Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G032850 Glycine max HOM05D001432 ORTHO05D044733 5.3e-44 180.6 91 100.0
VMungo0331G1721 Vigna mungo HOM05D001432 ORTHO05D009001 1.4e-20 102.8 63 82.5
Ca_07177_v3 Cicer arietinum L. HOM05D001432 ORTHO05D009001 1.0e-18 96.7 61 83.6
Phvul.010G153200 Phaseolus vulgaris HOM05D001432 ORTHO05D009001 2.2e-18 95.5 59 83.1
TPR.G22889 Trifolium pratense HOM05D001432 ORTHO05D009001 5.0e-18 94.4 61 80.3
Medtr4g011370 Medicago truncatula HOM05D001432 ORTHO05D009001 5.5e-17 90.9 61 77.0
Psat7g254920 Pisum sativum HOM05D001432 ORTHO05D009001 7.2e-17 90.5 61 77.0
Lj3g0019131 Lotus japonicus HOM05D001432 ORTHO05D009001 1.6e-16 89.4 61 73.8
Thecc.06G074500 Theobroma cacao HOM05D001432 ORTHO05D009001 2.7e-16 88.6 61 70.5
Ciclev10025319m.g Citrus clementina HOM05D001432 ORTHO05D009001 1.1e-14 83.2 58 69.0
arahy.Tifrunner.gnm1.ann1.NTT2QB Arachis hypogaea HOM05D001432 ORTHO05D009001 3.3e-14 81.6 52 76.9
Hund00555 Selenicereus undatus HOM05D001432 ORTHO05D009001 3.3e-14 81.6 59 62.7
Atru.chr1.3144 Acer truncatum HOM05D001432 ORTHO05D009001 5.7e-14 80.9 59 67.8
Cc04_g03940 Coffea canephora HOM05D001432 ORTHO05D009001 7.4e-14 80.5 61 67.2
TAR383G0401 Trochodendron aralioides HOM05D001432 ORTHO05D009001 2.8e-13 78.6 58 67.2
arahy.Tifrunner.gnm1.ann1.P8UK8X Arachis hypogaea HOM05D001432 ORTHO05D009001 3.7e-13 78.2 52 75.0
AUR62016390 Chenopodium quinoa HOM05D001432 ORTHO05D009001 8.2e-13 77.0 60 68.3
Solyc12g042910.2 Solanum lycopersicum HOM05D001432 ORTHO05D009001 1.1e-12 76.6 60 68.3
GSVIVG01017239001 Vitis vinifera HOM05D001432 ORTHO05D009001 1.1e-12 76.6 61 62.3
Sopen12g022090 Solanum pennellii HOM05D001432 ORTHO05D009001 1.4e-12 76.3 60 68.3
TWI12G0405 Tripterygium wilfordii HOM05D001432 ORTHO05D009001 1.8e-12 75.9 60 61.7
Nn8g39367 Nelumbo nucifera HOM05D001432 ORTHO05D009001 2.4e-12 75.5 61 60.7
PGSC0003DMG400028620 Solanum tuberosum HOM05D001432 ORTHO05D009001 2.4e-12 75.5 60 66.7
AUR62011574 Chenopodium quinoa HOM05D001432 ORTHO05D009001 3.1e-12 75.1 60 66.7
Haze_16505 Corylus avellana HOM05D001432 ORTHO05D009001 3.1e-12 75.1 61 60.7
Duzib235G0345 Durio zibethinus HOM05D001432 ORTHO05D009001 3.1e-12 75.1 63 65.1
Ah.01g020870 Amaranthus hybridus HOM05D001432 ORTHO05D009001 4.1e-12 74.7 59 64.4
Aqoxy7G02054 Aquilegia oxysepala HOM05D001432 ORTHO05D009001 4.1e-12 74.7 61 59.0
PGR031G1163 Punica granatum HOM05D001432 ORTHO05D009001 4.1e-12 74.7 53 69.8
