Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.04G045700 Glycine max HOM05D006776 ORTHO05D007603 2.2e-260 901.7 451 100.0
Glyma.06G046400 Glycine max HOM05D006776 ORTHO05D007603 2.0e-245 852.0 452 93.8
VMungo1309G0963 Vigna mungo HOM05D006776 ORTHO05D007603 2.7e-234 815.1 447 90.2
Phvul.009G071700 Phaseolus vulgaris HOM05D006776 ORTHO05D007603 2.6e-229 798.5 451 88.0
Lj1g0026753 Lotus japonicus HOM05D006776 ORTHO05D007603 6.7e-225 783.9 444 86.0
Lalb_Chr11g0062871 Lupinus albus HOM05D006776 ORTHO05D007603 1.1e-219 766.5 443 84.7
Ca_15900_v3 Cicer arietinum L. HOM05D006776 ORTHO05D007603 1.4e-214 749.6 445 82.9
TPR.G33723 Trifolium pratense HOM05D006776 ORTHO05D007603 1.4e-214 749.6 443 82.6
Medtr3g103170 Medicago truncatula HOM05D006776 ORTHO05D007603 1.8e-214 749.2 443 82.4
Psat5g038960 Pisum sativum HOM05D006776 ORTHO05D007603 4.1e-214 748.0 445 82.5
arahy.Tifrunner.gnm1.ann1.YEFH3D Arachis hypogaea HOM05D006776 ORTHO05D007603 3.0e-209 731.9 456 78.5
arahy.Tifrunner.gnm1.ann1.SBJ000 Arachis hypogaea HOM05D006776 ORTHO05D007603 3.7e-207 724.9 453 77.9
RcHm_v2.0_Chr6g0309581 Rosa chinensis HOM05D006776 ORTHO05D007603 4.9e-199 698.0 454 75.6
MD15G1070100 Malus domestica HOM05D006776 ORTHO05D007603 9.2e-198 693.7 454 74.2
CiPaw.07G175000 Carya illinoinensis HOM05D006776 ORTHO05D007603 3.5e-197 691.8 446 76.2
Prupe.1G422900 Prunus persica HOM05D006776 ORTHO05D007603 5.9e-197 691.0 451 75.4
FAN20G0940 Fragaria x ananassa HOM05D006776 ORTHO05D007603 5.6e-195 684.5 454 74.2
Manes.05G181900 Manihot esculenta HOM05D006776 ORTHO05D007603 5.6e-195 684.5 458 73.8
FAN15G0723 Fragaria x ananassa HOM05D006776 ORTHO05D007603 7.3e-195 684.1 454 74.2
FAN27G1522 Fragaria x ananassa HOM05D006776 ORTHO05D007603 9.5e-195 683.7 454 74.0
CANSAT21G2159 Cannabis sativa HOM05D006776 ORTHO05D007603 1.2e-194 683.3 454 74.2
FvH4_2g33100 Fragaria vesca HOM05D006776 ORTHO05D007603 1.2e-194 683.3 454 74.2
FAN24G3456 Fragaria x ananassa HOM05D006776 ORTHO05D007603 1.8e-193 679.5 454 73.6
Dinv39223 Davidia involucrata HOM05D006776 ORTHO05D007603 5.2e-193 677.9 463 72.4
Atru.chr13.832 Acer truncatum HOM05D006776 ORTHO05D007603 8.9e-193 677.2 440 74.5
CSS0038791 Camellia sinensis var. sinensis HOM05D006776 ORTHO05D007603 1.2e-192 676.8 458 72.5
Thecc.08G088800 Theobroma cacao HOM05D006776 ORTHO05D007603 5.8e-192 674.5 455 73.4
Ciclev10001152m.g Citrus clementina HOM05D006776 ORTHO05D007603 1.7e-191 672.9 451 73.4
QL12p038088 Quercus lobata HOM05D006776 ORTHO05D007603 2.9e-191 672.2 489 69.3
Actinidia08248 Actinidia chinensis HOM05D006776 ORTHO05D007603 1.8e-190 669.5 463 70.8
