Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G229100 Glycine max HOM05D005043 ORTHO05D006182 1.1e-147 526.6 258 100.0
Glyma.12G157700 Glycine max HOM05D005043 ORTHO05D006182 2.1e-122 442.6 278 80.6
Phvul.011G162300 Phaseolus vulgaris HOM05D005043 ORTHO05D006182 2.1e-122 442.6 258 85.3
TPR.G12585 Trifolium pratense HOM05D005043 ORTHO05D006182 1.5e-112 409.8 252 81.7
Ca_26224_v3 Cicer arietinum L. HOM05D005043 ORTHO05D006182 3.4e-112 408.7 248 80.6
VMungo1127G0129 Vigna mungo HOM05D005043 ORTHO05D006182 9.8e-112 407.1 339 64.9
Lalb_Chr03g0031161 Lupinus albus HOM05D005043 ORTHO05D006182 8.6e-108 394.0 252 77.8
Medtr6g466500 Medicago truncatula HOM05D005043 ORTHO05D006182 1.4e-105 386.7 244 77.5
arahy.Tifrunner.gnm1.ann1.NUK3H0 Arachis hypogaea HOM05D005043 ORTHO05D006182 7.5e-104 380.9 274 72.3
Lalb_Chr19g0133801 Lupinus albus HOM05D005043 ORTHO05D006182 6.4e-103 377.9 220 83.6
Prupe.4G164600 Prunus persica HOM05D005043 ORTHO05D006182 8.3e-103 377.5 238 75.6
arahy.Tifrunner.gnm1.ann1.5E18AM Arachis hypogaea HOM05D005043 ORTHO05D006182 1.4e-102 376.7 280 70.4
GSVIVG01014196001 Vitis vinifera HOM05D005043 ORTHO05D006182 4.6e-101 371.7 234 76.5
MD11G1263900 Malus domestica HOM05D005043 ORTHO05D006182 3.0e-100 369.0 236 75.8
Gohir.D01G042722 Gossypium hirsutum HOM05D005043 ORTHO05D006182 8.6e-100 367.5 237 73.4
Gorai.002G054600 Gossypium raimondii HOM05D005043 ORTHO05D006182 8.6e-100 367.5 237 73.4
Cpa.g.sc77.9 Carica papaya HOM05D005043 ORTHO05D006182 5.6e-99 364.8 237 72.6
Thecc.07G117100 Theobroma cacao HOM05D005043 ORTHO05D006182 5.6e-99 364.8 224 77.2
COL.COLO4_17542 Corchorus olitorius HOM05D005043 ORTHO05D006182 2.8e-98 362.5 228 75.9
Gohir.A01G054300 Gossypium hirsutum HOM05D005043 ORTHO05D006182 2.8e-98 362.5 224 75.9
Duzib213G0837 Durio zibethinus HOM05D005043 ORTHO05D006182 3.6e-98 362.1 223 76.2
Lj1C829T6 Lonicera japonica HOM05D005043 ORTHO05D006182 1.8e-97 359.8 249 70.3
vmacro11941 Vaccinium macrocarpon HOM05D005043 ORTHO05D006182 1.8e-97 359.8 219 76.7
vmacro23467 Vaccinium macrocarpon HOM05D005043 ORTHO05D006182 1.8e-97 359.8 219 76.7
ClCG11G017440 Citrullus lanatus HOM05D005043 ORTHO05D006182 2.3e-97 359.4 233 72.1
CANSAT35G1445 Cannabis sativa HOM05D005043 ORTHO05D006182 3.1e-97 359.0 229 76.9
Dinv18365 Davidia involucrata HOM05D005043 ORTHO05D006182 6.8e-97 357.8 257 69.6
Ciclev10023741m.g Citrus clementina HOM05D005043 ORTHO05D006182 8.9e-97 357.5 255 69.4
Atru.chr2.2132 Acer truncatum HOM05D005043 ORTHO05D006182 1.2e-96 357.1 245 71.0
FAN21G3659 Fragaria x ananassa HOM05D005043 ORTHO05D006182 1.2e-96 357.1 239 71.5
FAN25G1853 Fragaria x ananassa HOM05D005043 ORTHO05D006182 2.6e-96 355.9 239 71.5
TAR636G1993 Trochodendron aralioides HOM05D005043 ORTHO05D006182 3.4e-96 355.5 249 71.1
CsaV3_4G033100 Cucumis sativus L. HOM05D005043 ORTHO05D006182 4.4e-96 355.1 218 76.6
