Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G046400 Glycine max HOM05D006776 ORTHO05D007603 1.9e-264 915.2 448 100.0
Glyma.04G045700 Glycine max HOM05D006776 ORTHO05D007603 3.1e-246 854.7 452 93.8
VMungo1309G0963 Vigna mungo HOM05D006776 ORTHO05D007603 3.9e-233 811.2 443 88.9
Lj1g0026753 Lotus japonicus HOM05D006776 ORTHO05D007603 1.2e-229 799.7 440 87.3
Phvul.009G071700 Phaseolus vulgaris HOM05D006776 ORTHO05D007603 3.4e-229 798.1 450 87.8
Lalb_Chr11g0062871 Lupinus albus HOM05D006776 ORTHO05D007603 1.2e-221 773.1 439 85.2
TPR.G33723 Trifolium pratense HOM05D006776 ORTHO05D007603 6.7e-217 757.3 439 83.8
Ca_15900_v3 Cicer arietinum L. HOM05D006776 ORTHO05D007603 1.5e-216 756.1 441 83.7
Medtr3g103170 Medicago truncatula HOM05D006776 ORTHO05D007603 3.3e-216 755.0 439 82.9
Psat5g038960 Pisum sativum HOM05D006776 ORTHO05D007603 4.8e-215 751.1 441 83.2
arahy.Tifrunner.gnm1.ann1.YEFH3D Arachis hypogaea HOM05D006776 ORTHO05D007603 3.1e-214 748.4 452 79.4
arahy.Tifrunner.gnm1.ann1.SBJ000 Arachis hypogaea HOM05D006776 ORTHO05D007603 1.7e-212 742.7 449 79.1
RcHm_v2.0_Chr6g0309581 Rosa chinensis HOM05D006776 ORTHO05D007603 1.4e-198 696.4 451 75.2
CANSAT21G2159 Cannabis sativa HOM05D006776 ORTHO05D007603 7.0e-198 694.1 450 74.2
CiPaw.07G175000 Carya illinoinensis HOM05D006776 ORTHO05D007603 7.7e-197 690.6 442 75.3
Prupe.1G422900 Prunus persica HOM05D006776 ORTHO05D007603 1.3e-196 689.9 448 75.2
MD15G1070100 Malus domestica HOM05D006776 ORTHO05D007603 1.1e-195 686.8 451 73.6
QL12p038088 Quercus lobata HOM05D006776 ORTHO05D007603 1.1e-195 686.8 485 69.7
Manes.05G181900 Manihot esculenta HOM05D006776 ORTHO05D007603 1.2e-194 683.3 454 73.3
FAN20G0940 Fragaria x ananassa HOM05D006776 ORTHO05D007603 1.6e-194 682.9 451 73.8
FAN15G0723 Fragaria x ananassa HOM05D006776 ORTHO05D007603 2.1e-194 682.6 451 73.8
FvH4_2g33100 Fragaria vesca HOM05D006776 ORTHO05D007603 3.6e-194 681.8 451 73.8
FAN27G1522 Fragaria x ananassa HOM05D006776 ORTHO05D007603 2.3e-193 679.1 451 73.4
FAN24G3456 Fragaria x ananassa HOM05D006776 ORTHO05D007603 5.2e-193 677.9 451 73.2
Thecc.08G088800 Theobroma cacao HOM05D006776 ORTHO05D007603 1.2e-192 676.8 451 72.3
Dinv39223 Davidia involucrata HOM05D006776 ORTHO05D007603 2.6e-192 675.6 459 71.7
Ciclev10001152m.g Citrus clementina HOM05D006776 ORTHO05D007603 6.3e-191 671.0 447 72.3
CSS0038791 Camellia sinensis var. sinensis HOM05D006776 ORTHO05D007603 2.4e-190 669.1 454 71.6
Atru.chr13.832 Acer truncatum HOM05D006776 ORTHO05D007603 3.1e-190 668.7 439 72.7
COL.COLO4_28506 Corchorus olitorius HOM05D006776 ORTHO05D007603 7.0e-190 667.5 451 70.5
GSVIVG01009344001 Vitis vinifera HOM05D006776 ORTHO05D007603 1.6e-189 666.4 459 71.7
