Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.03G252000 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1373.6 708 100.0
Glyma.19G249400 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1360.1 708 98.6
Phvul.006G106700 Phaseolus vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1336.2 708 97.0
VMungo0540G0979 Vigna mungo HOM05D004330 ORTHO05D005182 0.0e+00 1324.7 708 96.2
Lalb_Chr04g0261991 Lupinus albus HOM05D004330 ORTHO05D005182 0.0e+00 1270.4 705 92.5
Lj5g0027584 Lotus japonicus HOM05D004330 ORTHO05D005182 0.0e+00 1263.1 709 91.8
arahy.Tifrunner.gnm1.ann1.7LJM3H Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1243.4 709 90.6
arahy.Tifrunner.gnm1.ann1.A4ASB6 Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1243.4 709 90.6
arahy.Tifrunner.gnm1.ann1.KU2W2N Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1243.4 709 90.6
Medtr1g079770 Medicago truncatula HOM05D004330 ORTHO05D005182 0.0e+00 1240.7 709 90.6
Actinidia16901 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1232.6 708 88.0
Dinv22060 Davidia involucrata HOM05D004330 ORTHO05D005182 0.0e+00 1231.9 708 89.1
Cfa008036 Carpinus fangiana HOM05D004330 ORTHO05D005182 0.0e+00 1230.7 708 88.8
Ca_09987_v3 Cicer arietinum L. HOM05D004330 ORTHO05D005182 0.0e+00 1230.3 708 90.0
Cpa.g.sc249.10 Carica papaya HOM05D004330 ORTHO05D005182 0.0e+00 1227.2 697 89.2
Psat6g142240 Pisum sativum HOM05D004330 ORTHO05D005182 0.0e+00 1224.2 708 89.3
Actinidia29358 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1223.4 708 87.9
RcHm_v2.0_Chr6g0249411 Rosa chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1218.8 701 88.6
TPR.G10262 Trifolium pratense HOM05D004330 ORTHO05D005182 0.0e+00 1218.8 709 89.6
CiPaw.03G012300 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1217.6 704 87.9
GSVIVG01012102001 Vitis vinifera HOM05D004330 ORTHO05D005182 0.0e+00 1216.8 708 87.3
Prupe.1G566400 Prunus persica HOM05D004330 ORTHO05D005182 0.0e+00 1215.7 708 87.7
Ciclev10019077m.g Citrus clementina HOM05D004330 ORTHO05D005182 0.0e+00 1213.7 708 87.6
MD15G1440000 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1209.5 693 88.9
CSS0001083 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1208.0 708 86.9
Thecc.08G188100 Theobroma cacao HOM05D004330 ORTHO05D005182 0.0e+00 1201.8 708 86.7
Manes.15G103100 Manihot esculenta HOM05D004330 ORTHO05D005182 0.0e+00 1201.0 688 88.7
MD08G1244900 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1200.7 693 88.5
QL09p001201 Quercus lobata HOM05D004330 ORTHO05D005182 0.0e+00 1200.3 705 87.5
FvH4_2g00140 Fragaria vesca HOM05D004330 ORTHO05D005182 0.0e+00 1199.5 701 87.4
CANSAT01G1169 Cannabis sativa HOM05D004330 ORTHO05D005182 0.0e+00 1198.0 708 85.7
CiPaw.04G008600 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1193.7 708 87.0
FAN24G1765 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1193.7 701 87.4
Hma1.2p1_0016F.1_g011010 Hydrangea macrophylla HOM05D004330 ORTHO05D005182 0.0e+00 1192.9 708 86.2
Eucgr.C04264 Eucalyptus grandis HOM05D004330 ORTHO05D005182 0.0e+00 1189.5 697 86.7
Nn6g32085 Nelumbo nucifera HOM05D004330 ORTHO05D005182 0.0e+00 1186.4 700 85.6
PGR031G1280 Punica granatum HOM05D004330 ORTHO05D005182 0.0e+00 1183.7 708 85.0
Sabra06G0020300 Salix brachista HOM05D004330 ORTHO05D005182 0.0e+00 1181.4 707 85.3
CsaV3_2G033380 Cucumis sativus L. HOM05D004330 ORTHO05D005182 0.0e+00 1179.9 708 85.3
Potri.006G027100 Populus trichocarpa HOM05D004330 ORTHO05D005182 0.0e+00 1179.9 694 86.9
Gorai.009G264800 Gossypium raimondii HOM05D004330 ORTHO05D005182 0.0e+00 1178.3 691 86.3
Gohir.D05G252400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1177.2 691 86.1
