Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.04G064300 Glycine max HOM05D006350 ORTHO05D007850 0.0e+00 1323.9 648 100.0
VMungo1215G2459 Vigna mungo HOM05D006350 ORTHO05D007850 0.0e+00 1166.8 652 87.6
Phvul.002G048900 Phaseolus vulgaris HOM05D006350 ORTHO05D007850 0.0e+00 1166.4 643 88.2
arahy.Tifrunner.gnm1.ann1.SC0FBD Arachis hypogaea HOM05D006350 ORTHO05D007850 1.9e-297 1025.4 656 76.8
Lj1g0012123 Lotus japonicus HOM05D006350 ORTHO05D007850 1.2e-296 1022.7 645 77.7
Ca_07431_v3 Cicer arietinum L. HOM05D006350 ORTHO05D007850 8.0e-296 1020.0 650 77.5
arahy.Tifrunner.gnm1.ann1.QV9JTX Arachis hypogaea HOM05D006350 ORTHO05D007850 9.2e-292 1006.5 696 72.4
Medtr7g050860 Medicago truncatula HOM05D006350 ORTHO05D007850 1.7e-290 1002.3 645 76.7
CiPaw.09G087000 Carya illinoinensis HOM05D006350 ORTHO05D007850 1.2e-275 953.0 649 71.3
Lalb_Chr09g0319631 Lupinus albus HOM05D006350 ORTHO05D007850 1.4e-271 939.5 648 71.6
QL05p075148 Quercus lobata HOM05D006350 ORTHO05D007850 1.5e-270 936.0 666 68.5
QL93p0073_0722 Quercus lobata HOM05D006350 ORTHO05D007850 2.6e-270 935.3 666 68.0
PGR004G2689 Punica granatum HOM05D006350 ORTHO05D007850 1.7e-269 932.6 653 68.9
TPR.G10193 Trifolium pratense HOM05D006350 ORTHO05D007850 1.1e-268 929.9 603 76.8
Ciclev10014587m.g Citrus clementina HOM05D006350 ORTHO05D007850 9.2e-268 926.8 641 70.8
Manes.17G035000 Manihot esculenta HOM05D006350 ORTHO05D007850 5.1e-266 921.0 652 68.4
CANSAT80G1390 Cannabis sativa HOM05D006350 ORTHO05D007850 2.5e-265 918.7 658 68.1
Prupe.4G026100 Prunus persica HOM05D006350 ORTHO05D007850 2.8e-264 915.2 664 69.0
MD10G1314700 Malus domestica HOM05D006350 ORTHO05D007850 3.6e-264 914.8 655 68.7
Eucgr.D00813 Eucalyptus grandis HOM05D006350 ORTHO05D007850 7.6e-262 907.1 644 68.2
Thecc.06G214100 Theobroma cacao HOM05D006350 ORTHO05D007850 2.9e-261 905.2 650 68.5
RcHm_v2.0_Chr5g0003961 Rosa chinensis HOM05D006350 ORTHO05D007850 3.2e-260 901.7 643 67.8
GSVIVG01012630001 Vitis vinifera HOM05D006350 ORTHO05D007850 5.4e-260 901.0 671 67.5
CSS0007285 Camellia sinensis var. sinensis HOM05D006350 ORTHO05D007850 2.7e-259 898.7 651 66.4
CSS0026996 Camellia sinensis var. sinensis HOM05D006350 ORTHO05D007850 6.0e-259 897.5 651 66.4
COL.COLO4_31726 Corchorus olitorius HOM05D006350 ORTHO05D007850 3.0e-258 895.2 647 67.1
FAN21G3377 Fragaria x ananassa HOM05D006350 ORTHO05D007850 8.7e-258 893.6 644 67.5
Gohir.D10G015200 Gossypium hirsutum HOM05D006350 ORTHO05D007850 3.3e-257 891.7 653 68.0
Gorai.011G016800 Gossypium raimondii HOM05D006350 ORTHO05D007850 4.3e-257 891.3 650 67.8
Gohir.A10G015200 Gossypium hirsutum HOM05D006350 ORTHO05D007850 1.6e-256 889.4 648 67.9