FvH4_3g18270 Fragaria vesca HOM05D005043 ORTHO05D006182 1.7e-95 353.2 239 70.7
Potri.001G390500 Populus trichocarpa HOM05D005043 ORTHO05D006182 1.7e-95 353.2 236 72.9
Rhsim06G0208200 Rhododendron simsii HOM05D005043 ORTHO05D006182 1.7e-95 353.2 243 69.5
PGR083G1657 Punica granatum HOM05D005043 ORTHO05D006182 2.2e-95 352.8 248 69.0
FAN11G3478 Fragaria x ananassa HOM05D005043 ORTHO05D006182 2.9e-95 352.4 239 70.3
Hma1.2p1_0290F.1_g114850 Hydrangea macrophylla HOM05D005043 ORTHO05D006182 3.7e-95 352.1 219 73.5
Nn7g37328 Nelumbo nucifera HOM05D005043 ORTHO05D006182 6.4e-95 351.3 212 78.3
FAN16G3394 Fragaria x ananassa HOM05D005043 ORTHO05D006182 8.3e-95 350.9 239 69.9
Sed0006465 Sechium edule HOM05D005043 ORTHO05D006182 8.3e-95 350.9 235 70.2
CiPaw.11G160200 Carya illinoinensis HOM05D005043 ORTHO05D006182 2.4e-94 349.4 237 72.2
Haze_09322 Corylus avellana HOM05D005043 ORTHO05D006182 4.1e-94 348.6 234 72.6
Lj3g0009561 Lotus japonicus HOM05D005043 ORTHO05D006182 5.4e-94 348.2 216 80.1
RcHm_v2.0_Chr5g0030901 Rosa chinensis HOM05D005043 ORTHO05D006182 5.4e-94 348.2 236 70.8
TWI38G0078 Tripterygium wilfordii HOM05D005043 ORTHO05D006182 1.3e-92 343.6 241 67.6
Oeu031030.1 Olea europaea HOM05D005043 ORTHO05D006182 3.0e-92 342.4 241 69.7
A05p34520 Brassica napus HOM05D005043 ORTHO05D006182 3.9e-92 342.0 216 75.5
BraA05t22272Z Brassica rapa HOM05D005043 ORTHO05D006182 3.9e-92 342.0 216 75.5
AL3G27210 Arabidopsis lyrata HOM05D005043 ORTHO05D006182 5.1e-92 341.7 268 65.7
Sabra16G0255900 Salix brachista HOM05D005043 ORTHO05D006182 5.1e-92 341.7 236 70.8
Migut.M00727 Erythranthe guttata HOM05D005043 ORTHO05D006182 6.6e-92 341.3 235 70.6
DCAR_017172 Daucus carota HOM05D005043 ORTHO05D006182 1.1e-91 340.5 246 67.5
Manes.15G094900 Manihot esculenta HOM05D005043 ORTHO05D006182 1.5e-91 340.1 209 76.6
arahy.Tifrunner.gnm1.ann1.3VV2Z3 Arachis hypogaea HOM05D005043 ORTHO05D006182 2.5e-91 339.3 208 79.8
BcaB06g29516 Brassica carinata HOM05D005043 ORTHO05D006182 4.3e-91 338.6 238 70.2
HanXRQChr13g0390281 Helianthus annuus HOM05D005043 ORTHO05D006182 4.3e-91 338.6 256 68.8
BcaB06g25330 Brassica carinata HOM05D005043 ORTHO05D006182 5.6e-91 338.2 216 75.0
BolC5t33915H Brassica oleracea HOM05D005043 ORTHO05D006182 9.5e-91 337.4 253 66.4
CDE09G1444 Ceratophyllum demersum HOM05D005043 ORTHO05D006182 1.2e-90 337.0 205 78.5
AT3G14890 Arabidopsis thaliana HOM05D005043 ORTHO05D006182 1.6e-90 336.7 216 75.0
Aa31LG8G2100 Aethionema arabicum HOM05D005043 ORTHO05D006182 2.8e-90 335.9 252 65.9
ECA240G3232 Erigeron canadensis HOM05D005043 ORTHO05D006182 3.6e-90 335.5 207 77.3
HanXRQChr12g0362951 Helianthus annuus HOM05D005043 ORTHO05D006182 4.7e-90 335.1 256 68.4
C05p52260 Brassica napus HOM05D005043 ORTHO05D006182 1.1e-89 334.0 239 69.9
PSO384G1010 Papaver somniferum HOM05D005043 ORTHO05D006182 4.0e-89 332.0 230 70.4