Gohir.A05G251400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1176.8 691 86.1
vmacro06107 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 0.0e+00 1173.7 736 82.1
Rhsim01G0101300 Rhododendron simsii HOM05D004330 ORTHO05D005182 0.0e+00 1170.6 719 83.7
Aqoxy5G00868 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 0.0e+00 1168.7 695 84.3
MELO3C008109.2 Cucumis melo HOM05D004330 ORTHO05D005182 0.0e+00 1168.7 726 83.1
TWI12G0377 Tripterygium wilfordii HOM05D004330 ORTHO05D005182 0.0e+00 1168.7 735 82.9
BcaC08g46563 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1168.3 697 84.1
C06p45370 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1168.3 697 84.1
Sp5g26470 Schrenkiella parvula HOM05D004330 ORTHO05D005182 0.0e+00 1168.3 706 83.1
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 0.0e+00 1168.3 671 88.4
FAN19G3045 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1167.1 698 86.1
Sed0024292 Sechium edule HOM05D004330 ORTHO05D005182 0.0e+00 1167.1 708 84.9
HanXRQChr05g0150611 Helianthus annuus HOM05D004330 ORTHO05D005182 0.0e+00 1165.6 697 84.2
CSS0008451 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1165.2 714 83.9
Nitab4.5_0000079g0120 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1165.2 708 83.3
A07p37610 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1164.4 697 83.9
AT1G71270 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 0.0e+00 1163.7 708 82.8
BcaB03g14885 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1163.7 697 84.1
BolC6t39595H Brassica oleracea HOM05D004330 ORTHO05D005182 0.0e+00 1163.7 697 83.8
DCAR_024855 Daucus carota HOM05D004330 ORTHO05D005182 0.0e+00 1163.3 731 82.4
BraA07t31323Z Brassica rapa HOM05D004330 ORTHO05D005182 0.0e+00 1161.7 698 84.0
AL2G30885 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 0.0e+00 1161.0 708 82.6
Carub.0002s1815 Capsella rubella HOM05D004330 ORTHO05D005182 0.0e+00 1160.2 708 82.3
ClCG11G008260 Citrullus lanatus HOM05D004330 ORTHO05D005182 0.0e+00 1159.1 710 84.4
Nitab4.5_0007117g0020 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1154.8 694 84.0
PSO210G1668 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1152.5 685 85.1
PSO761G0081 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1150.6 685 85.0
Solyc02g094090.4 Solanum lycopersicum HOM05D004330 ORTHO05D005182 0.0e+00 1150.2 708 82.5
Sopen02g038710 Solanum pennellii HOM05D004330 ORTHO05D005182 0.0e+00 1149.4 693 83.5
Peaxi162Scf00078g01141 Petunia axillaris HOM05D004330 ORTHO05D005182 0.0e+00 1146.3 722 81.0
Cc10_g16170 Coffea canephora HOM05D004330 ORTHO05D005182 0.0e+00 1144.8 689 84.9
Sc17g0000550 Simmondsia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1144.8 709 82.4
Lj7C415G17 Lonicera japonica HOM05D004330 ORTHO05D005182 0.0e+00 1144.4 708 82.8
THA.LOC104803377 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 0.0e+00 1144.4 696 82.9
ATR0580G447 Amborella trichopoda HOM05D004330 ORTHO05D005182 0.0e+00 1141.7 698 82.5
Duzib177G1138 Durio zibethinus HOM05D004330 ORTHO05D005182 0.0e+00 1140.6 708 83.5
ECA246G0284 Erigeron canadensis HOM05D004330 ORTHO05D005182 0.0e+00 1139.0 708 81.4
Migut.G00904 Erythranthe guttata HOM05D004330 ORTHO05D005182 0.0e+00 1137.9 694 82.9
CAN.G473.93 Capsicum annuum HOM05D004330 ORTHO05D005182 0.0e+00 1136.7 691 83.2
Thhalv10018205m.g Eutrema salsugineum HOM05D004330 ORTHO05D005182 0.0e+00 1136.7 708 81.1
SalBow6G7193 Salvia bowleyana HOM05D004330 ORTHO05D005182 0.0e+00 1132.5 740 78.1
Ah.11g049400 Amaranthus hybridus HOM05D004330 ORTHO05D005182 0.0e+00 1124.4 707 80.9
AUR62024682 Chenopodium quinoa HOM05D004330 ORTHO05D005182 0.0e+00 1122.1 690 82.2