Potri.014G016100 Populus trichocarpa HOM05D006776 ORTHO05D007603 1.2e-189 666.8 454 72.2
GSVIVG01009344001 Vitis vinifera HOM05D006776 ORTHO05D007603 3.5e-189 665.2 463 72.1
COL.COLO4_28506 Corchorus olitorius HOM05D006776 ORTHO05D007603 7.8e-189 664.1 455 71.0
CsaV3_2G026140 Cucumis sativus L. HOM05D006776 ORTHO05D007603 1.1e-187 660.2 454 71.4
Gohir.D05G213300 Gossypium hirsutum HOM05D006776 ORTHO05D007603 1.1e-187 660.2 455 71.9
Rhsim07G0219900 Rhododendron simsii HOM05D006776 ORTHO05D007603 5.6e-187 657.9 463 69.1
Gohir.A05G210000 Gossypium hirsutum HOM05D006776 ORTHO05D007603 9.5e-187 657.1 455 71.4
TAR376G1186 Trochodendron aralioides HOM05D006776 ORTHO05D007603 3.6e-186 655.2 461 71.4
Cpa.g.sc142.25 Carica papaya HOM05D006776 ORTHO05D007603 1.8e-185 652.9 441 72.6
MELO3C010806.2 Cucumis melo HOM05D006776 ORTHO05D007603 3.1e-185 652.1 460 70.4
Hma1.2p1_0819F.1_g223710 Hydrangea macrophylla HOM05D006776 ORTHO05D007603 4.0e-185 651.7 434 73.7
PGR083G0271 Punica granatum HOM05D006776 ORTHO05D007603 4.4e-184 648.3 454 71.1
EL10Ac1g02384 Beta vulgaris HOM05D006776 ORTHO05D007603 2.2e-183 646.0 462 69.0
ClCG08G016470 Citrullus lanatus HOM05D006776 ORTHO05D007603 2.2e-183 646.0 445 71.0
Cc10_g05780 Coffea canephora HOM05D006776 ORTHO05D007603 4.9e-183 644.8 462 69.9
Sed0026542 Sechium edule HOM05D006776 ORTHO05D007603 4.9e-183 644.8 439 71.5
ECA232G1156 Erigeron canadensis HOM05D006776 ORTHO05D007603 6.4e-183 644.4 452 70.6
Cfa013778 Carpinus fangiana HOM05D006776 ORTHO05D007603 1.4e-182 643.3 455 71.6
PGSC0003DMG400011544 Solanum tuberosum HOM05D006776 ORTHO05D007603 9.2e-182 640.6 459 70.6
Lsat_1_v5_gn_4_131640 Lactuca sativa HOM05D006776 ORTHO05D007603 2.7e-181 639.0 465 69.7
Eucgr.F00083 Eucalyptus grandis HOM05D006776 ORTHO05D007603 1.3e-180 636.7 453 69.1
Hund23872 Selenicereus undatus HOM05D006776 ORTHO05D007603 1.5e-179 633.3 461 68.8
MSTRG.22221 Avicennia marina HOM05D006776 ORTHO05D007603 5.6e-179 631.3 457 67.4
HanXRQChr09g0266761 Helianthus annuus HOM05D006776 ORTHO05D007603 5.6e-179 631.3 453 69.1
Solyc12g088340.2 Solanum lycopersicum HOM05D006776 ORTHO05D007603 1.6e-178 629.8 459 69.3
Oeu053611.1 Olea europaea HOM05D006776 ORTHO05D007603 3.6e-178 628.6 461 67.0
Sopen12g030330 Solanum pennellii HOM05D006776 ORTHO05D007603 4.7e-178 628.2 459 69.1
Aqoxy5G00870 Aquilegia oxysepala HOM05D006776 ORTHO05D007603 1.1e-177 627.1 459 68.2
Nitab4.5_0002314g0100 Nicotiana tabacum HOM05D006776 ORTHO05D007603 1.4e-177 626.7 459 69.3
Sabra14G0010000 Salix brachista HOM05D006776 ORTHO05D007603 1.4e-177 626.7 458 68.6