FvH4_3g02650 Fragaria vesca HOM05D006350 ORTHO05D007850 1.1e-255 886.7 645 67.1
ClCG01G022180 Citrullus lanatus HOM05D006350 ORTHO05D007850 5.8e-254 880.9 648 66.7
TWI63G1388 Tripterygium wilfordii HOM05D006350 ORTHO05D007850 1.3e-253 879.8 646 65.9
THA.LOC104821036 Tarenaya hassleriana HOM05D006350 ORTHO05D007850 8.4e-253 877.1 645 65.7
Potri.004G022500 Populus trichocarpa HOM05D006350 ORTHO05D007850 2.4e-252 875.5 653 66.9
Rhsim02G0112000 Rhododendron simsii HOM05D006350 ORTHO05D007850 3.2e-252 875.2 654 65.9
TAR629G2651 Trochodendron aralioides HOM05D006350 ORTHO05D007850 1.2e-251 873.2 670 63.0
Dinv20017 Davidia involucrata HOM05D006350 ORTHO05D007850 1.8e-250 869.4 634 67.4
Sopen03g005680 Solanum pennellii HOM05D006350 ORTHO05D007850 1.3e-248 863.2 657 65.4
CsaV3_6G049260 Cucumis sativus L. HOM05D006350 ORTHO05D007850 4.8e-248 861.3 651 65.0
Solyc03g031820.4 Solanum lycopersicum HOM05D006350 ORTHO05D007850 4.0e-247 858.2 657 65.3
AUR62012643 Chenopodium quinoa HOM05D006350 ORTHO05D007850 2.6e-246 855.5 668 63.5
SGA_v2.0_scaffold114G32022 Striga asiatica HOM05D006350 ORTHO05D007850 4.5e-246 854.7 661 63.7
Sp6g28900 Schrenkiella parvula HOM05D006350 ORTHO05D007850 4.9e-245 851.3 644 63.2
Duzib160G0024 Durio zibethinus HOM05D006350 ORTHO05D007850 6.4e-245 850.9 643 65.0
ECA248G2377 Erigeron canadensis HOM05D006350 ORTHO05D007850 6.4e-245 850.9 653 63.9
CAN.G404.6 Capsicum annuum HOM05D006350 ORTHO05D007850 1.9e-244 849.4 658 64.9
DCAR_008125 Daucus carota HOM05D006350 ORTHO05D007850 1.9e-244 849.4 675 62.7
Thhalv10012972m.g Eutrema salsugineum HOM05D006350 ORTHO05D007850 5.5e-244 847.8 646 64.2
MBI02_g10104_MAGBIO Magnolia biondii HOM05D006350 ORTHO05D007850 5.5e-244 847.8 666 62.5
Nitab4.5_0000091g0460 Nicotiana tabacum HOM05D006350 ORTHO05D007850 7.1e-244 847.4 649 65.2
AL6G25990 Arabidopsis lyrata HOM05D006350 ORTHO05D007850 1.2e-243 846.7 645 64.0
HanXRQChr16g0504561 Helianthus annuus HOM05D006350 ORTHO05D007850 1.6e-243 846.3 657 63.6
MSTRG.15966 Avicennia marina HOM05D006350 ORTHO05D007850 4.6e-243 844.7 654 63.8
vmacro15831 Vaccinium macrocarpon HOM05D006350 ORTHO05D007850 2.3e-242 842.4 757 57.9
BolC3t13297H Brassica oleracea HOM05D006350 ORTHO05D007850 3.0e-242 842.0 644 62.7
Atru.chr10.2148 Acer truncatum HOM05D006350 ORTHO05D007850 1.1e-241 840.1 589 69.1
AT5G15170 Arabidopsis thaliana HOM05D006350 ORTHO05D007850 1.9e-241 839.3 645 62.6
Aa31LG11G14390 Aethionema arabicum HOM05D006350 ORTHO05D007850 7.4e-241 837.4 646 63.0
C03p08000 Brassica napus HOM05D006350 ORTHO05D007850 7.4e-241 837.4 644 62.7
A03p07020 Brassica napus HOM05D006350 ORTHO05D007850 1.3e-240 836.6 644 62.9