MSTRG.22475 Avicennia marina HOM05D004330 ORTHO05D005182 0.0e+00 1120.1 668 84.4
THA.LOC104823378 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 0.0e+00 1119.4 696 82.0
EL10As5g23498 Beta vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1111.7 686 82.7
Oeu020638.1 Olea europaea HOM05D004330 ORTHO05D005182 0.0e+00 1111.3 783 74.6
Aa31LG4G9240 Aethionema arabicum HOM05D004330 ORTHO05D005182 0.0e+00 1110.5 750 77.2
Nitab4.5_0007150g0080 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1097.8 720 78.8
Os03g0417900 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 0.0e+00 1095.5 701 78.0
Lsat_1_v5_gn_6_109860 Lactuca sativa HOM05D004330 ORTHO05D005182 0.0e+00 1094.7 682 81.4
SalBow6G1408 Salvia bowleyana HOM05D004330 ORTHO05D005182 0.0e+00 1094.0 740 76.8
Aqoxy2G00735 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 2.4e-311 1071.6 700 77.1
Nitab4.5_0002887g0010 Nicotiana tabacum HOM05D004330 ORTHO05D005182 1.2e-308 1062.8 666 81.7
Carub.0002s1817 Capsella rubella HOM05D004330 ORTHO05D005182 1.5e-308 1062.4 690 78.0
unitig_37.g12692 Utricularia gibba HOM05D004330 ORTHO05D005182 4.2e-306 1054.3 716 75.6
AT1G71300 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 6.9e-301 1036.9 744 71.9
AL2G30900 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 1.1e-287 993.0 614 82.1
COL.COLO4_37491 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.5e-282 976.1 631 80.5
AUR62011839 Chenopodium quinoa HOM05D004330 ORTHO05D005182 3.2e-282 974.9 591 82.9
Mapoly0091s0001 Marchantia polymorpha HOM05D004330 ORTHO05D005182 3.0e-280 968.4 707 68.0
AagrBONN_evm.TU.Sc2ySwM_228.5612 Anthoceros agrestis HOM05D004330 ORTHO05D005182 5.2e-280 967.6 710 68.3
AagrBONN_evm.TU.Sc2ySwM_228.5613 Anthoceros agrestis HOM05D004330 ORTHO05D005182 5.2e-280 967.6 710 68.3
Haze_02242 Corylus avellana HOM05D004330 ORTHO05D005182 4.0e-272 941.4 683 74.2
HPP92_006305 Vanilla planifolia HOM05D004330 ORTHO05D005182 4.4e-271 937.9 584 80.3
Pp3c4_27380 Physcomitrium patens HOM05D004330 ORTHO05D005182 4.8e-270 934.5 707 66.9
SMO304G0018 Selaginella moellendorffii HOM05D004330 ORTHO05D005182 1.1e-269 933.3 691 68.2
vmacro23409 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 7.5e-263 910.6 589 79.1
Zm00001eb393130 Zea mays HOM05D004330 ORTHO05D005182 5.9e-260 901.0 566 78.6
Atru.chr13.2589 Acer truncatum HOM05D004330 ORTHO05D005182 9.5e-258 893.6 518 88.2
Hund19537 Selenicereus undatus HOM05D004330 ORTHO05D005182 6.8e-256 887.5 554 80.7
SHI24508 Sapria himalayana HOM05D004330 ORTHO05D005182 1.4e-248 863.2 675 68.7
MBI16_g23303_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 1.1e-242 843.6 496 86.7
Os10g0488300 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 5.1e-235 818.1 681 60.1
Zm00001eb045280 Zea mays HOM05D004330 ORTHO05D005182 6.2e-225 784.6 675 58.1
COL.COLO4_33595 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.5e-202 710.3 470 80.6
CDE03G0141 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 4.3e-202 708.8 423 83.0
SEGI_21093 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 2.3e-155 553.5 328 81.4
MCO11G104 Micromonas commoda HOM05D004330 ORTHO05D005182 1.8e-152 543.9 750 43.1
Cre08.g367200 Chlamydomonas reinhardtii HOM05D004330 ORTHO05D005182 2.1e-140 503.8 756 37.7
Migut.C00321 Erythranthe guttata HOM05D004330 ORTHO05D005182 8.6e-134 481.9 280 85.7
CSS0031487 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 1.2e-127 461.5 273 83.9
Haze_02247 Corylus avellana HOM05D004330 ORTHO05D005182 3.0e-126 456.8 269 86.6
CBR_g54934 Chara braunii HOM05D004330 ORTHO05D005182 5.4e-120 436.0 359 62.1