TWI56G0429 Tripterygium wilfordii HOM05D006776 ORTHO05D007603 1.4e-177 626.7 448 69.9
Ah.11g042830 Amaranthus hybridus HOM05D006776 ORTHO05D007603 1.8e-177 626.3 461 66.6
Nitab4.5_0008551g0030 Nicotiana tabacum HOM05D006776 ORTHO05D007603 2.3e-177 625.9 441 71.0
PSO017G0681 Papaver somniferum HOM05D006776 ORTHO05D007603 2.3e-177 625.9 459 68.2
DCAR_012816 Daucus carota HOM05D006776 ORTHO05D007603 5.2e-177 624.8 455 67.7
PSO170G0170 Papaver somniferum HOM05D006776 ORTHO05D007603 2.0e-176 622.9 459 68.0
THA.LOC104814190 Tarenaya hassleriana HOM05D006776 ORTHO05D007603 3.4e-176 622.1 459 68.8
AL1G41330 Arabidopsis lyrata HOM05D006776 ORTHO05D007603 1.7e-175 619.8 455 67.0
AT1G27840 Arabidopsis thaliana HOM05D006776 ORTHO05D007603 4.9e-175 618.2 455 67.3
Nn1g04555 Nelumbo nucifera HOM05D006776 ORTHO05D007603 4.9e-175 618.2 461 66.6
Migut.N02781 Erythranthe guttata HOM05D006776 ORTHO05D007603 2.4e-174 615.9 462 66.0
Lj4A758G74 Lonicera japonica HOM05D006776 ORTHO05D007603 3.5e-173 612.1 422 71.3
SGA_v2.0_scaffold152G36804 Striga asiatica HOM05D006776 ORTHO05D007603 7.8e-173 610.9 516 60.1
Gorai.009G219900 Gossypium raimondii HOM05D006776 ORTHO05D007603 1.7e-172 609.8 417 72.7
CARHR027300 Cardamine hirsuta HOM05D006776 ORTHO05D007603 3.9e-172 608.6 454 67.0
Haze_22436 Corylus avellana HOM05D006776 ORTHO05D007603 6.6e-172 607.8 406 74.9
Sp1g24040 Schrenkiella parvula HOM05D006776 ORTHO05D007603 3.3e-171 605.5 455 66.4
C05p26470 Brassica napus HOM05D006776 ORTHO05D007603 1.5e-168 596.7 455 66.2
BolC5t31368H Brassica oleracea HOM05D006776 ORTHO05D007603 1.5e-168 596.7 455 66.4
BcaNung06155 Brassica carinata HOM05D006776 ORTHO05D007603 2.0e-168 596.3 455 66.2
A09p38320 Brassica napus HOM05D006776 ORTHO05D007603 2.9e-167 592.4 455 65.5
BraA09t39342Z Brassica rapa HOM05D006776 ORTHO05D007603 1.1e-166 590.5 456 65.4
HPP92_001976 Vanilla planifolia HOM05D006776 ORTHO05D007603 1.4e-166 590.1 456 63.8
Sc15g0005690 Simmondsia chinensis HOM05D006776 ORTHO05D007603 7.1e-166 587.8 413 70.0
ATR0820G216 Amborella trichopoda HOM05D006776 ORTHO05D007603 1.7e-164 583.2 458 62.4
Peaxi162Scf00160g00527 Petunia axillaris HOM05D006776 ORTHO05D007603 1.1e-163 580.5 440 68.9
Aa31sc113G60 Aethionema arabicum HOM05D006776 ORTHO05D007603 1.6e-162 576.6 492 61.8
unitig_578.g16149 Utricularia gibba HOM05D006776 ORTHO05D007603 2.8e-162 575.9 453 64.5
BcaNung06153 Brassica carinata HOM05D006776 ORTHO05D007603 5.2e-161 571.6 447 66.0
Thhalv10007615m.g Eutrema salsugineum HOM05D006776 ORTHO05D007603 9.0e-161 570.9 452 64.2
