Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
GSVIVG01024566001 Vitis vinifera HOM05D001816 ORTHO05D019076 2.8e-39 164.9 85 100.0
GSVIVG01015738001 Vitis vinifera HOM05D001816 ORTHO05D019076 1.9e-32 142.1 84 88.1
GSVIVG01022996001 Vitis vinifera HOM05D001816 ORTHO05D019076 3.8e-20 101.3 72 75.0
GSVIVG01012030001 Vitis vinifera HOM05D001816 ORTHO05D002001 3.0e-17 91.7 50 90.0
MELO3C000756.2 Cucumis melo HOM05D001816 ORTHO05D019076 5.1e-17 90.9 52 84.6
Ciclev10030624m.g Citrus clementina HOM05D001816 ORTHO05D002001 6.7e-17 90.5 50 88.0
QL03p043876 Quercus lobata HOM05D001816 ORTHO05D002001 8.7e-17 90.1 50 86.0
CsaV3_3G031480 Cucumis sativus L. HOM05D001816 ORTHO05D002001 1.1e-16 89.7 50 88.0
Sabra05G0078100 Salix brachista HOM05D001816 ORTHO05D002001 1.1e-16 89.7 50 86.0
Sed0023453 Sechium edule HOM05D001816 ORTHO05D002001 1.1e-16 89.7 52 84.6
TWI74G1422 Tripterygium wilfordii HOM05D001816 ORTHO05D002001 1.1e-16 89.7 50 86.0
GSVIVG01024320001 Vitis vinifera HOM05D001816 ORTHO05D002001 1.9e-16 89.0 50 86.0
Haze_00547 Corylus avellana HOM05D001816 ORTHO05D002001 2.5e-16 88.6 50 86.0
Eucgr.J00856 Eucalyptus grandis HOM05D001816 ORTHO05D002001 2.5e-16 88.6 50 86.0
ClCG10G011880 Citrullus lanatus HOM05D001816 ORTHO05D002001 4.3e-16 87.8 50 86.0
Manes.04G066500 Manihot esculenta HOM05D001816 ORTHO05D002001 4.3e-16 87.8 50 84.0
Atru.chr9.1432 Acer truncatum HOM05D001816 ORTHO05D002001 5.7e-16 87.4 50 84.0
Cfa015943 Carpinus fangiana HOM05D001816 ORTHO05D002001 5.7e-16 87.4 50 86.0
CiPaw.05G167200 Carya illinoinensis HOM05D001816 ORTHO05D002001 5.7e-16 87.4 50 84.0
Potri.005G094300 Populus trichocarpa HOM05D001816 ORTHO05D002001 5.7e-16 87.4 50 84.0
TAR629G2582 Trochodendron aralioides HOM05D001816 ORTHO05D002001 5.7e-16 87.4 50 84.0
PGR044G0467 Punica granatum HOM05D001816 ORTHO05D002001 7.4e-16 87.0 50 84.0
Sed0006167 Sechium edule HOM05D001816 ORTHO05D002001 9.7e-16 86.7 50 84.0
Nn8g39979 Nelumbo nucifera HOM05D001816 ORTHO05D002001 1.3e-15 86.3 50 82.0
Sed0023914 Sechium edule HOM05D001816 ORTHO05D002001 2.2e-15 85.5 50 82.0
ATR0019G036 Amborella trichopoda HOM05D001816 ORTHO05D002001 2.8e-15 85.1 50 82.0
Nitab4.5_0000021g0810 Nicotiana tabacum HOM05D001816 ORTHO05D002001 3.7e-15 84.7 50 80.0
Nitab4.5_0009278g0020 Nicotiana tabacum HOM05D001816 ORTHO05D002001 3.7e-15 84.7 50 80.0
Peaxi162Scf00133g00523 Petunia axillaris HOM05D001816 ORTHO05D002001 3.7e-15 84.7 50 80.0
arahy.Tifrunner.gnm1.ann1.56UDE7 Arachis hypogaea HOM05D001816 ORTHO05D002001 4.8e-15 84.3 50 80.0
