Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G042000 Glycine max HOM05D001849 ORTHO05D004689 0.0e+00 2168.3 1091 100.0
VMungo0331G1611 Vigna mungo HOM05D001849 ORTHO05D004689 0.0e+00 2034.2 1111 92.7
Phvul.010G127100 Phaseolus vulgaris HOM05D001849 ORTHO05D004689 0.0e+00 1968.7 1091 91.8
Lj3g0004011 Lotus japonicus HOM05D001849 ORTHO05D004689 0.0e+00 1894.8 1144 83.1
TPR.G29992 Trifolium pratense HOM05D001849 ORTHO05D004689 0.0e+00 1850.1 1106 83.7
Psat4g166880 Pisum sativum HOM05D001849 ORTHO05D004689 0.0e+00 1841.6 1120 82.6
Medtr8g022010 Medicago truncatula HOM05D001849 ORTHO05D004689 0.0e+00 1829.7 1094 83.5
arahy.Tifrunner.gnm1.ann1.1RN2YG Arachis hypogaea HOM05D001849 ORTHO05D004689 0.0e+00 1766.5 1053 83.3
arahy.Tifrunner.gnm1.ann1.RMM65D Arachis hypogaea HOM05D001849 ORTHO05D004689 0.0e+00 1761.1 1084 81.4
QL05p003662 Quercus lobata HOM05D001849 ORTHO05D004689 0.0e+00 1632.5 1113 74.4
CiPaw.01G216000 Carya illinoinensis HOM05D001849 ORTHO05D004689 0.0e+00 1622.8 1092 74.5
Cfa003503 Carpinus fangiana HOM05D001849 ORTHO05D004689 0.0e+00 1615.5 1102 74.0
Manes.11G016400 Manihot esculenta HOM05D001849 ORTHO05D004689 0.0e+00 1615.1 1096 73.6
Prupe.3G037400 Prunus persica HOM05D001849 ORTHO05D004689 0.0e+00 1578.1 1095 73.0
MD09G1178100 Malus domestica HOM05D001849 ORTHO05D004689 0.0e+00 1577.0 1092 72.8
TWI59G1440 Tripterygium wilfordii HOM05D001849 ORTHO05D004689 0.0e+00 1559.7 1096 70.7
Duzib192G0006 Durio zibethinus HOM05D001849 ORTHO05D004689 0.0e+00 1554.7 1096 71.4
Potri.001G165900 Populus trichocarpa HOM05D001849 ORTHO05D004689 0.0e+00 1552.7 1100 71.2
Sabra01G0127400 Salix brachista HOM05D001849 ORTHO05D004689 0.0e+00 1552.7 1106 70.9
Ciclev10027090m.g Citrus clementina HOM05D001849 ORTHO05D004689 0.0e+00 1549.3 1097 71.1
Duzib235G0671 Durio zibethinus HOM05D001849 ORTHO05D004689 0.0e+00 1548.5 1093 71.2
Gohir.A09G079900 Gossypium hirsutum HOM05D001849 ORTHO05D004689 0.0e+00 1544.3 1097 70.7
MD17G1148600 Malus domestica HOM05D001849 ORTHO05D004689 0.0e+00 1539.6 1098 71.0
CANSAT56G0878 Cannabis sativa HOM05D001849 ORTHO05D004689 0.0e+00 1537.3 1089 71.7
RcHm_v2.0_Chr2g0146431 Rosa chinensis HOM05D001849 ORTHO05D004689 0.0e+00 1533.5 1089 71.4
Gohir.D09G079550 Gossypium hirsutum HOM05D001849 ORTHO05D004689 0.0e+00 1526.1 1121 69.0
Lalb_Chr10g0101321 Lupinus albus HOM05D001849 ORTHO05D004689 0.0e+00 1525.4 878 87.1
MBI13_g01700_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 0.0e+00 1518.8 1097 69.4
COL.COLO4_30797 Corchorus olitorius HOM05D001849 ORTHO05D004689 0.0e+00 1516.1 1099 69.9
vmacro15054 Vaccinium macrocarpon HOM05D001849 ORTHO05D004689 0.0e+00 1514.2 1096 69.3
CSS0036951 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 0.0e+00 1510.4 1096 70.7
Gorai.006G094800 Gossypium raimondii HOM05D001849 ORTHO05D004689 0.0e+00 1506.1 1124 69.0