Nitab4.5_0002613g0020 Nicotiana tabacum HOM05D006350 ORTHO05D007850 2.4e-239 832.4 644 64.8
Sabra04G0012300 Salix brachista HOM05D006350 ORTHO05D007850 1.5e-238 829.7 709 61.4
Peaxi162Scf00521g00815 Petunia axillaris HOM05D006350 ORTHO05D007850 4.5e-238 828.2 628 64.8
Migut.M01281 Erythranthe guttata HOM05D006350 ORTHO05D007850 3.8e-237 825.1 660 61.4
Carub.0006s1334 Capsella rubella HOM05D006350 ORTHO05D007850 1.4e-236 823.2 646 62.5
Psat3g152760 Pisum sativum HOM05D006350 ORTHO05D007850 2.1e-235 819.3 536 76.5
Aqoxy4G01993 Aquilegia oxysepala HOM05D006350 ORTHO05D007850 5.7e-233 811.2 646 61.6
PSO541G3631 Papaver somniferum HOM05D006350 ORTHO05D007850 1.3e-232 810.1 668 60.5
PSO675G5568 Papaver somniferum HOM05D006350 ORTHO05D007850 3.7e-232 808.5 667 60.7
FAN25G1413 Fragaria x ananassa HOM05D006350 ORTHO05D007850 1.3e-226 790.0 646 61.9
EL10Ac8g19892 Beta vulgaris HOM05D006350 ORTHO05D007850 3.3e-225 785.4 660 61.2
BcaB01g05074 Brassica carinata HOM05D006350 ORTHO05D007850 2.2e-224 782.7 649 59.2
Lj1A1225T76 Lonicera japonica HOM05D006350 ORTHO05D007850 1.5e-222 776.5 656 60.1
MELO3C007370.2 Cucumis melo HOM05D006350 ORTHO05D007850 7.7e-222 774.2 550 67.6
Os07g0530100 Oryza sativa ssp. japonica HOM05D006350 ORTHO05D007850 8.5e-221 770.8 670 58.2
Zm00001eb323120 Zea mays HOM05D006350 ORTHO05D007850 6.7e-218 761.1 664 57.1
CARHR198140 Cardamine hirsuta HOM05D006350 ORTHO05D007850 2.6e-217 759.2 588 63.3
Sed0019871 Sechium edule HOM05D006350 ORTHO05D007850 6.3e-216 754.6 488 72.5
Hund23514 Selenicereus undatus HOM05D006350 ORTHO05D007850 5.3e-215 751.5 646 60.8
Sc05g0008900 Simmondsia chinensis HOM05D006350 ORTHO05D007850 5.9e-214 748.0 484 72.9
CDE05G1739 Ceratophyllum demersum HOM05D006350 ORTHO05D007850 7.2e-212 741.1 607 59.8
Haze_08403 Corylus avellana HOM05D006350 ORTHO05D007850 2.9e-205 719.2 519 66.9
ATR0109G008 Amborella trichopoda HOM05D006350 ORTHO05D007850 9.4e-196 687.6 571 58.1
PGSC0003DMG400024073 Solanum tuberosum HOM05D006350 ORTHO05D007850 4.8e-192 675.2 511 64.6
AUR62022012 Chenopodium quinoa HOM05D006350 ORTHO05D007850 2.4e-191 672.9 669 53.1
unitig_748.g7139 Utricularia gibba HOM05D006350 ORTHO05D007850 7.0e-191 671.4 522 61.7
Cc02_g11700 Coffea canephora HOM05D006350 ORTHO05D007850 2.7e-190 669.5 420 75.5
SEGI_36047 Sequoiadendron giganteum HOM05D006350 ORTHO05D007850 4.0e-186 655.6 637 53.1
Cpa.g.sc198.9 Carica papaya HOM05D006350 ORTHO05D007850 3.7e-176 622.5 645 52.7
Lsat_1_v5_gn_1_127601 Lactuca sativa HOM05D006350 ORTHO05D000125 3.2e-175 619.4 522 59.0
Mapoly0129s0047 Marchantia polymorpha HOM05D006350 ORTHO05D007850 6.8e-170 601.7 692 47.1
SMO117G0269 Selaginella moellendorffii HOM05D006350 ORTHO05D007850 5.4e-167 592.0 472 60.2