Actinidia08248 Actinidia chinensis HOM05D006776 ORTHO05D007603 5.9e-189 664.5 459 69.9
Gohir.D05G213300 Gossypium hirsutum HOM05D006776 ORTHO05D007603 1.5e-187 659.8 451 71.2
Cpa.g.sc142.25 Carica papaya HOM05D006776 ORTHO05D007603 1.9e-187 659.4 437 72.8
Cfa013778 Carpinus fangiana HOM05D006776 ORTHO05D007603 3.2e-187 658.7 451 72.1
Gohir.A05G210000 Gossypium hirsutum HOM05D006776 ORTHO05D007603 1.2e-186 656.8 451 70.7
Potri.014G016100 Populus trichocarpa HOM05D006776 ORTHO05D007603 4.7e-186 654.8 454 70.7
Rhsim07G0219900 Rhododendron simsii HOM05D006776 ORTHO05D007603 4.7e-186 654.8 459 68.6
CsaV3_2G026140 Cucumis sativus L. HOM05D006776 ORTHO05D007603 2.3e-185 652.5 450 70.4
TAR376G1186 Trochodendron aralioides HOM05D006776 ORTHO05D007603 2.3e-185 652.5 457 70.5
Hma1.2p1_0819F.1_g223710 Hydrangea macrophylla HOM05D006776 ORTHO05D007603 8.8e-185 650.6 430 73.0
PGR083G0271 Punica granatum HOM05D006776 ORTHO05D007603 5.7e-184 647.9 450 70.4
EL10Ac1g02384 Beta vulgaris HOM05D006776 ORTHO05D007603 1.3e-183 646.7 458 68.8
MELO3C010806.2 Cucumis melo HOM05D006776 ORTHO05D007603 1.7e-183 646.4 456 69.7
Eucgr.F00083 Eucalyptus grandis HOM05D006776 ORTHO05D007603 2.4e-182 642.5 450 69.1
Cc10_g05780 Coffea canephora HOM05D006776 ORTHO05D007603 3.1e-182 642.1 458 69.7
ECA232G1156 Erigeron canadensis HOM05D006776 ORTHO05D007603 7.7e-181 637.5 450 69.8
PGSC0003DMG400011544 Solanum tuberosum HOM05D006776 ORTHO05D007603 7.7e-181 637.5 455 69.7
ClCG08G016470 Citrullus lanatus HOM05D006776 ORTHO05D007603 1.3e-180 636.7 444 69.6
Sed0026542 Sechium edule HOM05D006776 ORTHO05D007603 1.7e-180 636.3 435 70.8
Hund23872 Selenicereus undatus HOM05D006776 ORTHO05D007603 2.3e-180 636.0 456 67.8
Lsat_1_v5_gn_4_131640 Lactuca sativa HOM05D006776 ORTHO05D007603 1.9e-179 632.9 461 67.5
PSO170G0170 Papaver somniferum HOM05D006776 ORTHO05D007603 2.5e-179 632.5 455 69.0
MSTRG.22221 Avicennia marina HOM05D006776 ORTHO05D007603 7.2e-179 630.9 453 66.9
PSO017G0681 Papaver somniferum HOM05D006776 ORTHO05D007603 9.5e-179 630.6 455 68.8
Oeu053611.1 Olea europaea HOM05D006776 ORTHO05D007603 1.6e-178 629.8 457 67.2
TWI56G0429 Tripterygium wilfordii HOM05D006776 ORTHO05D007603 8.0e-178 627.5 444 69.1
Nitab4.5_0008551g0030 Nicotiana tabacum HOM05D006776 ORTHO05D007603 1.0e-177 627.1 437 70.0
Solyc12g088340.2 Solanum lycopersicum HOM05D006776 ORTHO05D007603 1.4e-177 626.7 455 68.4
Aqoxy5G00870 Aquilegia oxysepala HOM05D006776 ORTHO05D007603 1.8e-177 626.3 455 67.9
Haze_22436 Corylus avellana HOM05D006776 ORTHO05D007603 1.8e-177 626.3 402 75.9
HanXRQChr09g0266761 Helianthus annuus HOM05D006776 ORTHO05D007603 1.8e-177 626.3 449 67.9
Nitab4.5_0002314g0100 Nicotiana tabacum HOM05D006776 ORTHO05D007603 4.0e-177 625.2 455 68.1
