Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.02G112000 Glycine max HOM05D004647 ORTHO05D005349 1.2e-132 476.5 241 100.0
Glyma.01G053700 Glycine max HOM05D004647 ORTHO05D005349 2.1e-124 449.1 241 93.4
Phvul.002G091200 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 3.4e-122 441.8 241 91.7
Phvul.003G111100 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 7.5e-122 440.7 241 91.3
arahy.Tifrunner.gnm1.ann1.HI7WIW Arachis hypogaea HOM05D004647 ORTHO05D005349 2.9e-118 428.7 241 86.7
Lj2g0019057 Lotus japonicus HOM05D004647 ORTHO05D005349 5.0e-118 427.9 241 87.1
arahy.Tifrunner.gnm1.ann1.T8C5SJ Arachis hypogaea HOM05D004647 ORTHO05D005349 6.5e-118 427.6 241 86.7
TPR.G19928 Trifolium pratense HOM05D004647 ORTHO05D005349 4.2e-117 424.9 241 85.5
TPR.G14966 Trifolium pratense HOM05D004647 ORTHO05D005349 3.6e-116 421.8 241 85.5
Medtr5g043110 Medicago truncatula HOM05D004647 ORTHO05D005349 1.2e-114 416.8 241 84.6
Psat2g127400 Pisum sativum HOM05D004647 ORTHO05D005349 5.7e-114 414.5 238 86.1
Lalb_Chr10g0098541 Lupinus albus HOM05D004647 ORTHO05D005349 9.8e-114 413.7 241 84.6
Potri.012G080300 Populus trichocarpa HOM05D004647 ORTHO05D005349 2.8e-113 412.1 239 84.5
Sabra12G0057400 Salix brachista HOM05D004647 ORTHO05D005349 2.4e-112 409.1 239 84.1
Ca_06453_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 7.7e-111 404.1 227 87.2
CiPaw.11G026900 Carya illinoinensis HOM05D004647 ORTHO05D005349 1.7e-110 402.9 239 83.3
Gohir.A03G097600 Gossypium hirsutum HOM05D004647 ORTHO05D005349 4.7e-108 394.8 241 80.5
Gorai.005G137000 Gossypium raimondii HOM05D004647 ORTHO05D005349 8.0e-108 394.0 241 80.5
PGR083G2070 Punica granatum HOM05D004647 ORTHO05D005349 1.8e-107 392.9 241 79.3
ClCG06G016990 Citrullus lanatus HOM05D004647 ORTHO05D005349 5.2e-107 391.3 239 81.2
QL10p011820 Quercus lobata HOM05D004647 ORTHO05D005349 1.5e-106 389.8 239 82.4
Gohir.D02G116700 Gossypium hirsutum HOM05D004647 ORTHO05D005349 2.0e-106 389.4 241 79.7
GSVIVG01007738001 Vitis vinifera HOM05D004647 ORTHO05D005349 2.0e-106 389.4 235 82.1
Atru.chr9.2461 Acer truncatum HOM05D004647 ORTHO05D005349 7.5e-106 387.5 239 79.1
Hma1.2p1_0701F.1_g205920 Hydrangea macrophylla HOM05D004647 ORTHO05D005349 7.5e-106 387.5 241 78.4
vmacro16607 Vaccinium macrocarpon HOM05D004647 ORTHO05D005349 1.3e-105 386.7 241 77.6
Actinidia19099 Actinidia chinensis HOM05D004647 ORTHO05D005349 2.9e-105 385.6 241 77.2
Ciclev10021986m.g Citrus clementina HOM05D004647 ORTHO05D005349 2.9e-105 385.6 236 78.0
Prupe.5G174300 Prunus persica HOM05D004647 ORTHO05D005349 2.9e-105 385.6 239 77.0
Lj5A124T65 Lonicera japonica HOM05D004647 ORTHO05D005349 4.9e-105 384.8 236 80.5
Sed0013198 Sechium edule HOM05D004647 ORTHO05D005349 4.9e-105 384.8 239 79.5
Eucgr.B00371 Eucalyptus grandis HOM05D004647 ORTHO05D005349 6.4e-105 384.4 241 79.7
Carub.0004s0503 Capsella rubella HOM05D004647 ORTHO05D005349 8.3e-105 384.0 239 78.7
RcHm_v2.0_Chr7g0193601 Rosa chinensis HOM05D004647 ORTHO05D005349 8.3e-105 384.0 230 80.4
ATR0680G372 Amborella trichopoda HOM05D004647 ORTHO05D005349 1.1e-104 383.6 241 77.2
Rhsim12G0164400 Rhododendron simsii HOM05D004647 ORTHO05D005349 3.2e-104 382.1 241 75.9
Cc04_g13970 Coffea canephora HOM05D004647 ORTHO05D005349 5.4e-104 381.3 241 78.8
TWI15G0781 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 9.2e-104 380.6 239 79.1