PRCOL_00005416 Prasinoderma coloniale HOM05D004330 ORTHO05D005182 5.8e-114 416.0 750 35.2
SGA_v2.0_scaffold227G43197 Striga asiatica HOM05D004330 ORTHO05D005182 3.2e-112 410.2 253 81.4
MBI16_g41537_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 4.6e-111 406.4 233 85.4
COL.COLO4_00397 Corchorus olitorius HOM05D004330 ORTHO05D005182 3.0e-110 403.7 237 85.2
HPP92_006235 Vanilla planifolia HOM05D004330 ORTHO05D005182 4.7e-108 396.4 261 80.5
CDE03G0281 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 5.4e-104 382.9 249 81.1
HPP92_006237 Vanilla planifolia HOM05D004330 ORTHO05D005182 2.1e-79 301.2 182 79.1
FvH4_6g22200 Fragaria vesca HOM05D004330 ORTHO05D005182 3.7e-76 290.4 192 82.8
SalBow1G7663 Salvia bowleyana HOM05D001091 ORTHO05D001020 1.8e-75 288.1 215 68.8
MBI13_g40628_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 1.3e-70 271.9 148 87.2
Rhsim02G0174800 Rhododendron simsii HOM05D004330 ORTHO05D005182 1.1e-69 268.9 195 71.3
FAN14G0768 Fragaria x ananassa HOM05D004330 ORTHO05D005182 7.4e-61 239.6 192 71.9
CBR_g54936 Chara braunii HOM05D000019 ORTHO05D000353 4.1e-59 233.8 155 65.8
Actinidia09912 Actinidia chinensis HOM05D004330 ORTHO05D005182 5.0e-57 226.9 165 72.1
Oeu028617.1 Olea europaea HOM05D004330 ORTHO05D005182 3.6e-55 220.7 156 71.8
QL04p036179 Quercus lobata HOM05D004330 ORTHO05D037441 3.6e-55 220.7 180 70.0
QL09p008022 Quercus lobata HOM05D004330 ORTHO05D005182 2.3e-54 218.0 237 54.9
Cfa027264 Carpinus fangiana HOM05D004330 ORTHO05D005182 7.0e-51 206.5 489 29.0
Hund19535 Selenicereus undatus HOM05D004330 ORTHO05D005182 2.1e-47 194.9 122 84.4
Nitab4.5_0006062g0030 Nicotiana tabacum HOM05D004330 ORTHO05D005182 4.7e-47 193.7 122 82.8
HanXRQChr10g0312231 Helianthus annuus HOM05D004330 ORTHO05D005182 6.3e-44 183.3 104 89.4
Rhsim02G0174700 Rhododendron simsii HOM05D004330 ORTHO05D005182 7.7e-42 176.4 111 83.8
SEGI_19884 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 8.0e-39 166.4 111 74.8
C06p46260 Brassica napus HOM05D004330 ORTHO05D005182 7.5e-29 133.3 100 68.0
C06p46170 Brassica napus HOM05D004330 ORTHO05D005182 1.4e-27 129.0 100 66.0
C06p46210 Brassica napus HOM05D004330 ORTHO05D005182 1.4e-27 129.0 100 66.0
CARHR152420 Cardamine hirsuta HOM05D004330 ORTHO05D005182 1.8e-27 128.6 139 54.0
Haze_14000 Corylus avellana HOM05D004330 ORTHO05D005182 5.4e-27 127.1 73 86.3
MBI13_g40627_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 7.8e-26 123.2 81 77.8
COL.COLO4_23503 Corchorus olitorius HOM05D004330 ORTHO05D005182 2.5e-24 118.2 92 70.7
CARHR064590 Cardamine hirsuta HOM05D004330 ORTHO05D005182 3.3e-24 117.9 127 52.8
Zm00001eb371470 Zea mays HOM05D003702 ORTHO05D004653 1.7e-20 105.5 62 79.0
EL10Ac2g03252 Beta vulgaris HOM05D004330 ORTHO05D005182 1.4e-19 102.4 69 69.6
Zm00001eb378040 Zea mays HOM05D004330 ORTHO05D000629 1.8e-19 102.1 59 81.4
HPP92_006236 Vanilla planifolia HOM05D004330 ORTHO05D005182 3.2e-19 101.3 57 84.2
Zm00001eb294100 Zea mays HOM05D003702 ORTHO05D004653 3.2e-19 101.3 77 66.2
HPP92_006372 Vanilla planifolia HOM05D004330 ORTHO05D005182 2.3e-17 95.1 78 64.1
EL10Ac2g03375 Beta vulgaris HOM05D015602 ORTHO05D006373 8.0e-15 86.7 65 69.2
Haze_02240 Corylus avellana HOM05D000586 ORTHO05D001010 1.1e-14 86.3 61 75.4
COL.COLO4_37492 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.3e-12 79.3 61 70.5
SGA_v2.0_scaffold123G33447 Striga asiatica HOM05D004330 ORTHO05D005182 1.3e-12 79.3 78 55.1
QL05p049490 Quercus lobata HOM05D000205 ORTHO05D037441 2.4e-11 75.1 40 95.0
GSVIVG01018671001 Vitis vinifera HOM05D004330 ORTHO05D005182 4.6e-10 70.9 46 71.7


User provided reference genes

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