Dinv17832 Davidia involucrata HOM05D006350 ORTHO05D007850 2.7e-158 563.1 425 64.5
Pp3c10_12100 Physcomitrium patens HOM05D006350 ORTHO05D007850 1.0e-157 561.2 642 47.4
Hund21368 Selenicereus undatus HOM05D006350 ORTHO05D007850 1.6e-150 537.3 329 75.1
Oeu051224.2 Olea europaea HOM05D006350 ORTHO05D007850 4.4e-145 519.2 675 45.6
Nn1g03636 Nelumbo nucifera HOM05D006350 ORTHO05D007850 3.4e-121 439.9 648 41.5
Hund21371 Selenicereus undatus HOM05D006350 ORTHO05D007850 1.2e-118 431.4 281 71.2
Eucgr.L01729 Eucalyptus grandis HOM05D006350 ORTHO05D007850 1.9e-108 397.5 453 48.6
MBI04_g30799_MAGBIO Magnolia biondii HOM05D006350 ORTHO05D007850 3.7e-91 340.1 358 51.7
HPP92_017615 Vanilla planifolia HOM05D006350 ORTHO05D007850 2.5e-87 327.4 204 74.0
VMungo1383G3417 Vigna mungo HOM05D006350 ORTHO05D007850 8.8e-85 318.9 175 86.3
MCO12G349 Micromonas commoda HOM05D006350 ORTHO05D007850 4.8e-83 313.2 507 36.9
PRCOL_00001871 Prasinoderma coloniale HOM05D006350 ORTHO05D007850 1.7e-75 288.1 459 37.9
Dinv17831 Davidia involucrata HOM05D006350 ORTHO05D007850 6.3e-75 286.2 194 75.3
VMungo0251G1161 Vigna mungo HOM05D006350 ORTHO05D007850 3.7e-67 260.4 128 93.0
Cre01.g053200 Chlamydomonas reinhardtii HOM05D006350 ORTHO05D007850 1.2e-60 238.8 553 30.7
SMO172G0198 Selaginella moellendorffii HOM05D006350 ORTHO05D007850 6.4e-59 233.0 318 42.8
Cc02_g11710 Coffea canephora HOM05D006350 ORTHO05D007850 5.8e-52 209.9 242 47.9
HPP92_017616 Vanilla planifolia HOM05D006350 ORTHO05D007850 4.9e-43 180.3 269 40.1
CBR_g28581 Chara braunii HOM05D000019 ORTHO05D000048 1.6e-30 138.7 133 54.9
Sc05g0008890 Simmondsia chinensis HOM05D006350 ORTHO05D007850 2.0e-28 131.7 156 50.6
SMO198G0039 Selaginella moellendorffii HOM05D006350 ORTHO05D007850 1.3e-27 129.0 148 44.6
Nn1g00065 Nelumbo nucifera HOM05D006350 ORTHO05D007850 1.9e-26 125.2 143 45.5
Cfa024753 Carpinus fangiana HOM05D006350 ORTHO05D007850 1.9e-23 115.2 613 23.0
HPP92_017614 Vanilla planifolia HOM05D006350 ORTHO05D007850 4.6e-17 94.0 83 54.2
unitig_748.g7138 Utricularia gibba HOM05D006350 ORTHO05D007850 7.9e-17 93.2 106 48.1
arahy.Tifrunner.gnm1.ann1.PQF71L Arachis hypogaea HOM05D004293 ORTHO05D007850 2.3e-16 91.7 66 72.7
C03p17100 Brassica napus HOM05D006350 ORTHO05D007850 2.0e-12 78.6 64 60.9
BolC3t14124H Brassica oleracea HOM05D006350 ORTHO05D007850 2.0e-12 78.6 58 65.5
Nn1g07027 Nelumbo nucifera HOM05D006350 ORTHO05D007850 4.5e-12 77.4 65 52.3
THA.LOC104818293 Tarenaya hassleriana HOM05D007034 ORTHO05D008665 9.3e-10 69.7 323 28.2
HPP92_006434 Vanilla planifolia HOM05D007034 ORTHO05D008665 9.3e-10 69.7 203 29.1
BcaC03g13189 Brassica carinata HOM05D007034 ORTHO05D008665 4.6e-09 67.4 320 26.2