FAN04G0366 Fragaria x ananassa HOM05D004647 ORTHO05D005349 1.2e-103 380.2 229 80.3
FAN13G1078 Fragaria x ananassa HOM05D004647 ORTHO05D005349 1.2e-103 380.2 230 80.0
DCAR_016485 Daucus carota HOM05D004647 ORTHO05D005349 3.5e-103 378.6 233 77.7
FAN08G1047 Fragaria x ananassa HOM05D004647 ORTHO05D005349 4.6e-103 378.3 230 79.6
CARHR059710 Cardamine hirsuta HOM05D004647 ORTHO05D005349 1.0e-102 377.1 239 76.2
FAN18G2734 Fragaria x ananassa HOM05D004647 ORTHO05D005349 1.3e-102 376.7 233 78.5
Manes.14G066300 Manihot esculenta HOM05D004647 ORTHO05D005349 1.3e-102 376.7 211 86.7
PSO017G4490 Papaver somniferum HOM05D004647 ORTHO05D005349 1.3e-102 376.7 238 76.9
PSO478G0146 Papaver somniferum HOM05D004647 ORTHO05D005349 1.3e-102 376.7 240 76.2
THA.LOC104807116 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 1.7e-102 376.3 239 77.4
THA.LOC104824976 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 1.7e-102 376.3 239 77.4
Aqoxy3G01032 Aquilegia oxysepala HOM05D004647 ORTHO05D005349 3.0e-102 375.6 234 76.9
QL02p100995 Quercus lobata HOM05D004647 ORTHO05D005349 3.9e-102 375.2 339 60.5
COL.COLO4_30028 Corchorus olitorius HOM05D004647 ORTHO05D005349 5.0e-102 374.8 274 70.8
MBI16_g05634_MAGBIO Magnolia biondii HOM05D004647 ORTHO05D005349 8.6e-102 374.0 249 76.7
HPP92_005895 Vanilla planifolia HOM05D004647 ORTHO05D005349 1.5e-101 373.2 235 74.9
Sc10g0010060 Simmondsia chinensis HOM05D004647 ORTHO05D005349 1.9e-101 372.9 241 76.8
Hund09433 Selenicereus undatus HOM05D004647 ORTHO05D005349 3.3e-101 372.1 241 76.8
CANSAT64G1060 Cannabis sativa HOM05D004647 ORTHO05D005349 4.3e-101 371.7 235 78.3
TWI53G1063 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 9.5e-101 370.5 239 78.2
MSTRG.11448 Avicennia marina HOM05D004647 ORTHO05D005349 1.6e-100 369.8 241 73.9
Nitab4.5_0000003g0580 Nicotiana tabacum HOM05D004647 ORTHO05D005349 6.2e-100 367.9 241 74.3
Oeu035987.1 Olea europaea HOM05D004647 ORTHO05D005349 6.2e-100 367.9 241 75.9
AL7G19680 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 1.4e-99 366.7 239 75.3
Os01g0891400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 2.3e-99 365.9 239 76.6
Thecc.03G011300 Theobroma cacao HOM05D004647 ORTHO05D005349 5.2e-99 364.8 213 84.5
BcaC01g01036 Brassica carinata HOM05D004647 ORTHO05D005349 6.8e-99 364.4 239 75.3
Nitab4.5_0000866g0170 Nicotiana tabacum HOM05D004647 ORTHO05D005349 6.8e-99 364.4 241 73.9
Sp7g29960 Schrenkiella parvula HOM05D004647 ORTHO05D005349 6.8e-99 364.4 239 76.2
Os01g0661400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 1.2e-98 363.6 239 75.7
AT2G25355 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 1.5e-98 363.2 239 74.1
A08p18330 Brassica napus HOM05D004647 ORTHO05D005349 2.0e-98 362.8 239 74.9
BraA08t33790Z Brassica rapa HOM05D004647 ORTHO05D005349 2.0e-98 362.8 239 74.9
Migut.I00016 Erythranthe guttata HOM05D004647 ORTHO05D005349 2.0e-98 362.8 241 73.4
Sopen06g027740 Solanum pennellii HOM05D004647 ORTHO05D005349 2.6e-98 362.5 229 75.5
AL4G16790 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 3.4e-98 362.1 239 73.2
MD06G1174300 Malus domestica HOM05D004647 ORTHO05D005349 4.4e-98 361.7 239 74.5
AUR62030968 Chenopodium quinoa HOM05D004647 ORTHO05D005349 5.8e-98 361.3 241 74.3
BolC3t21057H Brassica oleracea HOM05D004647 ORTHO05D005349 2.2e-97 359.4 239 74.9