FvH4_6g35170 Fragaria vesca HOM05D001849 ORTHO05D004689 0.0e+00 1488.4 1087 69.7
FAN05G2930 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1488.0 1087 69.7
Thecc.06G124800 Theobroma cacao HOM05D001849 ORTHO05D004689 0.0e+00 1477.2 987 74.5
THA.LOC104822664 Tarenaya hassleriana HOM05D001849 ORTHO05D004689 0.0e+00 1474.9 1095 68.3
PGR119G1999 Punica granatum HOM05D001849 ORTHO05D004689 0.0e+00 1470.3 1102 67.9
FAN02G0489 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1469.5 1144 66.3
Sopen12g023890 Solanum pennellii HOM05D001849 ORTHO05D004689 0.0e+00 1463.4 1091 67.4
Thhalv10019957m.g Eutrema salsugineum HOM05D001849 ORTHO05D004689 0.0e+00 1461.4 1091 68.4
CSS0020628 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 0.0e+00 1460.7 1107 68.2
Haze_16076 Corylus avellana HOM05D001849 ORTHO05D004689 0.0e+00 1457.6 1194 65.1
Carub.0003s1373 Capsella rubella HOM05D001849 ORTHO05D004689 0.0e+00 1455.3 1091 67.8
C01p50480 Brassica napus HOM05D001849 ORTHO05D004689 0.0e+00 1451.0 1099 67.7
A05p35330 Brassica napus HOM05D001849 ORTHO05D004689 0.0e+00 1448.3 1095 68.3
C05p53520 Brassica napus HOM05D001849 ORTHO05D004689 0.0e+00 1448.0 1093 68.2
FAN14G1459 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1448.0 1091 67.9
Sed0016273 Sechium edule HOM05D001849 ORTHO05D004689 0.0e+00 1447.6 1095 67.2
AT3G14120 Arabidopsis thaliana HOM05D001849 ORTHO05D004689 0.0e+00 1447.2 1093 67.6
BolC5t34029H Brassica oleracea HOM05D001849 ORTHO05D004689 0.0e+00 1444.5 1094 67.9
ClCG09G001140 Citrullus lanatus HOM05D001849 ORTHO05D004689 0.0e+00 1440.6 1156 64.2
BolC1t05000H Brassica oleracea HOM05D001849 ORTHO05D004689 0.0e+00 1437.6 1103 67.2
Sp3g12380 Schrenkiella parvula HOM05D001849 ORTHO05D004689 0.0e+00 1433.7 1091 67.2
CsaV3_7G034250 Cucumis sativus L. HOM05D001849 ORTHO05D004689 0.0e+00 1432.2 1133 64.4
BcaC05g29121 Brassica carinata HOM05D001849 ORTHO05D004689 0.0e+00 1430.2 1092 67.5
BraA05t22343Z Brassica rapa HOM05D001849 ORTHO05D004689 0.0e+00 1423.7 1135 65.7
Aa31LG8G1350 Aethionema arabicum HOM05D001849 ORTHO05D004689 0.0e+00 1421.4 1096 66.9
SGA_v2.0_scaffold4G02078 Striga asiatica HOM05D001849 ORTHO05D004689 0.0e+00 1418.7 1088 65.4
AL3G26350 Arabidopsis lyrata HOM05D001849 ORTHO05D004689 0.0e+00 1417.1 1050 68.6
Lj9C535G6 Lonicera japonica HOM05D001849 ORTHO05D004689 0.0e+00 1414.4 1081 67.7
Solyc12g049410.3 Solanum lycopersicum HOM05D001849 ORTHO05D004689 0.0e+00 1409.4 1025 68.5
EL10Ac7g16444 Beta vulgaris HOM05D001849 ORTHO05D004689 0.0e+00 1406.3 1124 63.7
FAN09G4066 Fragaria x ananassa HOM05D001849 ORTHO05D004689 0.0e+00 1392.5 1090 66.1
DCAR_026423 Daucus carota HOM05D001849 ORTHO05D004689 0.0e+00 1384.0 1093 64.0
Aqoxy7G04006 Aquilegia oxysepala HOM05D001849 ORTHO05D004689 0.0e+00 1379.0 1091 65.0
Peaxi162Scf00177g00518 Petunia axillaris HOM05D001849 ORTHO05D004689 0.0e+00 1377.8 1089 64.3