A03p39040 Brassica napus HOM05D005043 ORTHO05D006182 5.2e-89 331.6 233 70.4
BraA03t13053Z Brassica rapa HOM05D005043 ORTHO05D006182 5.2e-89 331.6 233 70.4
vmacro23385 Vaccinium macrocarpon HOM05D005043 ORTHO05D006182 5.2e-89 331.6 220 71.4
MSTRG.12865 Avicennia marina HOM05D005043 ORTHO05D006182 6.8e-89 331.3 203 76.4
Sopen07g030670 Solanum pennellii HOM05D005043 ORTHO05D006182 6.8e-89 331.3 251 64.9
C03p47310 Brassica napus HOM05D005043 ORTHO05D006182 1.2e-88 330.5 252 65.9
BolC3t17001H Brassica oleracea HOM05D005043 ORTHO05D006182 1.2e-88 330.5 252 66.3
THA.LOC104822566 Tarenaya hassleriana HOM05D005043 ORTHO05D006182 1.2e-88 330.5 240 67.9
Carub.0003s1455 Capsella rubella HOM05D005043 ORTHO05D006182 2.0e-88 329.7 207 76.3
Sp3g13100 Schrenkiella parvula HOM05D005043 ORTHO05D006182 3.4e-88 328.9 233 70.0
EL10Ac4g08345 Beta vulgaris HOM05D005043 ORTHO05D006182 4.4e-88 328.6 256 66.4
Lsat_1_v5_gn_9_99860 Lactuca sativa HOM05D005043 ORTHO05D006182 5.8e-88 328.2 256 63.7
Solyc07g062430.3 Solanum lycopersicum HOM05D005043 ORTHO05D006182 5.8e-88 328.2 254 63.8
Eucgr.F01242 Eucalyptus grandis HOM05D005043 ORTHO05D006182 1.7e-87 326.6 230 68.3
Thhalv10020510m.g Eutrema salsugineum HOM05D005043 ORTHO05D006182 1.7e-87 326.6 252 63.9
PSO478G3490 Papaver somniferum HOM05D005043 ORTHO05D006182 2.9e-87 325.9 248 65.7
Cc05_g11070 Coffea canephora HOM05D005043 ORTHO05D006182 3.7e-87 325.5 248 64.1
Peaxi162Scf00111g01457 Petunia axillaris HOM05D005043 ORTHO05D006182 3.7e-87 325.5 251 62.2
CARHR089830 Cardamine hirsuta HOM05D005043 ORTHO05D006182 6.4e-87 324.7 252 64.3
PSO782G2110 Papaver somniferum HOM05D005043 ORTHO05D006182 1.9e-86 323.2 246 67.1
SGA_v2.0_scaffold70G23376 Striga asiatica HOM05D005043 ORTHO05D006182 3.2e-86 322.4 261 63.6
AUR62019576 Chenopodium quinoa HOM05D005043 ORTHO05D006182 4.1e-86 322.0 233 67.8
CAN.G375.16 Capsicum annuum HOM05D005043 ORTHO05D006182 9.2e-86 320.9 251 64.1
PGSC0003DMG400007070 Solanum tuberosum HOM05D005043 ORTHO05D006182 4.6e-85 318.5 252 61.9
MBI06_g29324_MAGBIO Magnolia biondii HOM05D005043 ORTHO05D006182 6.0e-85 318.2 327 52.6
SalBow8G1024 Salvia bowleyana HOM05D005043 ORTHO05D006182 6.6e-84 314.7 236 66.9
unitig_749.g13541 Utricularia gibba HOM05D005043 ORTHO05D006182 8.1e-82 307.8 209 68.4
Aqoxy7G03872 Aquilegia oxysepala HOM05D005043 ORTHO05D006182 4.0e-81 305.4 261 59.0
arahy.Tifrunner.gnm1.ann1.5IY6XE Arachis hypogaea HOM05D005043 ORTHO05D006182 3.2e-78 295.8 208 72.6
SalBow1G3547 Salvia bowleyana HOM05D005043 ORTHO05D006182 9.9e-72 274.2 236 60.2
MELO3C025641.2 Cucumis melo HOM05D005043 ORTHO05D006182 4.6e-69 265.4 218 61.5
HPP92_009836 Vanilla planifolia HOM05D005043 ORTHO05D006182 4.6e-69 265.4 175 70.9
QL08p026231 Quercus lobata HOM05D005043 ORTHO05D006182 5.6e-67 258.5 149 81.9