arahy.Tifrunner.gnm1.ann1.8P6R80 Arachis hypogaea HOM05D001816 ORTHO05D002001 4.8e-15 84.3 50 80.0
Glyma.12G027850 Glycine max HOM05D001816 ORTHO05D002001 4.8e-15 84.3 50 82.0
Dinv29120 Davidia involucrata HOM05D001816 ORTHO05D002001 6.3e-15 84.0 50 80.0
Duzib052G1218 Durio zibethinus HOM05D001816 ORTHO05D002001 6.3e-15 84.0 50 82.0
Ca_19037_v3 Cicer arietinum L. HOM05D001816 ORTHO05D002001 8.2e-15 83.6 50 78.0
COL.COLO4_03690 Corchorus olitorius HOM05D001816 ORTHO05D002001 8.2e-15 83.6 50 82.0
Duzib248G0227 Durio zibethinus HOM05D001816 ORTHO05D002001 8.2e-15 83.6 50 82.0
Gohir.D12G138232 Gossypium hirsutum HOM05D001816 ORTHO05D002001 8.2e-15 83.6 50 82.0
Gorai.008G149700 Gossypium raimondii HOM05D001816 ORTHO05D002001 8.2e-15 83.6 50 82.0
Medtr4g074640 Medicago truncatula HOM05D001816 ORTHO05D002001 8.2e-15 83.6 50 78.0
Psat7g173440 Pisum sativum HOM05D001816 ORTHO05D002001 8.2e-15 83.6 50 78.0
HPP92_007958 Vanilla planifolia HOM05D001816 ORTHO05D002001 8.2e-15 83.6 50 80.0
Gohir.A03G164100 Gossypium hirsutum HOM05D001816 ORTHO05D002001 1.1e-14 83.2 50 82.0
Lalb_Chr03g0024831 Lupinus albus HOM05D001816 ORTHO05D002001 1.1e-14 83.2 50 78.0
Manes.11G108600 Manihot esculenta HOM05D001816 ORTHO05D002001 1.1e-14 83.2 50 80.0
Actinidia24519 Actinidia chinensis HOM05D001816 ORTHO05D002001 1.4e-14 82.8 50 78.0
Actinidia27039 Actinidia chinensis HOM05D001816 ORTHO05D002001 1.4e-14 82.8 50 78.0
Glyma.11G102100 Glycine max HOM05D001816 ORTHO05D002001 1.4e-14 82.8 50 78.0
Oeu028987.2 Olea europaea HOM05D001816 ORTHO05D002001 1.4e-14 82.8 50 76.0
Phvul.011G031100 Phaseolus vulgaris HOM05D001816 ORTHO05D002001 1.4e-14 82.8 50 78.0
Solyc03g097290.4 Solanum lycopersicum HOM05D001816 ORTHO05D002001 1.8e-14 82.4 49 79.6
Sopen03g028060 Solanum pennellii HOM05D001816 ORTHO05D002001 1.8e-14 82.4 49 79.6
TPR.G32335 Trifolium pratense HOM05D001816 ORTHO05D002001 1.8e-14 82.4 50 76.0
Oeu027898.1 Olea europaea HOM05D001816 ORTHO05D002001 2.4e-14 82.0 50 76.0
TWI77G0632 Tripterygium wilfordii HOM05D001816 ORTHO05D002001 2.4e-14 82.0 50 78.0
Actinidia08767 Actinidia chinensis HOM05D001816 ORTHO05D002001 3.1e-14 81.6 50 76.0
Cpa.g.sc1758.1 Carica papaya HOM05D001816 ORTHO05D002001 3.1e-14 81.6 50 74.0
Gohir.D02G187500 Gossypium hirsutum HOM05D001816 ORTHO05D002001 3.1e-14 81.6 50 80.0
HanXRQChr11g0337711 Helianthus annuus HOM05D001816 ORTHO05D002001 3.1e-14 81.6 50 78.0
Lsat_1_v5_gn_7_108581 Lactuca sativa HOM05D001816 ORTHO05D002001 3.1e-14 81.6 50 78.0
Rhsim03G0224600 Rhododendron simsii HOM05D001816 ORTHO05D002001 3.1e-14 81.6 50 76.0