CAN.G303.78 Capsicum annuum HOM05D001432 ORTHO05D009001 5.3e-12 74.3 59 67.8
CiPaw.02G154200 Carya illinoinensis HOM05D001432 ORTHO05D009001 6.9e-12 73.9 52 69.2
EL10Ac9g21949 Beta vulgaris HOM05D001432 ORTHO05D009001 9.1e-12 73.6 61 60.7
CANSAT56G2537 Cannabis sativa HOM05D001432 ORTHO05D009001 9.1e-12 73.6 62 61.3
Cpa.g.sc10.218 Carica papaya HOM05D001432 ORTHO05D009001 1.2e-11 73.2 57 66.7
Cfa002016 Carpinus fangiana HOM05D001432 ORTHO05D009001 1.2e-11 73.2 61 59.0
Potri.003G060000 Populus trichocarpa HOM05D001432 ORTHO05D009001 1.5e-11 72.8 58 58.6
Sc10g0005650 Simmondsia chinensis HOM05D001432 ORTHO05D009001 1.5e-11 72.8 58 62.1
MD17G1203600 Malus domestica HOM05D001432 ORTHO05D009001 2.0e-11 72.4 61 62.3
Nitab4.5_0006854g0010 Nicotiana tabacum HOM05D001432 ORTHO05D009001 2.0e-11 72.4 62 66.1
Oeu015234.1 Olea europaea HOM05D001432 ORTHO05D009001 2.0e-11 72.4 61 60.7
MBI01_g07130_MAGBIO Magnolia biondii HOM05D001432 ORTHO05D009001 5.9e-11 70.9 59 59.3
MBI01_g24081_MAGBIO Magnolia biondii HOM05D001432 ORTHO05D009001 5.9e-11 70.9 59 59.3
Lsat_1_v5_gn_4_104581 Lactuca sativa HOM05D001432 ORTHO05D009001 1.0e-10 70.1 59 54.2
Nitab4.5_0003011g0090 Nicotiana tabacum HOM05D001432 ORTHO05D009001 1.0e-10 70.1 60 65.0
AL3G28260 Arabidopsis lyrata HOM05D001432 ORTHO05D009001 1.3e-10 69.7 58 55.2
AT3G15620 Arabidopsis thaliana HOM05D001432 ORTHO05D009001 2.2e-10 68.9 58 55.2
BcaC09g48531 Brassica carinata HOM05D001432 ORTHO05D009001 2.2e-10 68.9 45 68.9
C01p48790 Brassica napus HOM05D001432 ORTHO05D009001 2.2e-10 68.9 45 68.9
BolC1t04834H Brassica oleracea HOM05D001432 ORTHO05D009001 2.2e-10 68.9 45 68.9
CSS0039762 Camellia sinensis var. sinensis HOM05D001432 ORTHO05D009001 2.2e-10 68.9 57 57.9
Manes.04G117500 Manihot esculenta HOM05D001432 ORTHO05D009001 2.2e-10 68.9 57 54.4
FvH4_6g30470 Fragaria vesca HOM05D001432 ORTHO05D009001 2.9e-10 68.6 45 73.3
FAN05G1517 Fragaria x ananassa HOM05D001432 ORTHO05D009001 2.9e-10 68.6 45 73.3
FAN14G3546 Fragaria x ananassa HOM05D001432 ORTHO05D009001 2.9e-10 68.6 45 73.3
Actinidia16000 Actinidia chinensis HOM05D001262 ORTHO05D009001 3.8e-10 68.2 57 57.9
A01p38460 Brassica napus HOM05D001432 ORTHO05D009001 3.8e-10 68.2 49 65.3
Gohir.A06G119300 Gossypium hirsutum HOM05D001432 ORTHO05D009001 5.0e-10 67.8 43 72.1
THA.LOC104818045 Tarenaya hassleriana HOM05D001432 ORTHO05D009001 5.0e-10 67.8 58 55.2
