| GO:0000419 | ISO | PLAZA Integrative Orthology | RNA polymerase V complex | AT2G40030 |
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT2G40030 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR007080 | RNA polymerase Rpb1, domain 1 |
| IPR007081 | RNA polymerase Rpb1, domain 5 |
| IPR044893 | RNA polymerase Rpb1, clamp domain superfamily |
| IPR000722 | RNA polymerase, alpha subunit |
| IPR042102 | RNA polymerase Rpb1, domain 3 superfamily |
| IPR006592 | RNA polymerase, N-terminal |
| IPR007066 | RNA polymerase Rpb1, domain 3 |
| Mapman id | Description |
|---|---|
| 15.1.5.1 | RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol V catalytic components.subunit 1 |