Rhsim08G0241300 Rhododendron simsii HOM05D001849 ORTHO05D004689 0.0e+00 1372.1 1090 65.2
PSO724G1390 Papaver somniferum HOM05D001849 ORTHO05D004689 0.0e+00 1370.1 1099 64.3
AUR62001443 Chenopodium quinoa HOM05D001849 ORTHO05D004689 0.0e+00 1368.2 1095 64.0
PSO386G0179 Papaver somniferum HOM05D001849 ORTHO05D004689 0.0e+00 1368.2 1093 64.2
SalBow7G1889 Salvia bowleyana HOM05D001849 ORTHO05D004689 0.0e+00 1365.1 1217 58.9
MELO3C024334.2 Cucumis melo HOM05D001849 ORTHO05D004689 0.0e+00 1360.9 1174 60.9
GSVIVG01016717001 Vitis vinifera HOM05D001849 ORTHO05D004689 0.0e+00 1350.5 880 75.1
ECA232G2821 Erigeron canadensis HOM05D001849 ORTHO05D004689 0.0e+00 1342.0 1092 63.7
Lsat_1_v5_gn_4_91381 Lactuca sativa HOM05D001849 ORTHO05D004689 0.0e+00 1340.5 1100 63.5
AUR62009922 Chenopodium quinoa HOM05D001849 ORTHO05D004689 0.0e+00 1339.7 1097 63.1
Atru.chr2.1505 Acer truncatum HOM05D001849 ORTHO05D004689 0.0e+00 1329.3 881 73.9
HanXRQChr09g0277131 Helianthus annuus HOM05D001849 ORTHO05D004689 0.0e+00 1324.7 1094 63.0
ATR0681G401 Amborella trichopoda HOM05D001849 ORTHO05D004689 0.0e+00 1301.2 1095 60.9
Actinidia32206 Actinidia chinensis HOM05D001849 ORTHO05D004689 0.0e+00 1297.7 1096 62.0
Cc04_g01040 Coffea canephora HOM05D001849 ORTHO05D004689 0.0e+00 1296.6 881 71.6
Eucgr.K02038 Eucalyptus grandis HOM05D001849 ORTHO05D004689 0.0e+00 1284.2 876 71.9
TAR626G0833 Trochodendron aralioides HOM05D001849 ORTHO05D004689 0.0e+00 1278.8 856 73.1
Dinv20408 Davidia involucrata HOM05D001849 ORTHO05D004689 0.0e+00 1262.7 829 74.7
CAN.G1243.9 Capsicum annuum HOM05D001849 ORTHO05D004689 0.0e+00 1244.6 867 70.2
HPP92_022009 Vanilla planifolia HOM05D001849 ORTHO05D004689 0.0e+00 1236.5 1097 60.2
Oeu008524.4 Olea europaea HOM05D001849 ORTHO05D004689 0.0e+00 1222.2 1220 55.3
Hund18672 Selenicereus undatus HOM05D001849 ORTHO05D004689 0.0e+00 1219.9 880 68.8
CSS0050059 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 0.0e+00 1218.8 1005 64.3
Migut.D00924 Erythranthe guttata HOM05D001849 ORTHO05D004689 0.0e+00 1212.6 939 65.6
CSS0003623 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 0.0e+00 1206.4 1014 63.5
Zm00001eb165950 Zea mays HOM05D001849 ORTHO05D004689 0.0e+00 1202.6 1107 58.2
CDE06G0404 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 0.0e+00 1194.5 1056 60.2
Nitab4.5_0000189g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004689 0.0e+00 1186.4 835 69.3
A01p39550 Brassica napus HOM05D001849 ORTHO05D004689 0.0e+00 1142.9 1095 57.4
unitig_578.g16691 Utricularia gibba HOM05D001849 ORTHO05D004689 0.0e+00 1117.1 1068 55.8
CDE07G1134 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 0.0e+00 1104.7 879 63.9
Ca_23411_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004689 2.9e-306 1055.4 718 75.5
Hma1.2p1_0229F.1_g096770 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 4.8e-301 1038.1 710 72.3