CDE04G2973 Ceratophyllum demersum HOM05D006776 ORTHO05D007603 2.2e-159 566.2 459 62.1
Hma1.2p1_0819F.1_g223700 Hydrangea macrophylla HOM05D006776 ORTHO05D007603 2.2e-159 566.2 389 72.8
Duzib116G0586 Durio zibethinus HOM05D006776 ORTHO05D007603 4.9e-159 565.1 387 72.9
Zm00001eb147340 Zea mays HOM05D006776 ORTHO05D007603 1.7e-156 556.6 450 60.4
AUR62038776 Chenopodium quinoa HOM05D006776 ORTHO05D007603 8.7e-156 554.3 401 67.8
vmacro22055 Vaccinium macrocarpon HOM05D006776 ORTHO05D007603 5.5e-142 508.4 372 67.2
Pp3c22_5850 Physcomitrium patens HOM05D006776 ORTHO05D007603 3.1e-129 466.1 461 49.9
MD08G1082700 Malus domestica HOM05D006776 ORTHO05D007603 4.1e-129 465.7 378 64.3
Mapoly0043s0035 Marchantia polymorpha HOM05D006776 ORTHO05D007603 2.1e-125 453.4 469 49.9
AT1G19750 Arabidopsis thaliana HOM05D006776 ORTHO05D007603 5.7e-123 445.3 335 67.2
BcaC05g26777 Brassica carinata HOM05D006776 ORTHO05D007603 2.2e-119 433.3 459 53.8
AagrBONN_evm.TU.Sc2ySwM_228.2971 Anthoceros agrestis HOM05D006776 ORTHO05D007603 9.4e-118 427.9 455 48.6
SMO203G0215 Selaginella moellendorffii HOM05D006776 ORTHO05D007603 2.3e-116 423.3 449 47.7
AUR62037473 Chenopodium quinoa HOM05D006776 ORTHO05D007603 1.7e-114 417.2 294 69.4
Carub.0001s2630 Capsella rubella HOM05D006776 ORTHO05D007603 5.9e-112 408.7 308 65.6
CBR_g4873 Chara braunii HOM05D006776 ORTHO05D007603 9.7e-99 364.8 550 38.7
CDE02G3909 Ceratophyllum demersum HOM05D006776 ORTHO05D007603 4.7e-93 345.9 387 48.3
SMO353G0131 Selaginella moellendorffii HOM05D006776 ORTHO05D007603 4.5e-88 329.3 456 41.0
MD08G1084000 Malus domestica HOM05D006776 ORTHO05D007603 6.8e-84 315.5 241 67.6
SEGI_38356 Sequoiadendron giganteum HOM05D006776 ORTHO05D007603 2.5e-70 270.4 201 62.2
SEGI_36074 Sequoiadendron giganteum HOM05D006776 ORTHO05D007603 3.6e-69 266.5 221 58.8
MCO02G266 Micromonas commoda HOM05D006776 ORTHO05D007603 1.9e-65 254.2 452 34.5
Os02g0307200 Oryza sativa ssp. japonica HOM05D006776 ORTHO05D007603 2.8e-61 240.4 190 61.6
Cre01.g032100 Chlamydomonas reinhardtii HOM05D006776 ORTHO05D007603 3.5e-40 170.2 290 35.9
PRCOL_00002749 Prasinoderma coloniale HOM05D006776 ORTHO05D007603 1.2e-35 155.2 456 28.3
Lsat_1_v5_gn_7_88960 Lactuca sativa HOM05D006776 ORTHO05D007603 5.4e-33 146.4 111 64.9
Cre01.g032139 Chlamydomonas reinhardtii HOM05D006776 ORTHO05D007603 1.6e-16 91.7 127 33.9
HanXRQChr04g0100971 Helianthus annuus HOM05D000464 ORTHO05D006292 2.2e-10 71.2 317 22.7
Cc04_g10820 Coffea canephora HOM05D000464 ORTHO05D006292 6.5e-10 69.7 331 22.7
SGA_v2.0_scaffold7G04174 Striga asiatica HOM05D000464 ORTHO05D006292 1.4e-09 68.6 300 23.0