SGA_v2.0_scaffold90G27942 Striga asiatica HOM05D004647 ORTHO05D005349 2.2e-97 359.4 260 68.5
AT4G32175 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 4.9e-97 358.2 236 75.0
CSS0008435 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 4.9e-97 358.2 241 73.4
Solyc06g071460.3 Solanum lycopersicum HOM05D004647 ORTHO05D005349 1.1e-96 357.1 232 74.6
PGSC0003DMG400027091 Solanum tuberosum HOM05D004647 ORTHO05D005349 1.4e-96 356.7 229 74.2
FAN18G2015 Fragaria x ananassa HOM05D004647 ORTHO05D005349 2.7e-95 352.4 285 63.9
BcaB03g12733 Brassica carinata HOM05D004647 ORTHO05D005349 3.5e-95 352.1 239 73.6
Lsat_1_v5_gn_4_75321 Lactuca sativa HOM05D004647 ORTHO05D005349 3.5e-95 352.1 242 73.1
EL10Ac5g10752 Beta vulgaris HOM05D004647 ORTHO05D005349 6.0e-95 351.3 228 75.4
CAN.G628.78 Capsicum annuum HOM05D004647 ORTHO05D005349 1.0e-94 350.5 233 72.5
FvH4_5g05270 Fragaria vesca HOM05D004647 ORTHO05D005349 1.3e-94 350.1 212 79.7
Thhalv10026115m.g Eutrema salsugineum HOM05D004647 ORTHO05D005349 1.7e-94 349.7 239 72.4
HanXRQChr16g0504011 Helianthus annuus HOM05D004647 ORTHO05D005349 2.3e-94 349.4 241 72.6
TAR374G0909 Trochodendron aralioides HOM05D004647 ORTHO05D005349 3.0e-94 349.0 206 81.6
Zm00001eb157720 Zea mays HOM05D004647 ORTHO05D005349 8.6e-94 347.4 228 75.0
AUR62008215 Chenopodium quinoa HOM05D004647 ORTHO05D005349 4.3e-93 345.1 266 66.5
CARHR240100 Cardamine hirsuta HOM05D004647 ORTHO05D005349 9.5e-93 344.0 239 69.9
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 1.2e-92 343.6 241 71.8
unitig_52.g17486 Utricularia gibba HOM05D004647 ORTHO05D005349 1.6e-92 343.2 241 70.5
Cpa.g.sc124.56 Carica papaya HOM05D004647 ORTHO05D005349 4.7e-92 341.7 202 81.7
ECA232G2959 Erigeron canadensis HOM05D004647 ORTHO05D005349 3.1e-91 339.0 241 71.0
DCAR_028017 Daucus carota HOM05D004647 ORTHO05D005349 1.5e-90 336.7 196 82.7
CDE11G0116 Ceratophyllum demersum HOM05D004647 ORTHO05D005349 1.4e-88 330.1 213 74.2
SalBow3G4197 Salvia bowleyana HOM05D004647 ORTHO05D005349 3.5e-87 325.5 282 60.3
MD06G1174500 Malus domestica HOM05D004647 ORTHO05D005349 7.8e-87 324.3 241 68.5
Zm00001eb157740 Zea mays HOM05D004647 ORTHO05D005349 2.5e-85 319.3 212 74.1
Haze_07464 Corylus avellana HOM05D004647 ORTHO05D005349 9.5e-85 317.4 240 68.8
Peaxi162Scf00689g00228 Petunia axillaris HOM05D004647 ORTHO05D005349 6.8e-83 311.2 199 75.9
Carub.0007s0838 Capsella rubella HOM05D004647 ORTHO05D005349 5.8e-82 308.1 190 77.9
Aa31LG2G17760 Aethionema arabicum HOM05D004647 ORTHO05D005349 3.7e-81 305.4 239 65.7
CsaV3_1G001530 Cucumis sativus L. HOM05D004647 ORTHO05D005349 1.6e-76 290.0 171 82.5
Pp3c9_4960 Physcomitrium patens HOM05D004647 ORTHO05D005349 2.0e-74 283.1 226 61.9
Dinv02900 Davidia involucrata HOM05D004647 ORTHO05D005349 2.2e-73 279.6 176 75.0
Mapoly0033s0011 Marchantia polymorpha HOM05D004647 ORTHO05D005349 2.9e-73 279.3 240 56.7
SMO358G0755 Selaginella moellendorffii HOM05D004647 ORTHO05D005349 1.7e-70 270.0 222 57.7
THA.LOC104801749 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 2.1e-68 263.1 167 75.4
THA.LOC104815465 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 8.4e-65 251.1 149 80.5
Nn3g16872 Nelumbo nucifera HOM05D004647 ORTHO05D005349 1.9e-61 240.0 145 76.6
VMungo1215G1703 Vigna mungo HOM05D004647 ORTHO05D005349 6.2e-60 235.0 125 89.6