Os01g0737300 Oryza sativa ssp. japonica HOM05D005043 ORTHO05D006182 2.6e-64 249.6 209 59.8
SMO137G0206 Selaginella moellendorffii HOM05D005043 ORTHO05D006182 2.6e-64 249.6 194 60.8
ATR1131G028 Amborella trichopoda HOM05D005043 ORTHO05D006182 9.9e-64 247.7 174 66.1
Pp3c6_17140 Physcomitrium patens HOM05D005043 ORTHO05D006182 2.9e-63 246.1 205 60.0
AUR62042780 Chenopodium quinoa HOM05D005043 ORTHO05D006182 3.2e-62 242.7 150 75.3
Thecc.07G116500 Theobroma cacao HOM05D005043 ORTHO05D006182 4.3e-59 232.3 142 77.5
CBR_g66772 Chara braunii HOM05D005043 ORTHO05D006182 1.3e-55 220.7 205 54.1
Mapoly0056s0069 Marchantia polymorpha HOM05D005043 ORTHO05D006182 1.4e-54 217.2 251 44.6
AagrBONN_evm.TU.Sc2ySwM_228.1872 Anthoceros agrestis HOM05D005043 ORTHO05D006182 1.5e-48 197.2 215 48.8
Ah.04g164250 Amaranthus hybridus HOM05D005043 ORTHO05D006182 8.4e-47 191.4 122 75.4
Sc16g0007590 Simmondsia chinensis HOM05D005043 ORTHO05D006182 1.1e-43 181.0 146 62.3
Nitab4.5_0006953g0040 Nicotiana tabacum HOM05D005043 ORTHO05D006182 3.7e-42 176.0 237 42.2
Psat3g077040 Pisum sativum HOM05D005043 ORTHO05D006182 5.9e-32 142.1 298 34.9
Hma1.2p1_0113F.1_g055130 Hydrangea macrophylla HOM05D005043 ORTHO05D006182 1.3e-31 141.0 93 74.2
MCO04G542 Micromonas commoda HOM05D005043 ORTHO05D006182 2.6e-27 126.7 193 37.3
Cre09.g388726 Chlamydomonas reinhardtii HOM05D005043 ORTHO05D006182 7.4e-27 125.2 190 36.3
Nitab4.5_0003565g0060 Nicotiana tabacum HOM05D005043 ORTHO05D006182 6.3e-26 122.1 89 61.8
CSS0039124 Camellia sinensis var. sinensis HOM05D005043 ORTHO05D006182 8.5e-23 111.7 71 74.6
SHI37131 Sapria himalayana HOM05D005043 ORTHO05D006182 6.1e-21 105.5 65 76.9
PRCOL_00001017 Prasinoderma coloniale HOM05D005043 ORTHO05D006182 1.1e-19 101.3 204 33.3
QL08p026221 Quercus lobata HOM05D005043 ORTHO05D006182 1.5e-19 100.9 126 43.7
BcaNung07105 Brassica carinata HOM05D005043 ORTHO05D006182 3.3e-19 99.8 102 53.9
AUR62042782 Chenopodium quinoa HOM05D005043 ORTHO05D006182 1.4e-17 94.4 76 60.5
arahy.Tifrunner.gnm1.ann1.SEI0XU Arachis hypogaea HOM05D000735 ORTHO05D000838 5.9e-16 89.0 86 54.7
Medtr6g052005 Medicago truncatula HOM05D005043 ORTHO05D006182 1.5e-14 84.3 46 87.0
Medtr6g464930 Medicago truncatula HOM05D005043 ORTHO05D006182 4.2e-14 82.8 48 75.0
SEGI_01303 Sequoiadendron giganteum HOM05D005043 ORTHO05D006182 1.4e-12 77.8 56 66.1
SMO175G0006 Selaginella moellendorffii HOM05D017119 ORTHO05D006182 2.0e-11 73.9 57 52.6
CSS0012296 Camellia sinensis var. sinensis HOM05D005043 ORTHO05D006182 4.4e-11 72.8 36 88.9
Actinidia09808 Actinidia chinensis HOM05D005043 ORTHO05D006182 5.7e-11 72.4 53 64.2
RcHm_v2.0_Chr1g0352751 Rosa chinensis HOM05D005043 ORTHO05D006182 5.9e-08 62.4 41 63.4
Os01g0737401 Oryza sativa ssp. japonica HOM05D005043 ORTHO05D006182 1.1e-06 58.2 31 83.9


User provided reference genes

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