SHI25232 Sapria himalayana HOM05D001849 ORTHO05D004689 1.1e-278 963.8 907 56.7
AagrBONN_evm.TU.Sc2ySwM_362.2383 Anthoceros agrestis HOM05D001849 ORTHO05D004689 5.7e-262 908.3 1106 46.4
Mapoly0024s0112 Marchantia polymorpha HOM05D001849 ORTHO05D004689 9.8e-262 907.5 1120 46.6
Hma1.2p1_0229F.1_g096760 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 6.5e-258 894.8 608 71.7
Nitab4.5_0004322g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004689 3.4e-254 882.5 651 67.6
Pp3c8_15880 Physcomitrium patens HOM05D001849 ORTHO05D004689 6.6e-250 868.2 980 47.9
SMO304G0023 Selaginella moellendorffii HOM05D001849 ORTHO05D004689 1.5e-214 750.7 951 44.5
CARHR088980 Cardamine hirsuta HOM05D001849 ORTHO05D004689 5.6e-201 705.7 499 71.3
BraA01t03995Z Brassica rapa HOM05D001849 ORTHO05D004689 7.6e-198 695.3 536 68.1
Ca_23412_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004689 4.2e-196 689.5 405 87.4
Os11g0643700 Oryza sativa ssp. japonica HOM05D001849 ORTHO05D004689 1.7e-152 544.7 472 61.0
CBR_g39720 Chara braunii HOM05D001849 ORTHO05D004689 9.1e-143 512.3 1093 33.4
FAN05G4033 Fragaria x ananassa HOM05D001849 ORTHO05D004689 9.5e-140 502.3 398 65.8
Cpa.g.sc169.27 Carica papaya HOM05D001849 ORTHO05D004689 5.4e-119 433.3 321 68.2
SEGI_21815 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 8.6e-117 426.0 389 55.8
Cpa.g.sc169.28 Carica papaya HOM05D001849 ORTHO05D004689 7.3e-92 343.2 245 69.4
Lalb_Chr10g0101331 Lupinus albus HOM05D001849 ORTHO05D004689 1.8e-85 322.0 207 80.2
Glyma.16G010300 Glycine max HOM05D001849 ORTHO05D004689 5.6e-84 317.0 161 96.3
QL11p014752 Quercus lobata HOM05D001849 ORTHO05D004689 4.3e-76 290.8 297 53.9
CSS0033574 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 8.4e-72 276.6 223 64.6
CSS0020573 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 8.2e-67 260.0 239 57.7
GSVIVG01016718001 Vitis vinifera HOM05D001849 ORTHO05D004689 5.3e-58 230.7 220 59.1
Cpa.g.sc169.30 Carica papaya HOM05D001849 ORTHO05D004689 6.5e-56 223.8 174 63.8
CSS0047517 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 7.4e-52 210.3 174 64.9
Cc04_g01050 Coffea canephora HOM05D001849 ORTHO05D004689 9.7e-52 209.9 234 54.3
CSS0019722 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 3.2e-47 194.9 194 59.3
HPP92_021920 Vanilla planifolia HOM05D001849 ORTHO05D004689 3.9e-45 188.0 144 65.3
SEGI_09459 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 1.9e-39 169.1 170 51.8
CAN.G1243.8 Capsicum annuum HOM05D001849 ORTHO05D004689 4.7e-38 164.5 183 53.0
Lsat_1_v5_gn_3_42421 Lactuca sativa HOM05D001849 ORTHO05D004689 6.1e-38 164.1 172 50.6
Duzib235G0009 Durio zibethinus HOM05D001849 ORTHO05D004689 3.4e-36 158.3 174 54.6
MBI18_g40032_MAGBIO Magnolia biondii HOM05D000132 ORTHO05D000058 3.4e-36 158.3 104 73.1
CDE07G1706 Ceratophyllum demersum HOM05D001849 ORTHO05D004689 2.8e-35 155.2 208 48.1
Cpa.g.sc169.33 Carica papaya HOM05D001849 ORTHO05D004689 9.1e-34 150.2 170 50.6