Sopen12g030330 Solanum pennellii HOM05D006776 ORTHO05D007603 4.0e-177 625.2 455 68.1
DCAR_012816 Daucus carota HOM05D006776 ORTHO05D007603 6.8e-177 624.4 452 67.3
Nn1g04555 Nelumbo nucifera HOM05D006776 ORTHO05D007603 8.9e-177 624.0 457 66.5
Ah.11g042830 Amaranthus hybridus HOM05D006776 ORTHO05D007603 4.4e-176 621.7 457 65.9
Sabra14G0010000 Salix brachista HOM05D006776 ORTHO05D007603 4.9e-175 618.2 457 67.4
THA.LOC104814190 Tarenaya hassleriana HOM05D006776 ORTHO05D007603 1.8e-174 616.3 455 67.5
Migut.N02781 Erythranthe guttata HOM05D006776 ORTHO05D007603 4.1e-174 615.1 458 65.3
Lj4A758G74 Lonicera japonica HOM05D006776 ORTHO05D007603 2.7e-173 612.5 420 70.7
AL1G41330 Arabidopsis lyrata HOM05D006776 ORTHO05D007603 1.0e-172 610.5 451 65.6
AT1G27840 Arabidopsis thaliana HOM05D006776 ORTHO05D007603 5.0e-172 608.2 451 65.9
Gorai.009G219900 Gossypium raimondii HOM05D006776 ORTHO05D007603 1.9e-171 606.3 413 72.2
Sp1g24040 Schrenkiella parvula HOM05D006776 ORTHO05D007603 2.5e-171 605.9 451 65.9
SGA_v2.0_scaffold152G36804 Striga asiatica HOM05D006776 ORTHO05D007603 3.3e-171 605.5 510 59.0
CARHR027300 Cardamine hirsuta HOM05D006776 ORTHO05D007603 2.8e-170 602.4 450 66.0
C05p26470 Brassica napus HOM05D006776 ORTHO05D007603 1.8e-169 599.7 451 66.3
BolC5t31368H Brassica oleracea HOM05D006776 ORTHO05D007603 1.8e-169 599.7 451 66.3
BcaNung06155 Brassica carinata HOM05D006776 ORTHO05D007603 7.5e-168 594.3 453 66.0
A09p38320 Brassica napus HOM05D006776 ORTHO05D007603 7.5e-168 594.3 451 65.2
BraA09t39342Z Brassica rapa HOM05D006776 ORTHO05D007603 4.9e-167 591.7 452 65.0
Sc15g0005690 Simmondsia chinensis HOM05D006776 ORTHO05D007603 4.9e-167 591.7 409 70.4
HPP92_001976 Vanilla planifolia HOM05D006776 ORTHO05D007603 6.4e-167 591.3 452 63.3
unitig_578.g16149 Utricularia gibba HOM05D006776 ORTHO05D007603 7.0e-166 587.8 449 64.4
ATR0820G216 Amborella trichopoda HOM05D006776 ORTHO05D007603 4.6e-165 585.1 454 62.3
Peaxi162Scf00160g00527 Petunia axillaris HOM05D006776 ORTHO05D007603 1.3e-164 583.6 436 68.3
BcaNung06153 Brassica carinata HOM05D006776 ORTHO05D007603 7.3e-163 577.8 443 66.1
Aa31sc113G60 Aethionema arabicum HOM05D006776 ORTHO05D007603 8.0e-162 574.3 488 60.9
CDE04G2973 Ceratophyllum demersum HOM05D006776 ORTHO05D007603 4.0e-161 572.0 455 61.8
Duzib116G0586 Durio zibethinus HOM05D006776 ORTHO05D007603 2.0e-160 569.7 383 72.3
Thhalv10007615m.g Eutrema salsugineum HOM05D006776 ORTHO05D007603 3.7e-159 565.5 449 63.3
Hma1.2p1_0819F.1_g223700 Hydrangea macrophylla HOM05D006776 ORTHO05D007603 6.4e-159 564.7 385 71.9
AUR62038776 Chenopodium quinoa HOM05D006776 ORTHO05D007603 1.2e-157 560.5 397 69.0