Eucgr.J03037 Eucalyptus grandis HOM05D001432 ORTHO05D009001 6.5e-10 67.4 48 64.6
QL05p034025 Quercus lobata HOM05D001432 ORTHO05D009001 6.5e-10 67.4 62 59.7
Sabra03G0034400 Salix brachista HOM05D001432 ORTHO05D009001 6.5e-10 67.4 57 59.6
vmacro16924 Vaccinium macrocarpon HOM05D001432 ORTHO05D009001 6.5e-10 67.4 58 56.9
Rhsim12G0193900 Rhododendron simsii HOM05D001432 ORTHO05D009001 8.5e-10 67.0 57 56.1
BraA01t03896Z Brassica rapa HOM05D001432 ORTHO05D009001 1.1e-09 66.6 49 63.3
Prupe.3G078500 Prunus persica HOM05D001432 ORTHO05D009001 1.1e-09 66.6 61 54.1
SGA_v2.0_scaffold5G02656 Striga asiatica HOM05D001432 ORTHO05D009001 1.1e-09 66.6 59 59.3
Carub.0003s1537 Capsella rubella HOM05D001432 ORTHO05D009001 3.2e-09 65.1 57 56.1
CsaV3_7G032700 Cucumis sativus L. HOM05D001432 ORTHO05D009001 3.2e-09 65.1 60 55.0
Sp3g13920 Schrenkiella parvula HOM05D001432 ORTHO05D009001 3.2e-09 65.1 48 60.4
Gorai.010G143600 Gossypium raimondii HOM05D001432 ORTHO05D009001 4.2e-09 64.7 43 69.8
Aa31LG8G2830 Aethionema arabicum HOM05D001432 ORTHO05D009001 5.5e-09 64.3 59 54.2
RcHm_v2.0_Chr2g0136821 Rosa chinensis HOM05D001432 ORTHO05D009001 5.5e-09 64.3 45 68.9
Thhalv10020425m.g Eutrema salsugineum HOM05D001432 ORTHO05D009001 7.2e-09 63.9 48 60.4
HanXRQChr09g0274891 Helianthus annuus HOM05D001432 ORTHO05D009001 7.2e-09 63.9 59 52.5
COL.COLO4_12883 Corchorus olitorius HOM05D001432 ORTHO05D044733 9.4e-09 63.5 45 66.7
MELO3C023394.2 Cucumis melo HOM05D001432 ORTHO05D009001 1.2e-08 63.2 59 49.2
CARHR090710 Cardamine hirsuta HOM05D001432 ORTHO05D009001 2.7e-08 62.0 59 50.8
Migut.I00806 Erythranthe guttata HOM05D001432 ORTHO05D009001 3.6e-08 61.6 60 56.7
Gohir.D06G123500 Gossypium hirsutum HOM05D001432 ORTHO05D009001 4.7e-08 61.2 43 67.4
Sed0021672 Sechium edule HOM05D001432 ORTHO05D009001 6.1e-08 60.8 59 50.8
ClCG09G002630 Citrullus lanatus HOM05D001432 ORTHO05D009001 7.9e-08 60.5 59 55.9
PSO455G0239 Papaver somniferum HOM05D001432 ORTHO05D009001 1.4e-07 59.7 60 56.7
CDE04G0156 Ceratophyllum demersum HOM05D001432 ORTHO05D009001 1.8e-07 59.3 58 53.4
unitig_62.g23602 Utricularia gibba HOM05D001315 ORTHO05D001618 2.3e-07 58.9 46 56.5
PSO170G4564 Papaver somniferum HOM05D001432 ORTHO05D009001 5.1e-07 57.8 60 53.3
Peaxi162Scf00034g01311 Petunia axillaris HOM05D001432 ORTHO05D009001 1.1e-06 56.6 44 65.9
SalBow2G3379 Salvia bowleyana HOM05D001432 ORTHO05D009001 7.4e-06 53.9 45 60.0


User provided reference genes

Program Settings