BolC2t06271H Brassica oleracea HOM05D007034 ORTHO05D008665 4.6e-09 67.4 320 26.2
AUR62029782 Chenopodium quinoa HOM05D007034 ORTHO05D008665 6.0e-09 67.0 203 29.6
Nn1g07028 Nelumbo nucifera HOM05D006350 ORTHO05D007850 7.9e-09 66.6 76 46.1
Prupe.5G138100 Prunus persica HOM05D007034 ORTHO05D008665 1.0e-08 66.2 196 27.0
MBI11_g45190_MAGBIO Magnolia biondii HOM05D007034 ORTHO05D008665 1.3e-08 65.9 194 29.4
Ca_16833_v3 Cicer arietinum L. HOM05D007034 ORTHO05D008665 1.8e-08 65.5 330 25.2
PSO017G2510 Papaver somniferum HOM05D007034 ORTHO05D008665 2.3e-08 65.1 196 25.5
Ah.15g089920 Amaranthus hybridus HOM05D007034 ORTHO05D008665 3.0e-08 64.7 242 24.8
Aqoxy5G02954 Aquilegia oxysepala HOM05D007034 ORTHO05D008665 3.0e-08 64.7 192 28.1
Cfa024022 Carpinus fangiana HOM05D006350 ORTHO05D007850 3.0e-08 64.7 238 25.2
EL10Ac7g17117 Beta vulgaris HOM05D007034 ORTHO05D008665 3.9e-08 64.3 312 24.4
Ciclev10030559m.g Citrus clementina HOM05D007034 ORTHO05D008665 5.1e-08 63.9 193 29.5
Pp3c20_13830 Physcomitrium patens HOM05D006350 ORTHO05D007850 5.1e-08 63.9 111 37.8
BcaB05g21619 Brassica carinata HOM05D007034 ORTHO05D008665 6.7e-08 63.5 291 26.1
C02p03100 Brassica napus HOM05D007034 ORTHO05D008665 8.7e-08 63.2 333 24.9
PSO017G4759 Papaver somniferum HOM05D007034 ORTHO05D008665 8.7e-08 63.2 191 26.7
GSVIVG01014061001 Vitis vinifera HOM05D007034 ORTHO05D008665 8.7e-08 63.2 191 26.2
arahy.Tifrunner.gnm1.ann1.FYEN8G Arachis hypogaea HOM05D007034 ORTHO05D008665 3.3e-07 61.2 197 23.9
QL10p035731 Quercus lobata HOM05D007034 ORTHO05D008665 5.6e-07 60.5 192 27.1
Potri.012G111800 Populus trichocarpa HOM05D007034 ORTHO05D008665 7.4e-07 60.1 126 32.5
HanXRQChr05g0154511 Helianthus annuus HOM05D007034 ORTHO05D008665 9.6e-07 59.7 204 25.5
CBR_g36305 Chara braunii HOM05D007034 ORTHO05D008665 1.3e-06 59.3 218 27.5
RcHm_v2.0_Chr7g0188231 Rosa chinensis HOM05D007034 ORTHO05D008665 2.1e-06 58.5 120 34.2
ATR0582G190 Amborella trichopoda HOM05D007034 ORTHO05D008665 2.8e-06 58.2 127 29.1
Psat7g040600 Pisum sativum HOM05D007034 ORTHO05D008665 2.8e-06 58.2 191 25.1
Sc10g0005150 Simmondsia chinensis HOM05D007034 ORTHO05D008665 2.8e-06 58.2 126 31.0
Duzib205G0091 Durio zibethinus HOM05D007034 ORTHO05D008665 3.7e-06 57.8 121 28.1
SMO139G0138 Selaginella moellendorffii HOM05D007034 ORTHO05D008665 3.7e-06 57.8 206 23.3
Manes.06G128800 Manihot esculenta HOM05D007034 ORTHO05D008665 4.8e-06 57.4 123 33.3
Zm00001eb084530 Zea mays HOM05D007034 ORTHO05D008665 4.8e-06 57.4 195 26.7
VMungo0251G1097 Vigna mungo HOM05D007034 ORTHO05D008665 8.2e-06 56.6 198 25.8


User provided reference genes

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