DCAR_020432 Daucus carota HOM05D001816 ORTHO05D002001 4.1e-14 81.3 53 71.7
THA.LOC104801893 Tarenaya hassleriana HOM05D001816 ORTHO05D002001 4.1e-14 81.3 50 74.0
THA.LOC104815233 Tarenaya hassleriana HOM05D001816 ORTHO05D002001 4.1e-14 81.3 50 76.0
Aa31LG10G3980 Aethionema arabicum HOM05D001816 ORTHO05D002001 5.3e-14 80.9 54 68.5
CDE05G2317 Ceratophyllum demersum HOM05D001816 ORTHO05D002001 5.3e-14 80.9 50 78.0
Hma1.2p1_0419F.1_g149540 Hydrangea macrophylla HOM05D001816 ORTHO05D002001 5.3e-14 80.9 50 74.0
Lj3g0010854 Lotus japonicus HOM05D001816 ORTHO05D002001 5.3e-14 80.9 50 78.0
SGA_v2.0_scaffold59G20731 Striga asiatica HOM05D001816 ORTHO05D002001 5.3e-14 80.9 50 74.0
Cc11_g00060 Coffea canephora HOM05D001816 ORTHO05D002001 6.9e-14 80.5 50 74.0
Gorai.005G210000 Gossypium raimondii HOM05D001816 ORTHO05D002001 6.9e-14 80.5 50 78.0
Medtr4g074670 Medicago truncatula HOM05D001816 ORTHO05D002001 6.9e-14 80.5 46 80.4
Peaxi162Scf00516g00523 Petunia axillaris HOM05D001816 ORTHO05D002001 6.9e-14 80.5 50 76.0
Cc02_g00090 Coffea canephora HOM05D001816 ORTHO05D002001 9.0e-14 80.1 50 74.0
MBI15_g27187_MAGBIO Magnolia biondii HOM05D001816 ORTHO05D002001 1.2e-13 79.7 50 74.0
Prupe.1G345900 Prunus persica HOM05D001816 ORTHO05D002001 1.2e-13 79.7 50 74.0
VMungo1127G1305 Vigna mungo HOM05D001816 ORTHO05D002001 1.2e-13 79.7 50 74.0
ECA236G4276 Erigeron canadensis HOM05D001816 ORTHO05D002001 1.5e-13 79.3 49 77.6
PSO063G5047 Papaver somniferum HOM05D001816 ORTHO05D002001 1.5e-13 79.3 49 75.5
PSO063G5328 Papaver somniferum HOM05D001816 ORTHO05D002001 1.5e-13 79.3 49 75.5
PSO111G0090 Papaver somniferum HOM05D001816 ORTHO05D002001 1.5e-13 79.3 49 75.5
PSO782G0984 Papaver somniferum HOM05D001816 ORTHO05D002001 1.5e-13 79.3 49 75.5
SEGI_04403 Sequoiadendron giganteum HOM05D001816 ORTHO05D002001 1.5e-13 79.3 50 78.0
CSS0038936 Camellia sinensis var. sinensis HOM05D001816 ORTHO05D002001 2.0e-13 79.0 49 73.5
Lj8C169G8 Lonicera japonica HOM05D001816 ORTHO05D002001 2.0e-13 79.0 49 75.5
RcHm_v2.0_Chr4g0446511 Rosa chinensis HOM05D001816 ORTHO05D002001 2.0e-13 79.0 50 74.0
AT1G50200 Arabidopsis thaliana HOM05D001816 ORTHO05D002001 2.6e-13 78.6 50 72.0
BcaC05g27449 Brassica carinata HOM05D001816 ORTHO05D002001 2.6e-13 78.6 50 72.0
C05p34040 Brassica napus HOM05D001816 ORTHO05D002001 2.6e-13 78.6 50 72.0
BolC5t32139H Brassica oleracea HOM05D001816 ORTHO05D002001 2.6e-13 78.6 50 72.0
Carub.0001s3933 Capsella rubella HOM05D001816 ORTHO05D002001 2.6e-13 78.6 50 72.0
CARHR040290 Cardamine hirsuta HOM05D001816 ORTHO05D002001 2.6e-13 78.6 50 72.0