AagrBONN_evm.TU.Sc2ySwM_117.3294 Anthoceros agrestis HOM05D004647 ORTHO05D005349 7.6e-58 228.0 191 59.2
MELO3C026290.2 Cucumis melo HOM05D004647 ORTHO05D005349 4.2e-56 222.2 135 80.7
VMungo1215G3307 Vigna mungo HOM05D004647 ORTHO05D005349 2.1e-55 219.9 121 90.1
Sed0007118 Sechium edule HOM05D004647 ORTHO05D005349 3.5e-55 219.2 182 65.4
SEGI_17588 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 1.0e-54 217.6 141 74.5
SEGI_39775 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 1.0e-54 217.6 141 74.5
Cre07.g319900 Chlamydomonas reinhardtii HOM05D004647 ORTHO05D005349 2.4e-51 206.5 223 47.5
Zm00001eb359590 Zea mays HOM05D004647 ORTHO05D005349 9.0e-51 204.5 131 74.8
QL02p101061 Quercus lobata HOM05D004647 ORTHO05D005349 2.9e-49 199.5 119 84.0
QL02p101105 Quercus lobata HOM05D004647 ORTHO05D005349 8.4e-49 198.0 119 83.2
Medtr5g009430 Medicago truncatula HOM05D004647 ORTHO05D005349 7.1e-48 194.9 120 76.7
PSO384G3338 Papaver somniferum HOM05D004647 ORTHO05D005349 2.1e-47 193.4 170 60.0
CSS0025503 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 3.5e-47 192.6 127 73.2
CBR_g61059 Chara braunii HOM05D004647 ORTHO05D005349 5.3e-43 178.7 234 44.0
Ca_07701_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 6.5e-41 171.8 129 69.0
Glyma.19G045000 Glycine max HOM05D004647 ORTHO05D005349 4.2e-40 169.1 121 72.7
CAN.G110.1 Capsicum annuum HOM05D004647 ORTHO05D005349 5.3e-35 152.1 132 60.6
SEGI_00924 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 1.2e-31 141.0 101 69.3
CSS0039197 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 3.6e-31 139.4 113 66.4
PRCOL_00002933 Prasinoderma coloniale HOM05D004647 ORTHO05D005349 1.4e-30 137.5 178 45.5
Oeu005668.1 Olea europaea HOM05D004647 ORTHO05D005349 1.7e-28 130.6 85 70.6
Cc00_g25260 Coffea canephora HOM05D004647 ORTHO05D005349 6.3e-28 128.6 81 79.0
SEGI_26695 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 1.4e-27 127.5 152 42.8
Ca_24957_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 1.8e-27 127.1 106 63.2
Ca_22423_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 1.5e-26 124.0 100 70.0
Cc00_g18100 Coffea canephora HOM05D004647 ORTHO05D005349 2.0e-26 123.6 86 73.3
Cfa024128 Carpinus fangiana HOM05D004647 ORTHO05D005349 1.3e-25 120.9 233 35.6
PGSC0003DMG400042364 Solanum tuberosum HOM05D004647 ORTHO05D005349 6.1e-23 112.1 91 60.4
Potri.015G075400 Populus trichocarpa HOM05D004647 ORTHO05D005349 2.3e-22 110.2 72 75.0
MCO01G631 Micromonas commoda HOM05D004647 ORTHO05D005349 8.8e-22 108.2 184 34.2
CSS0048825 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 3.5e-18 96.3 70 70.0
Cc00_g33640 Coffea canephora HOM05D004647 ORTHO05D005349 2.9e-17 93.2 51 84.3
SEGI_09107 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 6.1e-15 85.5 62 66.1
MD14G1181100 Malus domestica HOM05D004647 ORTHO05D005349 2.8e-12 76.6 162 35.8
QL02p027014 Quercus lobata HOM05D004647 ORTHO05D005349 2.2e-09 67.0 34 88.2
QL02p024044 Quercus lobata HOM05D004647 ORTHO05D005349 1.2e-07 61.2 33 78.8
SHI17043 Sapria himalayana HOM05D004647 ORTHO05D005349 4.7e-07 59.3 30 90.0
Actinidia19316 Actinidia chinensis HOM05D004647 ORTHO05D005349 8.8e-06 55.1 139 32.4
Medtr5g009450 Medicago truncatula HOM05D004647 ORTHO05D005349 8.8e-06 55.1 37 81.1


User provided reference genes

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