Zm00001eb147340 Zea mays HOM05D006776 ORTHO05D007603 1.0e-156 557.4 446 60.3
vmacro22055 Vaccinium macrocarpon HOM05D006776 ORTHO05D007603 1.6e-141 506.9 372 67.2
Pp3c22_5850 Physcomitrium patens HOM05D006776 ORTHO05D007603 6.2e-130 468.4 457 49.9
MD08G1082700 Malus domestica HOM05D006776 ORTHO05D007603 2.6e-128 463.0 374 63.9
Mapoly0043s0035 Marchantia polymorpha HOM05D006776 ORTHO05D007603 6.7e-124 448.4 450 50.0
AT1G19750 Arabidopsis thaliana HOM05D006776 ORTHO05D007603 1.2e-120 437.6 335 66.0
BcaC05g26777 Brassica carinata HOM05D006776 ORTHO05D007603 1.9e-118 430.3 457 53.6
SMO203G0215 Selaginella moellendorffii HOM05D006776 ORTHO05D007603 3.2e-118 429.5 445 48.1
AagrBONN_evm.TU.Sc2ySwM_228.2971 Anthoceros agrestis HOM05D006776 ORTHO05D007603 8.7e-116 421.4 452 47.8
AUR62037473 Chenopodium quinoa HOM05D006776 ORTHO05D007603 9.0e-113 411.4 287 69.3
Carub.0001s2630 Capsella rubella HOM05D006776 ORTHO05D007603 4.6e-109 399.1 308 64.0
CBR_g4873 Chara braunii HOM05D006776 ORTHO05D007603 6.1e-101 372.1 514 39.7
CDE02G3909 Ceratophyllum demersum HOM05D006776 ORTHO05D007603 7.7e-96 355.1 369 50.4
SMO353G0131 Selaginella moellendorffii HOM05D006776 ORTHO05D007603 1.8e-89 334.0 452 41.8
MD08G1084000 Malus domestica HOM05D006776 ORTHO05D007603 1.3e-79 301.2 241 64.7
SEGI_38356 Sequoiadendron giganteum HOM05D006776 ORTHO05D007603 3.5e-72 276.6 197 63.5
SEGI_36074 Sequoiadendron giganteum HOM05D006776 ORTHO05D007603 6.8e-68 262.3 221 57.5
MCO02G266 Micromonas commoda HOM05D006776 ORTHO05D007603 3.5e-64 250.0 447 34.2
Os02g0307200 Oryza sativa ssp. japonica HOM05D006776 ORTHO05D007603 1.0e-60 238.4 186 61.8
Cre01.g032100 Chlamydomonas reinhardtii HOM05D006776 ORTHO05D007603 7.8e-40 169.1 294 36.1
PRCOL_00002749 Prasinoderma coloniale HOM05D006776 ORTHO05D007603 9.5e-38 162.2 452 28.3
Lsat_1_v5_gn_7_88960 Lactuca sativa HOM05D006776 ORTHO05D007603 1.3e-34 151.8 107 66.4
Cre01.g032139 Chlamydomonas reinhardtii HOM05D006776 ORTHO05D007603 8.4e-18 95.9 123 37.4
HanXRQChr04g0100971 Helianthus annuus HOM05D000464 ORTHO05D006292 2.4e-12 77.8 315 23.2
SGA_v2.0_scaffold7G04174 Striga asiatica HOM05D000464 ORTHO05D006292 2.0e-11 74.7 340 24.1
ATR0580G338 Amborella trichopoda HOM05D000464 ORTHO05D006292 1.7e-10 71.6 331 24.8
Migut.D02035 Erythranthe guttata HOM05D000464 ORTHO05D006292 1.7e-10 71.6 345 23.5
Psat5g117120 Pisum sativum HOM05D000464 ORTHO05D006292 2.2e-10 71.2 329 22.2
Cc04_g10820 Coffea canephora HOM05D000464 ORTHO05D006292 4.9e-10 70.1 340 22.6
MBI10_g14637_MAGBIO Magnolia biondii HOM05D000464 ORTHO05D006292 6.4e-10 69.7 340 21.8
COL.COLO4_04956 Corchorus olitorius HOM05D000464 ORTHO05D006292 2.4e-09 67.8 259 24.7
Aqoxy3G01296 Aquilegia oxysepala HOM05D000464 ORTHO05D006292 9.3e-09 65.9 341 22.6