Thhalv10011205m.g Eutrema salsugineum HOM05D001816 ORTHO05D002001 2.6e-13 78.6 50 72.0
MD13G1007000 Malus domestica HOM05D001816 ORTHO05D002001 2.6e-13 78.6 50 72.0
Pp3c27_7320 Physcomitrium patens HOM05D001816 ORTHO05D002001 2.6e-13 78.6 50 74.0
SalBow2G2560 Salvia bowleyana HOM05D001816 ORTHO05D002001 2.6e-13 78.6 50 74.0
FvH4_4g36780 Fragaria vesca HOM05D001816 ORTHO05D002001 3.4e-13 78.2 49 75.5
FAN07G1183 Fragaria x ananassa HOM05D001816 ORTHO05D002001 3.4e-13 78.2 49 75.5
FAN12G0939 Fragaria x ananassa HOM05D001816 ORTHO05D002001 3.4e-13 78.2 49 75.5
FAN17G1219 Fragaria x ananassa HOM05D001816 ORTHO05D002001 3.4e-13 78.2 49 75.5
SEGI_12349 Sequoiadendron giganteum HOM05D001816 ORTHO05D002001 3.4e-13 78.2 50 76.0
MSTRG.3 Avicennia marina HOM05D001816 ORTHO05D002001 4.5e-13 77.8 50 74.0
Migut.F00930 Erythranthe guttata HOM05D001816 ORTHO05D002001 4.5e-13 77.8 50 72.0
AL1G57820 Arabidopsis lyrata HOM05D001816 ORTHO05D002001 5.9e-13 77.4 50 70.0
MD16G1000800 Malus domestica HOM05D001816 ORTHO05D002001 5.9e-13 77.4 50 70.0
Ah.08g210750 Amaranthus hybridus HOM05D001816 ORTHO05D002001 7.7e-13 77.0 50 74.0
AagrBONN_evm.TU.Sc2ySwM_228.5790 Anthoceros agrestis HOM05D001816 ORTHO05D002001 7.7e-13 77.0 50 74.0
BcaB07g33474 Brassica carinata HOM05D001816 ORTHO05D002001 7.7e-13 77.0 50 70.0
BcaC08g43202 Brassica carinata HOM05D001816 ORTHO05D002001 7.7e-13 77.0 50 70.0
A06p03300 Brassica napus HOM05D001816 ORTHO05D002001 7.7e-13 77.0 50 70.0
A08p03280 Brassica napus HOM05D001816 ORTHO05D002001 7.7e-13 77.0 50 70.0
C06p05260 Brassica napus HOM05D001816 ORTHO05D002001 7.7e-13 77.0 50 70.0
BolC6t35631H Brassica oleracea HOM05D001816 ORTHO05D002001 7.7e-13 77.0 50 70.0
BolC6t35636H Brassica oleracea HOM05D001816 ORTHO05D002001 7.7e-13 77.0 50 70.0
BraA06t23540Z Brassica rapa HOM05D001816 ORTHO05D002001 7.7e-13 77.0 50 70.0
BraA08t32361Z Brassica rapa HOM05D001816 ORTHO05D002001 7.7e-13 77.0 50 70.0
BcaB04g17263 Brassica carinata HOM05D001816 ORTHO05D002001 1.0e-12 76.6 50 70.0
BraA05t20939Z Brassica rapa HOM05D001816 ORTHO05D002001 1.0e-12 76.6 50 70.0
unitig_52.g17019 Utricularia gibba HOM05D001816 ORTHO05D002001 1.0e-12 76.6 50 70.0
A05p20290 Brassica napus HOM05D001816 ORTHO05D002001 1.3e-12 76.3 50 70.0
AUR62028574 Chenopodium quinoa HOM05D001816 ORTHO05D002001 1.3e-12 76.3 50 74.0
Sp3g25110 Schrenkiella parvula HOM05D001816 ORTHO05D002001 1.3e-12 76.3 50 68.0
Thecc.02G161500 Theobroma cacao HOM05D001816 ORTHO05D002001 1.3e-12 76.3 50 76.0
C06p05090 Brassica napus HOM05D001816 ORTHO05D002001 1.7e-12 75.9 57 63.2