ATR0580G338 Amborella trichopoda HOM05D000464 ORTHO05D006292 1.2e-08 65.5 326 23.6
MBI10_g14637_MAGBIO Magnolia biondii HOM05D000464 ORTHO05D006292 2.7e-08 64.3 322 21.1
MELO3C026239.2 Cucumis melo HOM05D000464 ORTHO05D006292 3.6e-08 63.9 137 27.7
CsaV3_1G000870 Cucumis sativus L. HOM05D000464 ORTHO05D006292 3.6e-08 63.9 137 27.7
Migut.D02035 Erythranthe guttata HOM05D000464 ORTHO05D006292 4.6e-08 63.5 314 21.7
COL.COLO4_04956 Corchorus olitorius HOM05D000464 ORTHO05D006292 6.1e-08 63.2 117 28.2
Medtr3g075400 Medicago truncatula HOM05D000464 ORTHO05D006292 6.1e-08 63.2 135 28.9
Psat5g117120 Pisum sativum HOM05D000464 ORTHO05D006292 1.0e-07 62.4 135 28.1
HPP92_017571 Vanilla planifolia HOM05D005323 ORTHO05D006820 1.0e-07 62.4 322 23.3
AL8G24250 Arabidopsis lyrata HOM05D000464 ORTHO05D006292 2.3e-07 61.2 117 27.4
AT5G50230 Arabidopsis thaliana HOM05D000464 ORTHO05D006292 2.3e-07 61.2 117 27.4
CSS0037820 Camellia sinensis var. sinensis HOM05D000526 ORTHO05D000956 2.3e-07 61.2 237 23.2
Lj3g0012644 Lotus japonicus HOM05D000526 ORTHO05D000956 3.0e-07 60.8 239 23.8
TAR629G1181 Trochodendron aralioides HOM05D000464 ORTHO05D006292 3.9e-07 60.5 121 25.6
Thhalv10013321m.g Eutrema salsugineum HOM05D000464 ORTHO05D006292 5.1e-07 60.1 117 27.4
AagrBONN_evm.TU.Sc2ySwM_344.121 Anthoceros agrestis HOM05D000464 ORTHO05D006292 6.7e-07 59.7 115 28.7
Carub.0008s1023 Capsella rubella HOM05D000464 ORTHO05D006292 6.7e-07 59.7 118 28.0
Dinv26878 Davidia involucrata HOM05D002634 ORTHO05D003100 8.8e-07 59.3 214 26.2
Mapoly0020s0147 Marchantia polymorpha HOM05D006665 ORTHO05D008327 8.8e-07 59.3 349 23.2
Aa31LG3G6060 Aethionema arabicum HOM05D000464 ORTHO05D006292 1.1e-06 58.9 117 26.5
PSO063G1093 Papaver somniferum HOM05D000464 ORTHO05D006292 1.1e-06 58.9 315 19.7
Cpa.g.sc1360.1 Carica papaya HOM05D000464 ORTHO05D000408 1.5e-06 58.5 121 26.4
HPP92_025390 Vanilla planifolia HOM05D006183 ORTHO05D007844 2.5e-06 57.8 260 23.8
Lsat_1_v5_gn_7_78061 Lactuca sativa HOM05D000347 ORTHO05D001997 3.3e-06 57.4 131 26.0
Manes.04G075900 Manihot esculenta HOM05D000347 ORTHO05D001997 4.3e-06 57.0 128 23.4
FAN22G1697 Fragaria x ananassa HOM05D000002 ORTHO05D006339 5.7e-06 56.6 264 23.9
Zm00001eb222270 Zea mays HOM05D006183 ORTHO05D007844 5.7e-06 56.6 341 21.7
Os10g0464100 Oryza sativa ssp. japonica HOM05D006183 ORTHO05D007844 7.4e-06 56.2 260 23.8
FAN07G2584 Fragaria x ananassa HOM05D000002 ORTHO05D006339 9.7e-06 55.8 292 23.3
PGR102G2938 Punica granatum HOM05D000836 ORTHO05D000709 9.7e-06 55.8 133 28.6


User provided reference genes

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