PSO063G1093 Papaver somniferum HOM05D000464 ORTHO05D006292 9.3e-09 65.9 346 19.9
Mapoly0020s0147 Marchantia polymorpha HOM05D006665 ORTHO05D008327 2.1e-08 64.7 345 22.6
Medtr3g075400 Medicago truncatula HOM05D000464 ORTHO05D006292 2.7e-08 64.3 135 29.6
TAR629G1181 Trochodendron aralioides HOM05D000464 ORTHO05D006292 4.6e-08 63.5 150 26.7
AL8G24250 Arabidopsis lyrata HOM05D000464 ORTHO05D006292 1.3e-07 62.0 125 28.0
AT5G50230 Arabidopsis thaliana HOM05D000464 ORTHO05D006292 1.8e-07 61.6 125 27.2
CSS0037820 Camellia sinensis var. sinensis HOM05D000526 ORTHO05D000956 1.8e-07 61.6 237 24.5
Cpa.g.sc1360.1 Carica papaya HOM05D000464 ORTHO05D000408 3.0e-07 60.8 150 26.0
Carub.0008s1023 Capsella rubella HOM05D000464 ORTHO05D006292 3.9e-07 60.5 126 28.6
MELO3C026239.2 Cucumis melo HOM05D000464 ORTHO05D006292 3.9e-07 60.5 146 26.0
CsaV3_1G000870 Cucumis sativus L. HOM05D000464 ORTHO05D006292 3.9e-07 60.5 146 26.0
Thhalv10013321m.g Eutrema salsugineum HOM05D000464 ORTHO05D006292 6.7e-07 59.7 117 27.4
Lsat_1_v5_gn_1_28641 Lactuca sativa HOM05D000464 ORTHO05D006292 8.7e-07 59.3 313 21.7
Lj3g0012644 Lotus japonicus HOM05D000526 ORTHO05D000956 8.7e-07 59.3 245 23.3
FAN07G2584 Fragaria x ananassa HOM05D000002 ORTHO05D006339 1.1e-06 58.9 283 24.4
TPR.G22908 Trifolium pratense HOM05D000464 ORTHO05D006292 1.1e-06 58.9 325 20.9
Aa31LG3G6060 Aethionema arabicum HOM05D000464 ORTHO05D006292 1.5e-06 58.5 117 26.5
AagrBONN_evm.TU.Sc2ySwM_344.121 Anthoceros agrestis HOM05D000464 ORTHO05D006292 2.5e-06 57.8 115 27.8
Lj9A393T56 Lonicera japonica HOM05D000347 ORTHO05D001997 2.5e-06 57.8 174 27.0
HPP92_017571 Vanilla planifolia HOM05D005323 ORTHO05D006820 2.5e-06 57.8 319 22.3
Aa31LG10G4900 Aethionema arabicum HOM05D003769 ORTHO05D004521 3.3e-06 57.4 238 23.9
Cfa023960 Carpinus fangiana HOM05D006430 ORTHO05D007585 3.3e-06 57.4 185 25.9
FAN22G1697 Fragaria x ananassa HOM05D000002 ORTHO05D006339 4.3e-06 57.0 264 24.6
SMO361G0390 Selaginella moellendorffii HOM05D002303 ORTHO05D006504 5.6e-06 56.6 178 24.2
CDE08G0852 Ceratophyllum demersum HOM05D000464 ORTHO05D006292 7.4e-06 56.2 141 25.5
Dinv26878 Davidia involucrata HOM05D002634 ORTHO05D003100 7.4e-06 56.2 214 24.8
FAN17G1253 Fragaria x ananassa HOM05D000002 ORTHO05D006339 7.4e-06 56.2 125 28.0
CARHR079410 Cardamine hirsuta HOM05D000792 ORTHO05D004195 9.6e-06 55.8 230 24.3
Lsat_1_v5_gn_7_78061 Lactuca sativa HOM05D000347 ORTHO05D001997 9.6e-06 55.8 120 26.7
Manes.04G075900 Manihot esculenta HOM05D000347 ORTHO05D001997 9.6e-06 55.8 117 23.9
PGR102G2938 Punica granatum HOM05D000836 ORTHO05D000709 9.6e-06 55.8 128 26.6


User provided reference genes

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