AUR62033529 Chenopodium quinoa HOM05D001816 ORTHO05D002001 1.7e-12 75.9 50 72.0
unitig_62.g23836 Utricularia gibba HOM05D001816 ORTHO05D002001 1.7e-12 75.9 50 70.0
AUR62017503 Chenopodium quinoa HOM05D001816 ORTHO05D002001 3.8e-12 74.7 50 70.0
Lalb_Chr01g0001481 Lupinus albus HOM05D001816 ORTHO05D002001 3.8e-12 74.7 49 71.4
Sp1g37060 Schrenkiella parvula HOM05D001816 ORTHO05D002001 3.8e-12 74.7 50 68.0
BcaC01g01218 Brassica carinata HOM05D001816 ORTHO05D002001 5.0e-12 74.3 50 68.0
C03p89530 Brassica napus HOM05D001816 ORTHO05D002001 5.0e-12 74.3 50 68.0
BolC3t21267H Brassica oleracea HOM05D001816 ORTHO05D002001 5.0e-12 74.3 50 68.0
Ah.15g091020 Amaranthus hybridus HOM05D001816 ORTHO05D002001 6.5e-12 73.9 50 72.0
AagrBONN_evm.TU.Sc2ySwM_344.917 Anthoceros agrestis HOM05D001816 ORTHO05D002001 6.5e-12 73.9 50 70.0
Sc06g0002420 Simmondsia chinensis HOM05D001816 ORTHO05D002001 8.5e-12 73.6 50 70.0
Os10g0182000 Oryza sativa ssp. japonica HOM05D001816 ORTHO05D002001 1.4e-11 72.8 49 67.3
Zm00001eb409500 Zea mays HOM05D001816 ORTHO05D002001 1.9e-11 72.4 49 67.3
EL10Ac7g16954 Beta vulgaris HOM05D001816 ORTHO05D002001 3.2e-11 71.6 50 70.0
CAN.G732.34 Capsicum annuum HOM05D001816 ORTHO05D002001 7.2e-11 70.5 72 54.2
Hma1.2p1_0003F.1_g003750 Hydrangea macrophylla HOM05D001816 ORTHO05D019076 7.2e-11 70.5 50 68.0
Aqoxy7G03361 Aquilegia oxysepala HOM05D001816 ORTHO05D002001 1.2e-10 69.7 50 64.0
CBR_g34895 Chara braunii HOM05D001816 ORTHO05D002001 1.6e-10 69.3 44 75.0
CBR_g6566 Chara braunii HOM05D003643 ORTHO05D005001 1.6e-10 69.3 44 75.0
Hma1.2p1_0061F.1_g034040 Hydrangea macrophylla HOM05D001816 ORTHO05D002001 2.7e-10 68.6 84 50.0
Hma1.2p1_0080F.1_g042160 Hydrangea macrophylla HOM05D001816 ORTHO05D019076 2.7e-10 68.6 50 68.0
Hund19354 Selenicereus undatus HOM05D001816 ORTHO05D002001 2.7e-10 68.6 50 72.0
PRCOL_00001517 Prasinoderma coloniale HOM05D001816 ORTHO05D002001 2.3e-09 65.5 43 69.8
AUR62015043 Chenopodium quinoa HOM05D001816 ORTHO05D002001 3.9e-09 64.7 50 66.0
Cre02.g143200 Chlamydomonas reinhardtii HOM05D001816 ORTHO05D002001 5.7e-08 60.8 48 62.5
MCO03G183 Micromonas commoda HOM05D001816 ORTHO05D002001 3.7e-07 58.2 43 60.5
Gohir.A12G134600 Gossypium hirsutum HOM05D001816 ORTHO05D002001 8.2e-07 57.0 39 71.8
Lj3g0027168 Lotus japonicus HOM05D001816 ORTHO05D002001 2.4e-06 55.5 50 62.0
ECA246G0614 Erigeron canadensis HOM05D001816 ORTHO05D002001 5.3e-06 54.3 39 64.1
Psat5g191680 Pisum sativum HOM05D003495 ORTHO05D004159 6.9e-06 53.9 30 76.7


User provided reference genes

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