TAR730G0002 Trochodendron aralioides HOM05D001849 ORTHO05D004689 1.6e-33 149.4 153 55.6
CSS0036461 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 8.5e-32 143.7 103 65.0
Lsat_1_v5_gn_8_46020 Lactuca sativa HOM05D001849 ORTHO05D004689 4.2e-31 141.4 107 68.2
CSS0036362 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 9.4e-31 140.2 99 64.6
Cpa.g.sc169.31 Carica papaya HOM05D001849 ORTHO05D004689 1.8e-29 136.0 91 71.4
Hund18673 Selenicereus undatus HOM05D001849 ORTHO05D004689 3.0e-29 135.2 173 49.7
SEGI_30532 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 5.2e-29 134.4 97 63.9
Cpa.g.sc169.29 Carica papaya HOM05D001849 ORTHO05D004689 9.8e-28 130.2 93 65.6
Lsat_1_v5_gn_7_52500 Lactuca sativa HOM05D001849 ORTHO05D004689 5.5e-23 114.4 181 39.2
HanXRQChr11g0341991 Helianthus annuus HOM05D001849 ORTHO05D004689 1.4e-21 109.8 76 68.4
CSS0004697 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 9.8e-20 103.6 103 50.5
PRCOL_00005073 Prasinoderma coloniale HOM05D001849 ORTHO05D004689 2.2e-19 102.4 431 28.5
SEGI_11558 Sequoiadendron giganteum HOM05D001849 ORTHO05D004689 3.2e-18 98.6 93 53.8
MCO04G165 Micromonas commoda HOM05D001849 ORTHO05D004689 9.2e-18 97.1 448 26.3
Atru.chr12.2396 Acer truncatum HOM05D001849 ORTHO05D004689 1.3e-16 93.2 136 45.6
PGSC0003DMG402004368 Solanum tuberosum HOM05D001849 ORTHO05D004689 1.3e-16 93.2 73 60.3
BcaNung06672 Brassica carinata HOM05D001849 ORTHO05D004689 5.2e-13 81.3 207 31.9
MBI03_g16538_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 8.3e-11 73.9 73 52.1
MBI13_g27860_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 1.1e-10 73.6 52 69.2
MBI04_g26258_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 1.4e-10 73.2 77 51.9
Hma1.2p1_0225F.1_g094790 Hydrangea macrophylla HOM05D001849 ORTHO05D004689 2.7e-09 68.9 139 37.4
MBI15_g17575_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004689 2.7e-09 68.9 51 66.7
Zm00001eb307710 Zea mays HOM05D001849 ORTHO05D004689 3.5e-09 68.6 69 56.5
BolC2t10453H Brassica oleracea HOM05D001849 ORTHO05D004689 4.6e-09 68.2 53 64.2
SMO304G0058 Selaginella moellendorffii HOM05D042764 ORTHO05D004689 3.0e-08 65.5 190 28.4
C02p44100 Brassica napus HOM05D001849 ORTHO05D004689 5.0e-08 64.7 53 62.3
Atru.chr12.2376 Acer truncatum HOM05D001849 ORTHO05D004689 1.1e-07 63.5 84 46.4
SMO164G0082 Selaginella moellendorffii HOM05D027722 ORTHO05D004689 1.6e-06 59.7 155 27.1
C01p30760 Brassica napus HOM05D001849 ORTHO05D042635 3.6e-06 58.5 37 75.7
SMO304G0098 Selaginella moellendorffii HOM05D027722 ORTHO05D004689 3.6e-06 58.5 145 30.3
CSS0002239 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004689 6.2e-06 57.8 41 68.3
SMO304G0054 Selaginella moellendorffii HOM05D027722 ORTHO05D004689 8.1e-06 57.4 145 30.3


User provided reference genes

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